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Partial convergence of the human vaginal and rectal maternal microbiota in late gestation and early post-partum

Shin, Hakdong; Martinez, Keith A; Henderson, Nora; Jay, Melanie; Schweizer, William; Bogaert, Debby; Park, Gwoncheol; Bokulich, Nicholas A; Blaser, Martin J; Dominguez-Bello, Maria Gloria
The human vaginal and fecal microbiota change during pregnancy. Because of the proximity of these perineal sites and the evolutionarily conserved maternal-to-neonatal transmission of the microbiota, we hypothesized that the microbiota of these two sites (rectal and vaginal) converge during the last gestational trimester as part of the preparation for parturition. To test this hypothesis, we analyzed 16S rRNA sequences from vaginal introitus and rectal samples in 41 women at gestational ages 6 and 8 months, and at 2 months post-partum. The results show that the human vaginal and rectal bacterial microbiota converged during the last gestational trimester and into the 2nd month after birth, with a significant decrease in Lactobacillus species in both sites, as alpha diversity progressively increased in the vagina and decreased in the rectum. The microbiota convergence of the maternal vaginal-anal sites perinatally might hold significance for the inter-generational transmission of the maternal microbiota.
PMCID:10264455
PMID: 37311781
ISSN: 2055-5008
CID: 5541392

Naturalization of the microbiota developmental trajectory of Cesarean-born neonates after vaginal seeding

Song, Se Jin; Wang, Jincheng; Martino, Cameron; Jiang, Lingjing; Thompson, Wesley K; Shenhav, Liat; McDonald, Daniel; Marotz, Clarisse; Harris, Paul R; Hernandez, Caroll D; Henderson, Nora; Ackley, Elizabeth; Nardella, Deanna; Gillihan, Charles; Montacuti, Valentina; Schweizer, William; Jay, Melanie; Combellick, Joan; Sun, Haipeng; Garcia-Mantrana, Izaskun; Gil Raga, Fernando; Collado, Maria Carmen; Rivera-Viñas, Juana I; Campos-Rivera, Maribel; Ruiz-Calderon, Jean F; Knight, Rob; Dominguez-Bello, Maria Gloria
BACKGROUND:Early microbiota perturbations are associated with disorders that involve immunological underpinnings. Cesarean section (CS)-born babies show altered microbiota development in relation to babies born vaginally. Here we present the first statistically powered longitudinal study to determine the effect of restoring exposure to maternal vaginal fluids after CS birth. METHODS:Using 16S rRNA gene sequencing, we followed the microbial trajectories of multiple body sites in 177 babies over the first year of life; 98 were born vaginally, and 79 were born by CS, of whom 30 were swabbed with a maternal vaginal gauze right after birth. FINDINGS:Compositional tensor factorization analysis confirmed that microbiota trajectories of exposed CS-born babies aligned more closely with that of vaginally born babies. Interestingly, the majority of amplicon sequence variants from maternal vaginal microbiomes on the day of birth were shared with other maternal sites, in contrast to non-pregnant women from the Human Microbiome Project (HMP) study. CONCLUSIONS:The results of this observational study prompt urgent randomized clinical trials to test whether microbial restoration reduces the increased disease risk associated with CS birth and the underlying mechanisms. It also provides evidence of the pluripotential nature of maternal vaginal fluids to provide pioneer bacterial colonizers for the newborn body sites. This is the first study showing long-term naturalization of the microbiota of CS-born infants by restoring microbial exposure at birth. FUNDING:C&D, Emch Fund, CIFAR, Chilean CONICYT and SOCHIPE, Norwegian Institute of Public Health, Emerald Foundation, NIH, National Institute of Justice, Janssen.
PMCID:9123283
PMID: 35590169
ISSN: 2666-6340
CID: 5232562

A Modern Measles Outbreak: Understanding maternal immunity and impact on postpartum vaccination uptake

