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The power of many brains: Catalyzing neuropsychiatric discovery through open neuroimaging data and large-scale collaboration

Lu, Bin; Chen, Xiao; Xavier Castellanos, Francisco; Thompson, Paul M; Zuo, Xi-Nian; Zang, Yu-Feng; Yan, Chao-Gan
Recent advances in open neuroimaging data are enhancing our comprehension of neuropsychiatric disorders. By pooling images from various cohorts, statistical power has increased, enabling the detection of subtle abnormalities and robust associations, and fostering new research methods. Global collaborations in imaging have furthered our knowledge of the neurobiological foundations of brain disorders and aided in imaging-based prediction for more targeted treatment. Large-scale magnetic resonance imaging initiatives are driving innovation in analytics and supporting generalizable psychiatric studies. We also emphasize the significant role of big data in understanding neural mechanisms and in the early identification and precise treatment of neuropsychiatric disorders. However, challenges such as data harmonization across different sites, privacy protection, and effective data sharing must be addressed. With proper governance and open science practices, we conclude with a projection of how large-scale imaging resources and collaborations could revolutionize diagnosis, treatment selection, and outcome prediction, contributing to optimal brain health.
PMID: 38519398
ISSN: 2095-9281
CID: 5640992

Chronic Mild Sleep Restriction Does Not Lead to Marked Neuronal Alterations Compared to Maintained Adequate Sleep in Adults

Li, Xue-Ying; Yoncheva, Yuliya; Yan, Chao-Gan; Castellanos, Francisco Xavier; St-Onge, Marie-Pierre
BACKGROUND:Sleep restriction (SR) has been shown to upregulate neuronal reward networks in response to food stimuli but prior studies were short-term and employed severe SR paradigms. OBJECTIVE:Our goal was to determine whether mild SR, achieved by delaying bedtimes by 1.5h, influences neuronal networks responsive to food stimuli compared to maintained adequate sleep (AS) >7h/night. METHODS:A randomized controlled crossover study with two 6-wk phases, AS (≥7h sleep/night) and SR (-1.5h/night relative to screening), was conducted. Adults with adequate sleep duration, measured using wrist-actigraphy over a 2-wk screening period, and self-reported good sleep quality were enrolled. Resting-state and food-stimulated functional neuroimaging (fMRI) was performed at endpoint of each phase. Resting-state fMRI data analyses included a priori region-of-interest seed-based functional connectivity, whole-brain voxel-wise analyses, and network analyses. Food-task fMRI analyses compared brain activity patterns in response to food cues between conditions. Paired-sample t-tests tested differences between conditions. RESULTS:Twenty-six participants (16 males; age 29.6±5.3y, body mass index 26.9±4.0kg/m2) contributed complete data. Total sleep time was 7h30±28min/night during AS vs. 6h12±26min/night during SR. We employed different statistical approaches to replicate prior studies in the field and to apply more robust approaches that are currently advocated in the field. Using uncorrected P<0.01, cluster ≥10 voxels thresholds, we replicate prior findings of increased activation in response to foods in reward networks after SR vs. AS (right insula, right inferior frontal gyrus, and right supramarginal gyrus). These findings did not survive more rigorous analytical approaches (Gaussian Random Field theory correction at two-tailed voxel P<0.001, cluster P<0.05). CONCLUSIONS:Results suggest that mild SR leads to increased reward responsivity to foods but with low confidence given failure to meet significance from rigorous statistical analyses. Further research is necessary to inform the mechanisms underlying the role of sleep on food intake regulation. CLINICAL TRIAL REGISTRATION/BACKGROUND:NCT02960776; https://clinicaltrials.gov/ct2/show/NCT02960776.
PMID: 38104943
ISSN: 1541-6100
CID: 5612572

A longitudinal resource for population neuroscience of school-age children and adolescents in China

