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PACS-integrated machine learning breast density classifier: clinical validation

Lewin, John; Schoenherr, Sven; Seebass, Martin; Lin, MingDe; Philpotts, Liane; Etesami, Maryam; Butler, Reni; Durand, Melissa; Heller, Samantha; Heacock, Laura; Moy, Linda; Tocino, Irena; Westerhoff, Malte
OBJECTIVE:To test the performance of a novel machine learning-based breast density tool. The tool utilizes a convolutional neural network to predict the BI-RADS based density assessment of a study. The clinical density assessments of 33,000 mammographic examinations (164,000 images) from one academic medical center (Site A) were used for training. MATERIALS AND METHODS/METHODS:This was an IRB approved HIPAA compliant study performed at two academic medical centers. The validation data set was composed of 500 studies from one site (Site A) and 700 from another (Site B). At Site A, each study was assessed by three breast radiologists and the majority (consensus) assessment was used as truth. At Site B, if the tool agreed with the clinical reading, then it was considered to have correctly predicted the clinical reading. In cases where the tool and the clinical reading disagreed, then the study was evaluated by three radiologists and the consensus reading was used as the clinical reading. RESULTS:For the classification into the four categories of the Breast Imaging Reporting and Data System (BI-RADS®), the AI classifier had an accuracy of 84.6% at Site A and 89.7% at Site B. For binary classification (dense vs. non-dense), the AI classifier had an accuracy of 94.4% at Site A and 97.4% at Site B. In no case did the classifier disagree with the consensus reading by more than one category. CONCLUSIONS:The automated breast density tool showed high agreement with radiologists' assessments of breast density.
PMID: 37421715
ISSN: 1873-4499
CID: 5539562

Improving Information Extraction from Pathology Reports using Named Entity Recognition

Zeng, Ken G; Dutt, Tarun; Witowski, Jan; Kranthi Kiran, G V; Yeung, Frank; Kim, Michelle; Kim, Jesi; Pleasure, Mitchell; Moczulski, Christopher; Lopez, L Julian Lechuga; Zhang, Hao; Harbi, Mariam Al; Shamout, Farah E; Major, Vincent J; Heacock, Laura; Moy, Linda; Schnabel, Freya; Pak, Linda M; Shen, Yiqiu; Geras, Krzysztof J
Pathology reports are considered the gold standard in medical research due to their comprehensive and accurate diagnostic information. Natural language processing (NLP) techniques have been developed to automate information extraction from pathology reports. However, existing studies suffer from two significant limitations. First, they typically frame their tasks as report classification, which restricts the granularity of extracted information. Second, they often fail to generalize to unseen reports due to variations in language, negation, and human error. To overcome these challenges, we propose a BERT (bidirectional encoder representations from transformers) named entity recognition (NER) system to extract key diagnostic elements from pathology reports. We also introduce four data augmentation methods to improve the robustness of our model. Trained and evaluated on 1438 annotated breast pathology reports, acquired from a large medical center in the United States, our BERT model trained with data augmentation achieves an entity F1-score of 0.916 on an internal test set, surpassing the BERT baseline (0.843). We further assessed the model's generalizability using an external validation dataset from the United Arab Emirates, where our model maintained satisfactory performance (F1-score 0.860). Our findings demonstrate that our NER systems can effectively extract fine-grained information from widely diverse medical reports, offering the potential for large-scale information extraction in a wide range of medical and AI research. We publish our code at https://github.com/nyukat/pathology_extraction.
PMCID:10350195
PMID: 37461545
CID: 5588752

Current Practices in Anticoagulation Management for Patients Undergoing Percutaneous Image-guided Breast Procedures