Hirschberg, Carly I; Limaye, Meghana; Roman, Ashley; Friedman, Steven; Lighter, Jennifer L; Deeb, Jessica; Schweizer, William; Wei, Lili; Mehta-Lee, Shilpi S
OBJECTIVE:In October 2018, a measles (rubeola) outbreak was identified in New York City (NYC) & Rockland County (RC) and a public health campaign and hospital policy changes were made to increase awareness of the importance of vaccination and increase vaccination rates. We describe the prevalence of rubeola immunity in pregnant women and the change in uptake of postpartum MMR vaccination before and during the measles outbreak. METHODS:A multi-pronged intervention was developed by the health system with the intent of raising awareness of the outbreak, identifying patients at risk of contracting measles during pregnancy, and limiting exposure of inpatients to the disease. This was a quality improvement study to assess the impact of the intervention and public health policy on the rates of documentation of rubeola immunity and rubeola vaccination rates in non-immune women. Women who delivered at NYU Langone Health prior to the outbreak (7/1/2016 to 7/1/2017) were compared to women who delivered during the outbreak (7/1/18 to 7/1/19). The primary outcome was acceptance of MMR vaccination in non-immune women during the postpartum period. Analysis was conducted using logistic regression and chi-square tests, and alpha was set at 0.05. RESULTS:19585 patients were analyzed. 9,162 women delivered prior to outbreak and 10,423 delivered during the outbreak. Of these, 2589 (13.2%) were documented as living in a high-risk ZIP code, which were areas at the epicenter of the measles outbreak. 14,731 women (75.2%) were tested for rubeola immunity and 3270 (22.2%) of those tested were not immune. In the year of the outbreak, a higher proportion of women had rubeola immunity documented with serum titers than in the year prior to the outbreak (81% vs. 69%, p<0.001). Inpatient compliance with postpartum MMR administration was greater during the outbreak than prior to it (76% vs 59%, p <.001) for patients from both low risk and high-risk ZIP codes. CONCLUSION/CONCLUSIONS:The NYC & RC measles outbreak, together with implementation of a health system wide education program and a change in public health policy led to an increase in the proportion of pregnant women being screened for rubeola immunity. It also led to an increase in uptake of the immediate postpartum MMR vaccine.
PMID: 33453442
ISSN: 2589-9333
CID: 4760102

Outcomes of Maternal-Newborn Dyads After Maternal SARS-CoV-2

Verma, Sourabh; Bradshaw, Chanda; Auyeung, N S Freda; Lumba, Rishi; Farkas, Jonathan S; Sweeney, Nicole B; Wachtel, Elena V; Bailey, Sean M; Noor, Asif; Kunjumon, Bgee; Cicalese, Erin; Hate, Rahul; Lighter, Jennifer L; Alessi, Samantha; Schweizer, William E; Hanna, Nazeeh; Roman, Ashley S; Dreyer, Benard; Mally, Pradeep V
PMID: 32737153
ISSN: 1098-4275
CID: 4553402

A Survey of Labor and Delivery Practices in New York City during the COVID-19 Pandemic

Peña, Juan A; Bianco, Angela T; Simpson, Lynn L; Bernstein, Peter S; Roman, Ashley S; Goffman, Dena; Schweizer, William E; Overbey, Jessica; Stone, Joanne L
Recently, a novel coronavirus, precisely severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2), that causes the disease novel coronavirus disease 2019 (COVID-19) has been declared a worldwide pandemic. Over a million cases have been confirmed in the United States. As of May 5, 2020, New York State has had over 300,000 cases and 24,000 deaths with more than half of the cases and deaths occurring in New York City (NYC). Little is known, however, of how this virus impacts pregnancy. Given this lack of data and the risk for severe disease in this relatively immunocompromised population, further understanding of the obstetrical management of COVID-19, as well as hospital level preparation for its control, is crucial. Guidance has come from expert opinion, professional societies and public health agencies, but to date, there is no report on how obstetrical practices have adapted these recommendations to their local situations. We therefore developed an internet-based survey to elucidate the practices put into place to guide the care of obstetrical patients during the COVID-19 pandemic. We surveyed obstetrical leaders in four academic medical centers in NYC who were implementing and testing protocols at the height of the pandemic. We found that all sites made changes to their practices, and that there appeared to be agreement with screening and testing for COVID-19, as well as labor and delivery protocols, for SARS-CoV-2-positive patients. We found less consensus with respect to inpatient antepartum fetal surveillance. We hope that this experience is useful to other centers as they formulate their plans to face this pandemic. KEY POINTS: · Practices changed to accommodate public health needs.. · Most practices are screened for novel coronavirus disease 2019 (COVID-19) on admission.. · Fetal testing in COVID-19 patients varied..
PMID: 32516817
ISSN: 1098-8785
CID: 4489582

Characteristics and Outcomes of 241 Births to Women With Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection at Five New York City Medical Centers