Fan, Xue-Ru; Wang, Yin-Shan; Chang, Da; Yang, Ning; Rong, Meng-Jie; Zhang, Zhe; He, Ye; Hou, Xiaohui; Zhou, Quan; Gong, Zhu-Qing; Cao, Li-Zhi; Dong, Hao-Ming; Nie, Jing-Jing; Chen, Li-Zhen; Zhang, Qing; Zhang, Jia-Xin; Zhang, Lei; Li, Hui-Jie; Bao, Min; Chen, Antao; Chen, Jing; Chen, Xu; Ding, Jinfeng; Dong, Xue; Du, Yi; Feng, Chen; Feng, Tingyong; Fu, Xiaolan; Ge, Li-Kun; Hong, Bao; Hu, Xiaomeng; Huang, Wenjun; Jiang, Chao; Li, Li; Li, Qi; Li, Su; Liu, Xun; Mo, Fan; Qiu, Jiang; Su, Xue-Quan; Wei, Gao-Xia; Wu, Yiyang; Xia, Haishuo; Yan, Chao-Gan; Yan, Zhi-Xiong; Yang, Xiaohong; Zhang, Wenfang; Zhao, Ke; Zhu, Liqi; ,; ,; Zuo, Xi-Nian
During the past decade, cognitive neuroscience has been calling for population diversity to address the challenge of validity and generalizability, ushering in a new era of population neuroscience. The developing Chinese Color Nest Project (devCCNP, 2013-2022), the first ten-year stage of the lifespan CCNP (2013-2032), is a two-stages project focusing on brain-mind development. The project aims to create and share a large-scale, longitudinal and multimodal dataset of typically developing children and adolescents (ages 6.0-17.9 at enrolment) in the Chinese population. The devCCNP houses not only phenotypes measured by demographic, biophysical, psychological and behavioural, cognitive, affective, and ocular-tracking assessments but also neurotypes measured with magnetic resonance imaging (MRI) of brain morphometry, resting-state function, naturalistic viewing function and diffusion structure. This Data Descriptor introduces the first data release of devCCNP including a total of 864 visits from 479 participants. Herein, we provided details of the experimental design, sampling strategies, and technical validation of the devCCNP resource. We demonstrate and discuss the potential of a multicohort longitudinal design to depict normative brain growth curves from the perspective of developmental population neuroscience. The devCCNP resource is shared as part of the "Chinese Data-sharing Warehouse for In-vivo Imaging Brain" in the Chinese Color Nest Project (CCNP) - Lifespan Brain-Mind Development Data Community ( https://ccnp.scidb.cn ) at the Science Data Bank.
PMCID:10442366
PMID: 37604823
ISSN: 2052-4463
CID: 5596022

Common and unique alterations of functional connectivity in major depressive disorder and bipolar disorder

Yu, Ai-Hong; Gao, Qing-Lin; Deng, Zhao-Yu; Dang, Yi; Yan, Chao-Gan; Chen, Zhen-Zhu; Li, Feng; Zhao, Shu-Ying; Liu, Yue; Bo, Qi-Jing
OBJECTIVE:Major depressive disorder (MDD) and bipolar disorder (BD) are considered whole-brain disorders with some common clinical and neurobiological features. It is important to investigate neural mechanisms to distinguish between the two disorders. However, few studies have explored the functional dysconnectivity between the two disorders from the whole brain level. METHODS:In this study, 117 patients with MDD, 65 patients with BD, and 116 healthy controls completed resting-state functional magnetic resonance imaging (R-fMRI) scans. Both edge-based network construction and large-scale network analyses were applied. RESULTS:Results found that both the BD and MDD groups showed decreased FC in the whole brain network. The shared aberrant network across patients involves the visual network (VN), sensorimotor network (SMN), dorsal attention network (DAN), and ventral attention network (VAN), which is related to the processing of external stimuli. The default mode network (DMN) and the limbic network (LN) abnormalities were only found in patients with MDD. Furthermore, results showed the highest decrease in edges of patients with MDD in between-network FC in SMN-VN, whereas in VAN-VN of patients with BD. CONCLUSIONS:Our findings indicated that both MDD and BD are extensive abnormal brain network diseases, mainly aberrant in those brain networks correlated to the processing of external stimuli, especially the attention network. Specific altered functional connectivity also was found in MDD and BD groups, respectively. These results may provide possible trait markers to distinguish the two disorders.
PMID: 37161552
ISSN: 1399-5618
CID: 5509332