Brown, Theodore; Schafer, Leah; Qureshi, Muhammad Mustafa; Freer, Phoebe; Niell, Bethany L.; Yeh, Eren D.; Moy, Linda; Fishman, Michael D.C.; Slanetz, Priscilla J.
Objective: Given variability in how practices manage patients on antithrombotic medications, we undertook this study to understand the current practice of antithrombotic management for patients undergoing percutaneous breast and axillary procedures. Methods: A 20-item survey with multiple-choice and write-in options was emailed to 2094 active North American members of the Society of Breast Imaging (SBI) in March 2021. Data were collected anonymously and analyzed quantitatively, with free-text responses categorized by themes. Results: Three-hundred twenty-six of 2094 members (15.6%) completed the survey. Eighty-seven percent (274/313) reported having a policy for managing antithrombotic medications. Fifty-nine percent (185/312) reported routinely withholding medications before biopsy, more commonly in the Northeast and South (P = 0.08). Withholding of medications did not vary by lesion location (182/308, 59%, breast vs 181/308, 58.7%, axillary; P = 0.81). Respondents were statistically more likely to withhold medications if using a vacuum-assisted device for all classes of antithrombotic medications (P < 0.001). Up to 50.2% (100/199) on warfarin and 33.6% (66/196) on direct oral anticoagulants had medications withheld more stringently than guidelines suggest. Conclusion: Based on a survey of SBI members, breast imaging practices vary widely in antithrombotic management for image-guided breast and axillary procedures. Of the 60% who withhold antithrombotic medications, a minority comply with recommended withhold guidelines, placing at least some patients at potential risk for thrombotic events. Breast imaging radiologists should weigh the risks and benefits of withholding these medications, and if they elect to withhold should closely follow evidence-based guidelines to minimize the risks of this practice.
SCOPUS:85167988416
ISSN: 2631-6110
CID: 5567952

Standalone AI for Breast Cancer Detection at Screening Digital Mammography and Digital Breast Tomosynthesis: A Systematic Review and Meta-Analysis

Yoon, Jung Hyun; Strand, Fredrik; Baltzer, Pascal A T; Conant, Emily F; Gilbert, Fiona J; Lehman, Constance D; Morris, Elizabeth A; Mullen, Lisa A; Nishikawa, Robert M; Sharma, Nisha; Vejborg, Ilse; Moy, Linda; Mann, Ritse M
Background There is considerable interest in the potential use of artificial intelligence (AI) systems in mammographic screening. However, it is essential to critically evaluate the performance of AI before it can become a modality used for independent mammographic interpretation. Purpose To evaluate the reported standalone performances of AI for interpretation of digital mammography and digital breast tomosynthesis (DBT). Materials and Methods A systematic search was conducted in PubMed, Google Scholar, Embase (Ovid), and Web of Science databases for studies published from January 2017 to June 2022. Sensitivity, specificity, and area under the receiver operating characteristic curve (AUC) values were reviewed. Study quality was assessed using the Quality Assessment of Diagnostic Accuracy Studies 2 and Comparative (QUADAS-2 and QUADAS-C, respectively). A random effects meta-analysis and meta-regression analysis were performed for overall studies and for different study types (reader studies vs historic cohort studies) and imaging techniques (digital mammography vs DBT). Results In total, 16 studies that include 1 108 328 examinations in 497 091 women were analyzed (six reader studies, seven historic cohort studies on digital mammography, and four studies on DBT). Pooled AUCs were significantly higher for standalone AI than radiologists in the six reader studies on digital mammography (0.87 vs 0.81, P = .002), but not for historic cohort studies (0.89 vs 0.96, P = .152). Four studies on DBT showed significantly higher AUCs in AI compared with radiologists (0.90 vs 0.79, P < .001). Higher sensitivity and lower specificity were seen for standalone AI compared with radiologists. Conclusion Standalone AI for screening digital mammography performed as well as or better than radiologists. Compared with digital mammography, there is an insufficient number of studies to assess the performance of AI systems in the interpretation of DBT screening examinations. © RSNA, 2023 Supplemental material is available for this article. See also the editorial by Scaranelo in this issue.
PMID: 37219445
ISSN: 1527-1315
CID: 5538252

Detecting Common Sources of AI Bias: Questions to Ask When Procuring an AI Solution [Editorial]

Tejani, Ali S; Retson, Tara A; Moy, Linda; Cook, Tessa S
PMCID:10140635
PMID: 36943081
ISSN: 1527-1315
CID: 5464802

Women 75 Years Old or Older: To Screen or Not to Screen?