Khoury, Rasha; Bernstein, Peter S; Debolt, Chelsea; Stone, Joanne; Sutton, Desmond M; Simpson, Lynn L; Limaye, Meghana A; Roman, Ashley S; Fazzari, Melissa; Penfield, Christina A; Ferrara, Lauren; Lambert, Calvin; Nathan, Lisa; Wright, Rodney; Bianco, Angela; Wagner, Brian; Goffman, Dena; Gyamfi-Bannerman, Cynthia; Schweizer, William E; Avila, Karina; Khaksari, Bijan; Proehl, Meghan; Heitor, Fabiano; Monro, Johanna; Keefe, David L; DʼAlton, Mary E; Brodman, Michael; Makhija, Sharmila K; Dolan, Siobhan M
OBJECTIVE:To describe the characteristics and birth outcomes of women with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection as community spread in New York City was detected in March 2020. METHODS:We performed a prospective cohort study of pregnant women with laboratory-confirmed SARS-CoV-2 infection who gave birth from March 13 to April 12, 2020, identified at five New York City medical centers. Demographic and clinical data from delivery hospitalization records were collected, and follow-up was completed on April 20, 2020. RESULTS:Among this cohort (241 women), using evolving criteria for testing, 61.4% of women were asymptomatic for coronavirus disease 2019 (COVID-19) at the time of admission. Throughout the delivery hospitalization, 26.5% of women met World Health Organization criteria for mild COVID-19, 26.1% for severe, and 5% for critical. Cesarean birth was the mode of delivery for 52.4% of women with severe and 91.7% with critical COVID-19. The singleton preterm birth rate was 14.6%. Admission to the intensive care unit was reported for 17 women (7.1%), and nine (3.7%) were intubated during their delivery hospitalization. There were no maternal deaths. Body mass index (BMI) 30 or higher was associated with COVID-19 severity (P=.001). Nearly all newborns tested negative for SARS-CoV-2 infection immediately after birth (97.5%). CONCLUSION/CONCLUSIONS:During the first month of the SARS-CoV-2 outbreak in New York City and with evolving testing criteria, most women with laboratory-confirmed infection admitted for delivery did not have symptoms of COVID-19. Almost one third of women who were asymptomatic on admission became symptomatic during their delivery hospitalization. Obesity was associated with COVID-19 severity. Disease severity was associated with higher rates of cesarean and preterm birth.
PMID: 32555034
ISSN: 1873-233x
CID: 4485172

Improving Birth Dose Hepatitis B Vaccination Rates: A Quality Improvement Intervention

Bradshaw, Chanda; DiFrisco, Eileen; Schweizer, William; Pavsic, Joy; Demarco, Kathleen; Weckesser, Jane; Gold-VonSimson, Gabrielle; Rosenberg, Rebecca E
BACKGROUND:There are 43 000 new cases of hepatitis B virus infection and 1000 cases of perinatally acquired infection each year in the United States. National recommendations are to administer hepatitis B (HepB) vaccine to all stable newborns >2000 g within 24 hours of birth. Our primary objective was to increase institutional vaccination rates from a baseline of 52% to goal >85% before hospital discharge. METHODS:In February 2017, we instituted a multidisciplinary quality improvement project aimed at increasing HepB vaccination birth dose rates. Interventions included (1) standardizing the process of offering HepB vaccine via scripting and timing, (2) engaging and educating parents, and (3) educating physicians and nurses regarding the importance of HepB vaccination and strategies to discuss HepB vaccination with vaccine-hesitant parents. The main outcome measure was the percentage of newborns receiving HepB vaccination by discharge. The secondary outcome was the percentage of newborns receiving HepB vaccination by 12 hours of life per New York State Department of Health recommendation. Data were analyzed by using statistical process control P-charts. RESULTS:A total of 21 108 newborns were included between July 2015 and April 2019. In addition to several upward centerline shifts, implementation of interventions resulted in increased and sustained HepB vaccination rates by hospital discharge from a baseline of 52.4% to 72.5%. Rates by 12 hours of life increased from 21.5% to 42.5%. CONCLUSIONS:Multidisciplinary collaboration, scripting, and provider and staff education regarding the risks of hepatitis B virus, benefits of HepB vaccine, and strategies to discuss HepB vaccination with parents significantly increased vaccination rates. Further efforts to improve vaccination rates to within 12 hours are preferable.
PMID: 32341000
ISSN: 2154-1671
CID: 4436852

1060: A modern measles outbreak: Understanding maternal immunity and impact on postpartum vaccination uptake [Meeting Abstract]