Surface-based functional metrics and auditory cortex characteristics in chronic tinnitus

Ma, Xiaoyan; Chen, Ningxuan; Wang, Fangyuan; Zhang, Chi; Dai, Jing; Ding, Haina; Yan, Chaogan; Shen, Weidong; Yang, Shiming
Abnormal auditory cortex (AC) neuronal activity is thought to be a primary cause of the auditory disturbances perceived by individuals suffering from tinnitus. The present study was designed to test that possibility by evaluating auditory cortical characteristics (volume, curvature, surface area, thickness) and surface-based functional metrics in chronic tinnitus patients. In total, 63 chronic tinnitus patients and 36 age-, sex- and education level-matched healthy control (HC) patients were enrolled in this study. Hearing levels in these two groups were comparable, and following magnetic resonance imaging (MRI) of these individuals, the DPABISurf software was used to compute cerebral cortex curvature, thickness, and surface area as well as surface-based functional metrics. The Tinnitus Handicap Inventory (THI), Tinnitus Handicap Questionary (THQ), and Visual Analogue Scales (VAS) were used to gauge participant tinnitus severity, while correlation analyses were conducted to evaluate associations between these different analyzed parameters. A significant increase in the regional homogeneity (ReHo) of the right secondary AC was detected in the tinnitus group relative to the HC group. There were also significant reductions in the cortical volume and surface area of the right secondary AC in the tinnitus group relative to the HC group (all P < 0.05). In addition, significant negative correlations between tinnitus pitch and the cortical area and volume of the right secondary AC were observed in the tinnitus group.
PMCID:9582700
PMID: 36276740
ISSN: 2405-8440
CID: 5359222

Exploring self-generated thoughts in a resting state with natural language processing

Li, Hui-Xian; Lu, Bin; Chen, Xiao; Li, Xue-Ying; Castellanos, Francisco Xavier; Yan, Chao-Gan
The present study seeks to examine individuals' stream of thought in real time. Specifically, we asked participants to speak their thoughts freely out loud during a typical resting-state condition. We first examined the feasibility and reliability of the method and found that the oral reporting method did not significantly change the frequency or content characteristics of self-generated thoughts; moreover, its test-retest reliability was high. Based on methodological feasibility, we combined natural language processing (NLP) with the Bidirectional Encoder Representation from Transformers (BERT) model to directly quantify thought content. We analyzed the divergence of self-generated thought content and expressions of sadness and empirically verified the validity and behavioral significance of the metrics calculated by BERT. Furthermore, we found that reflection and brooding could be differentiated by detecting the divergence of self-generated thought content and expressions of sadness, thus deepening our understanding of rumination and depression and providing a way to distinguish adaptive from maladaptive rumination. Finally, this study provides a new framework to examine self-generated thoughts in a resting state with NLP, extending research on the continuous content of instant self-generated thoughts with applicability to resting-state functional brain imaging.
PMID: 34647279
ISSN: 1554-3528
CID: 5068022

Reduced nucleus accumbens functional connectivity in reward network and default mode network in patients with recurrent major depressive disorder