Lee, Cindy S; Lewin, Alana; Reig, Beatriu; Heacock, Laura; Gao, Yiming; Heller, Samantha; Moy, Linda
Breast cancer is the most common cancer in women, with the incidence rising substantially with age. Older women are a vulnerable population at increased risk of developing and dying from breast cancer. However, women aged 75 years and older were excluded from all randomized controlled screening trials, so the best available data regarding screening benefits and risks in this age group are from observational studies and modeling predictions. Benefits of screening in older women are the same as those in younger women: early detection of smaller lower-stage cancers, resulting in less invasive treatment and lower morbidity and mortality. Mammography performs significantly better in older women with higher sensitivity, specificity, cancer detection rate, and positive predictive values, accompanied by lower recall rates and false positives. The overdiagnosis rate is low, with benefits outweighing risks until age 90 years. Although there are conflicting national and international guidelines about whether to continue screening mammography in women beyond age 74 years, clinicians can use shared decision making to help women make decisions about screening and fully engage them in the screening process. For women aged 75 years and older in good health, continuing annual screening mammography will save the most lives. An informed discussion of the benefits and risks of screening mammography in older women needs to include each woman's individual values, overall health status, and comorbidities. This article will review the benefits, risks, and controversies surrounding screening mammography in women 75 years old and older and compare the current recommendations for screening this population from national and international professional organizations. ©RSNA, 2023 Quiz questions for this article are available through the Online Learning Center.
PMID: 37053102
ISSN: 1527-1323
CID: 5464252

Preoperative Breast MRI Is Not a Significant Prognostic Factor of Recurrence-Free Survival and Overall Survival in Young Women [Comment]

Kim, Eric; Moy, Linda
PMID: 36975823
ISSN: 1527-1315
CID: 5502592

New Screening Performance Metrics for Digital Breast Tomosynthesis in U.S. Community Practice from the Breast Cancer Surveillance Consortium [Comment]

Lee, Cindy S; Moy, Linda
PMID: 37039694
ISSN: 1527-1315
CID: 5502772

Climate Change and Sustainability [Editorial]

Hanneman, Kate; Araujo-Filho, Jose Arimateia Batista; Nomura, Cesar Higa; Jakubisin, Jenna; Moy, Linda
PMID: 37097140
ISSN: 1527-1315
CID: 5465082

Beyond Breast Density: Risk Measures for Breast Cancer in Multiple Imaging Modalities

Acciavatti, Raymond J; Lee, Su Hyun; Reig, Beatriu; Moy, Linda; Conant, Emily F; Kontos, Despina; Moon, Woo Kyung
Breast density is an independent risk factor for breast cancer. In digital mammography and digital breast tomosynthesis, breast density is assessed visually using the four-category scale developed by the American College of Radiology Breast Imaging Reporting and Data System (5th edition as of November 2022). Epidemiologically based risk models, such as the Tyrer-Cuzick model (version 8), demonstrate superior modeling performance when mammographic density is incorporated. Beyond just density, a separate mammographic measure of breast cancer risk is parenchymal textural complexity. With advancements in radiomics and deep learning, mammographic textural patterns can be assessed quantitatively and incorporated into risk models. Other supplemental screening modalities, such as breast US and MRI, offer independent risk measures complementary to those derived from mammography. Breast US allows the two components of fibroglandular tissue (stromal and glandular) to be visualized separately in a manner that is not possible with mammography. A higher glandular component at screening breast US is associated with higher risk. With MRI, a higher background parenchymal enhancement of the fibroglandular tissue has also emerged as an imaging marker for risk assessment. Imaging markers observed at mammography, US, and MRI are powerful tools in refining breast cancer risk prediction, beyond mammographic density alone.
PMID: 36749212
ISSN: 1527-1315
CID: 5420802