Mehta-Lee, S; Limaye, M; Hirschberg, C; Wei, L; Deeb, J; Schweizer, W; Roman, A
Objective: In October 2018 a measles (rubeola) outbreak was identified in New York City (NYC) & Rockland County (RC). A public health emergency was declared with a focus on increasing MMR (measles, mumps, and rubella) vaccination uptake. Childhood MMR vaccination is 97% effective but antibody titers decrease over time. Screening for immunity has not been a routine part of prenatal care. NYU Langone Health created a communication and prevention program at the start of the outbreak and non-immune women were encouraged to take the MMR vaccination postpartum during hospitalization. We aimed to describe the prevalence of rubeola immunity in pregnant women and the change in uptake of postpartum MMR vaccination before and during the measles outbreak.
Study Design: This was a retrospective cohort, quality improvement study. The control group was women who delivered at NYU Langone Health prior to the outbreak (PO) from 7/1/2016 to 7/1/2017. The study group was women who delivered during the outbreak (DO) from 7/1/18 to 7/1/19. Primary outcome was acceptance of MMR vaccination in non-immune women during the postpartum period. Serologic evidence of rubeola immunity was defined based on lab reference values. Statistical analysis was done using chi-square and T-test.
Result(s): 19585 patients were analyzed. 9,162 women delivered PO and 10,423 delivered DO. Of these, 2589 (13.2%) were documented as living in a high-risk ZIP code. 14,731 women (75.2%) were tested for rubeola immunity and 3270 (22.2%) of those tested were not immune. In the year DO, a higher proportion of women had rubeola immunity documented with serum titers than in the year PO (81% vs. 69%, p< 0.001). Inpatient compliance with postpartum MMR administration was greater DO than PO (100% v. 88.2%, p< 0.001).
Conclusion(s): The NYC & RC measles outbreak, together with implementation of a health system wide education program and a change in public health policy led to an increase in the proportion of pregnant women being screened for measles immunity. It also led to an increase in uptake of the immediate postpartum MMR vaccine. [Formula presented]
Copyright
EMBASE:2004455396
ISSN: 1097-6868
CID: 4260892

Where Does the Time Go? Understanding What Delays Emergent Gynecologic Surgical Management from the ED to the or [Meeting Abstract]

Gray, D; Mehta-Lee, S S; Echevarria, G; Schweizer, W E
INTRODUCTION: Women who present to the emergency department (ED) for gynecologic issues at our institution undergo multiple evaluative steps. We sought to understand how these steps delay indicated operative management. Time spent at each stage of an ED visit for an acute surgical presentation was investigated as part of a quality improvement project for NYU Langone Health.
METHOD(S): This retrospective, observational study quantifies time spent by patients at each evaluative stage from presentation to operating room incision time. We included females 18 years or older, presenting to the NYU Tisch Hospital ED with acute gynecologic complaints requiring surgery. Gynecology consult records from 9/1/16 to 8/29/17 were reviewed and surgical cases were identified. We defined five relevant time points for each patient: 1--initial presentation, 2--ED provider evaluation, 3--Gynecology consult, 4--time of imaging, and 5--surgical start time. We recorded time in hours, between the above evaluations.
RESULT(S): Of 1194 consults reviewed, 79 patients required urgent surgery for benign etiologies (eg, adnexal torsion, ruptured ectopic pregnancy or heavy vaginal bleeding). The median time spent from presentation to incision was 6.1 (IQR: 4.12-8.53) hours. The median time from presentation to finalization of imaging and from gynecology evaluation to incision were 0.78 (IQR: 0.35-14) and 3.3 (IQR: 1.6-54) hours, respectively.
CONCLUSION(S): This information implies that throughout an evaluation for urgent gynecologic surgery, more than 50% of the time is spent after the decision has been made to operate. Further study of this time frame may ultimately improve bed utilization and reduce delays
EMBASE:633843734
ISSN: 1873-233x
CID: 4762142

Antibiotics, birth mode, and diet shape microbiome maturation during early life

Bokulich, Nicholas A; Chung, Jennifer; Battaglia, Thomas; Henderson, Nora; Jay, Melanie; Li, Huilin; D Lieber, Arnon; Wu, Fen; Perez-Perez, Guillermo I; Chen, Yu; Schweizer, William; Zheng, Xuhui; Contreras, Monica; Dominguez-Bello, Maria Gloria; Blaser, Martin J
Early childhood is a critical stage for the foundation and development of both the microbiome and host. Early-life antibiotic exposures, cesarean section, and formula feeding could disrupt microbiome establishment and adversely affect health later in life. We profiled microbial development during the first 2 years of life in a cohort of 43 U.S. infants and identified multiple disturbances associated with antibiotic exposures, cesarean section, and formula feeding. These exposures contributed to altered establishment of maternal bacteria, delayed microbiome development, and altered alpha-diversity. These findings illustrate the complexity of early-life microbiome development and its sensitivity to perturbation.
PMCID:5308924
PMID: 27306664
ISSN: 1946-6242
CID: 2143372