Ding, Yu-Dan; Chen, Xiao; Chen, Zuo-Bing; Li, Le; Li, Xue-Ying; Castellanos, Francisco Xavier; Bai, Tong-Jian; Bo, Qi-Jing; Cao, Jun; Chang, Zhi-Kai; Chen, Guan-Mao; Chen, Ning-Xuan; Chen, Wei; Cheng, Chang; Cheng, Yu-Qi; Cui, Xi-Long; Duan, Jia; Fang, Yi-Ru; Gong, Qi-Yong; Hou, Zheng-Hua; Hu, Lan; Kuang, Li; Li, Feng; Li, Hui-Xian; Li, Kai-Ming; Li, Tao; Liu, Yan-Song; Liu, Zhe-Ning; Long, Yi-Cheng; Lu, Bin; Luo, Qing-Hua; Meng, Hua-Qing; Peng, Dai-Hui; Qiu, Hai-Tang; Qiu, Jiang; Shen, Yue-Di; Shi, Yu-Shu; Si, Tian-Mei; Tang, Yan-Qing; Wang, Chuan-Yue; Wang, Fei; Wang, Kai; Wang, Li; Wang, Xiang; Wang, Ying; Wang, Yu-Wei; Wu, Xiao-Ping; Wu, Xin-Ran; Xie, Chun-Ming; Xie, Guang-Rong; Xie, Hai-Yan; Xie, Peng; Xu, Xiu-Feng; Yang, Hong; Yang, Jian; Yao, Jia-Shu; Yao, Shu-Qiao; Yin, Ying-Ying; Yuan, Yong-Gui; Zang, Yu-Feng; Zhang, Ai-Xia; Zhang, Hong; Zhang, Ke-Rang; Zhang, Lei; Zhang, Zhi-Jun; Zhao, Jing-Ping; Zhou, Ru-Bai; Zhou, Yi-Ting; Zhu, Jun-Juan; Zhu, Zhi-Chen; Zou, Chao-Jie; Zuo, Xi-Nian; Yan, Chao-Gan; Guo, Wen-Bin
The nucleus accumbens (NAc) is considered a hub of reward processing and a growing body of evidence has suggested its crucial role in the pathophysiology of major depressive disorder (MDD). However, inconsistent results have been reported by studies on reward network-focused resting-state functional MRI (rs-fMRI). In this study, we examined functional alterations of the NAc-based reward circuits in patients with MDD via meta- and mega-analysis. First, we performed a coordinated-based meta-analysis with a new SDM-PSI method for all up-to-date rs-fMRI studies that focused on the reward circuits of patients with MDD. Then, we tested the meta-analysis results in the REST-meta-MDD database which provided anonymous rs-fMRI data from 186 recurrent MDDs and 465 healthy controls. Decreased functional connectivity (FC) within the reward system in patients with recurrent MDD was the most robust finding in this study. We also found disrupted NAc FCs in the DMN in patients with recurrent MDD compared with healthy controls. Specifically, the combination of disrupted NAc FCs within the reward network could discriminate patients with recurrent MDD from healthy controls with an optimal accuracy of 74.7%. This study confirmed the critical role of decreased FC in the reward network in the neuropathology of MDD. Disrupted inter-network connectivity between the reward network and DMN may also have contributed to the neural mechanisms of MDD. These abnormalities have potential to serve as brain-based biomarkers for individual diagnosis to differentiate patients with recurrent MDD from healthy controls.
PMCID:9170720
PMID: 35668086
ISSN: 2158-3188
CID: 5277702

Disrupted intrinsic functional brain topology in patients with major depressive disorder

Yang, Hong; Chen, Xiao; Chen, Zuo-Bing; Li, Le; Li, Xue-Ying; Castellanos, Francisco Xavier; Bai, Tong-Jian; Bo, Qi-Jing; Cao, Jun; Chang, Zhi-Kai; Chen, Guan-Mao; Chen, Ning-Xuan; Chen, Wei; Cheng, Chang; Cheng, Yu-Qi; Cui, Xi-Long; Duan, Jia; Fang, Yiru; Gong, Qi-Yong; Guo, Wen-Bin; Hou, Zheng-Hua; Hu, Lan; Kuang, Li; Li, Feng; Li, Hui-Xian; Li, Kai-Ming; Li, Tao; Liu, Yan-Song; Liu, Zhe-Ning; Long, Yi-Cheng; Lu, Bin; Luo, Qing-Hua; Meng, Hua-Qing; Peng, Daihui; Qiu, Hai-Tang; Qiu, Jiang; Shen, Yue-Di; Shi, Yu-Shu; Si, Tian-Mei; Tang, Yan-Qing; Wang, Chuan-Yue; Wang, Fei; Wang, Kai; Wang, Li; Wang, Xiang; Wang, Ying; Wang, Yu-Wei; Wu, Xiao-Ping; Wu, Xin-Ran; Xie, Chun-Ming; Xie, Guang-Rong; Xie, Hai-Yan; Xie, Peng; Xu, Xiu-Feng; Yang, Jian; Yao, Jia-Shu; Yao, Shu-Qiao; Yin, Ying-Ying; Yuan, Yong-Gui; Zang, Yu-Feng; Zhang, Ai-Xia; Zhang, Hong; Zhang, Ke-Rang; Zhang, Lei; Zhang, Zhi-Jun; Zhao, Jing-Ping; Zhou, Rubai; Zhou, Yi-Ting; Zhu, Jun-Juan; Zhu, Zhi-Chen; Zou, Chao-Jie; Zuo, Xi-Nian; Yan, Chao-Gan
Aberrant topological organization of whole-brain networks has been inconsistently reported in studies of patients with major depressive disorder (MDD), reflecting limited sample sizes. To address this issue, we utilized a big data sample of MDD patients from the REST-meta-MDD Project, including 821 MDD patients and 765 normal controls (NCs) from 16 sites. Using the Dosenbach 160 node atlas, we examined whole-brain functional networks and extracted topological features (e.g., global and local efficiency, nodal efficiency, and degree) using graph theory-based methods. Linear mixed-effect models were used for group comparisons to control for site variability; robustness of results was confirmed (e.g., multiple topological parameters, different node definitions, and several head motion control strategies were applied). We found decreased global and local efficiency in patients with MDD compared to NCs. At the nodal level, patients with MDD were characterized by decreased nodal degrees in the somatomotor network (SMN), dorsal attention network (DAN) and visual network (VN) and decreased nodal efficiency in the default mode network (DMN), SMN, DAN, and VN. These topological differences were mostly driven by recurrent MDD patients, rather than first-episode drug naive (FEDN) patients with MDD. In this highly powered multisite study, we observed disrupted topological architecture of functional brain networks in MDD, suggesting both locally and globally decreased efficiency in brain networks.
PMID: 34385597
ISSN: 1476-5578
CID: 5006242

Brain structural alterations in MDD patients with gastrointestinal symptoms: Evidence from the REST-meta-MDD project

Liu, Peng-Hong; Li, Yan; Zhang, Ai-Xia; Sun, Ning; Li, Gai-Zhi; Chen, Xiao; Bai, Tong-Jian; Bo, Qi-Jing; Chen, Guan-Mao; Chen, Ning-Xuan; Chen, Tao-Lin; Chen, Wei; Cheng, Chang; Cheng, Yu-Qi; Cui, Xi-Long; Duan, Jia; Fang, Yi-Ru; Gong, Qi-Yong; Guo, Wen-Bin; Hou, Zheng-Hua; Hu, Lan; Kuang, Li; Li, Feng; Li, Kai-Ming; Li, Tao; Liu, Yan-Song; Liu, Zhe-Ning; Long, Yi-Cheng; Luo, Qing-Hua; Meng, Hua-Qing; Peng, Dai-Hui; Qiu, Hai-Tang; Qiu, Jiang; Shen, Yue-Di; Shi, Yu-Shu; Wang, Fei; Wang, Kai; Wang, Li; Wang, Xiang; Wang, Ying; Wu, Xiao-Ping; Wu, Xin-Ran; Xie, Chun-Ming; Xie, Guang-Rong; Xie, Hai-Yan; Xie, Peng; Xu, Xiu-Feng; Yang, Hong; Yang, Jian; Yao, Jia-Shu; Yao, Shu-Qiao; Yin, Ying-Ying; Yuan, Yong-Gui; Zhang, Hong; Zhang, Lei; Zhang, Zhi-Jun; Zhou, Ru-Bai; Zhou, Yi-Ting; Zhu, Jun-Juan; Zou, Chao-Jie; Si, Tian-Mei; Zuo, Xi-Nian; Yan, Chao-Gan; Zhang, Ke-Rang
OBJECTIVE:While gastrointestinal (GI) symptoms are very common in patients with major depressive disorder (MDD), few studies have investigated the neural basis behind these symptoms. In this study, we sought to elucidate the neural basis of GI symptoms in MDD patients by analyzing the changes in regional gray matter volume (GMV) and gray matter density (GMD) in brain structure. METHOD/METHODS:Subjects were recruited from 13 clinical centers and categorized into three groups, each of which is based on the presence or absence of GI symptoms: the GI symptoms group (MDD patients with at least one GI symptom), the non-GI symptoms group (MDD patients without any GI symptoms), and the healthy control group (HCs). Structural magnetic resonance images (MRI) were collected of 335 patients in the GI symptoms group, 149 patients in the non-GI symptoms group, and 446 patients in the healthy control group. The 17-item Hamilton Depression Rating Scale (HAMD-17) was administered to all patients. Correlation analysis and logistic regression analysis were used to determine if there was a correlation between the altered brain regions and the clinical symptoms. RESULTS:There were significantly higher HAMD-17 scores in the GI symptoms group than that of the non-GI symptoms group (P < 0.001). Both GMV and GMD were significant different among the three groups for the bilateral superior temporal gyrus, bilateral middle temporal gyrus, left lingual gyrus, bilateral caudate nucleus, right Fusiform gyrus and bilateral Thalamus (GRF correction, cluster-P < 0.01, voxel-P < 0.001). Compared to the HC group, the GI symptoms group demonstrated increased GMV and GMD in the bilateral superior temporal gyrus, and the non-GI symptoms group demonstrated an increased GMV and GMD in the right superior temporal gyrus, right fusiform gyrus and decreased GMV in the right Caudate nucleus (GRF correction, cluster-P < 0.01, voxel-P < 0.001). Compared to the non-GI symptoms group, the GI symptoms group demonstrated significantly increased GMV and GMD in the bilateral thalamus, as well as decreased GMV in the bilateral superior temporal gyrus and bilateral insula lobe (GRF correction, cluster-P < 0.01, voxel-P < 0.001). While these changed brain areas had significantly association with GI symptoms (P < 0.001), they were not correlated with depressive symptoms (P > 0.05). Risk factors for gastrointestinal symptoms in MDD patients (p < 0.05) included age, increased GMD in the right thalamus, and decreased GMV in the bilateral superior temporal gyrus and left Insula lobe. CONCLUSION/CONCLUSIONS:MDD patients with GI symptoms have more severe depressive symptoms. MDD patients with GI symptoms exhibited larger GMV and GMD in the bilateral thalamus, and smaller GMV in the bilateral superior temporal gyrus and bilateral insula lobe that were correlated with GI symptoms, and some of them and age may contribute to the presence of GI symptoms in MDD patients.
PMID: 34119573
ISSN: 1878-4216
CID: 4924612

Eight-week antidepressant treatment reduces functional connectivity in first-episode drug-naïve patients with major depressive disorder

Li, Le; Su, Yun-Ai; Wu, Yan-Kun; Castellanos, Francisco Xavier; Li, Ke; Li, Ji-Tao; Si, Tian-Mei; Yan, Chao-Gan
Previous neuroimaging studies have revealed abnormal functional connectivity of brain networks in patients with major depressive disorder (MDD), but findings have been inconsistent. A recent big-data study found abnormal intrinsic functional connectivity within the default mode network in patients with recurrent MDD but not in first-episode drug-naïve patients with MDD. This study also provided evidence for reduced default mode network functional connectivity in medicated MDD patients, raising the question of whether previously observed abnormalities may be attributable to antidepressant effects. The present study (ClinicalTrials.gov identifier: NCT03294525) aimed to disentangle the effects of antidepressant treatment from the pathophysiology of MDD and test the medication normalization hypothesis. Forty-one first-episode drug-naïve MDD patients were administrated antidepressant medication (escitalopram or duloxetine) for 8 weeks, with resting-state functional connectivity compared between posttreatment and baseline. To assess the replicability of the big-data finding, we also conducted a cross-sectional comparison of resting-state functional connectivity between the MDD patients and 92 matched healthy controls. Both Network-Based Statistic analyses and large-scale network analyses revealed intrinsic functional connectivity decreases in extensive brain networks after treatment, indicating considerable antidepressant effects. Neither Network-Based Statistic analyses nor large-scale network analyses detected significant functional connectivity differences between treatment-naïve patients and healthy controls. In short, antidepressant effects are widespread across most brain networks and need to be accounted for when considering functional connectivity abnormalities in MDD.
PMID: 33638263
ISSN: 1097-0193
CID: 4802392