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The Role of OCT Criteria and Machine Learning in Multiple Sclerosis and Optic Neuritis Diagnosis

Kenney, Rachel C; Liu, Mengling; Hasanaj, Lisena; Joseph, Binu; Al-Hassan, Abdullah Abu; Balk, Lisanne J; Behbehani, Raed; Brandt, Alexander; Calabresi, Peter A; Frohman, Elliot; Frohman, Teresa C; Havla, Joachim; Hemmer, Bernhard; Jiang, Hong; Knier, Benjamin; Korn, Thomas; Leocani, Letizia; Martinez-Lapiscina, Elena Hernandez; Papadopoulou, Athina; Paul, Friedemann; Petzold, Axel; Pisa, Marco; Villoslada, Pablo; Zimmermann, Hanna; Thorpe, Lorna E; Ishikawa, Hiroshi; Schuman, Joel S; Wollstein, Gadi; Chen, Yu; Saidha, Shiv; Galetta, Steven; Balcer, Laura J
BACKGROUND AND OBJECTIVES/OBJECTIVE:Recent studies have suggested that inter-eye differences (IEDs) in peripapillary retinal nerve fiber layer (pRNFL) or ganglion cell+inner plexiform (GCIPL) thickness by spectral-domain optical coherence tomography (SD-OCT) may identify people with a history of unilateral optic neuritis (ON). However, this requires further validation. Machine learning classification may be useful for validating thresholds for OCT IEDs and for examining added utility for visual function tests, such as low-contrast letter acuity (LCLA), in the diagnosis of people with multiple sclerosis (PwMS) and for unilateral ON history. METHODS:Participants were from 11 sites within the International Multiple Sclerosis Visual System (IMSVISUAL) consortium. pRNFL and GCIPL thicknesses were measured using SD-OCT. A composite score combining OCT and visual measures was compared individual measurements to determine the best model to distinguish PwMS from controls. These methods were also used to distinguish those with history of ON among PwMS. ROC curve analysis was performed on a training dataset (2/3 of cohort), then applied to a testing dataset (1/3 of cohort). Support vector machine (SVM) analysis was used to assess whether machine learning models improved diagnostic capability of OCT. RESULTS:Among 1,568 PwMS and 552 controls, variable selection models identified GCIPL IED, average GCIPL thickness (both eyes), and binocular 2.5% LCLA as most important for classifying PwMS vs. controls. This composite score performed best, with AUC=0.89 (95% CI 0.85, 0.93), sensitivity=81% and specificity=80%. The composite score ROC curve performed better than any of the individual measures from the model (p<0.0001). GCIPL IED remained the best single discriminator of unilateral ON history among PwMS (AUC=0.77, 95% CI 0.71,0.83, sensitivity=68%, specificity=77%). SVM analysis performed comparably to standard logistic regression models. CONCLUSIONS:A composite score combining visual structure and function improved the capacity of SD-OCT to distinguish PwMS from controls. GCIPL IED best distinguished those with history of unilateral ON. SVM performed as well as standard statistical models for these classifications. CLASSIFICATION OF EVIDENCE/METHODS:The study provides Class III evidence that SD-OCT accurately distinguishes multiple sclerosis from normal controls as compared to clinical criteria.
PMID: 35764402
ISSN: 1526-632x
CID: 5281122

Neighborhood walkability and sex steroid hormone levels in women

India-Aldana, Sandra; Rundle, Andrew G; Clendenen, Tess V; Quinn, James W; Arslan, Alan A; Afanasyeva, Yelena; Koenig, Karen L; Liu, Mengling; Neckerman, Kathryn M; Thorpe, Lorna E; Zeleniuch-Jacquotte, Anne; Chen, Yu
BACKGROUND:Neighborhood walkability (NW) has been linked to increased physical activity, which in turn is associated with lower concentrations of sex hormones and higher concentration of SHBG in women. However, no study has directly examined the association of NW with female sex hormone levels. OBJECTIVE:We conducted a cross-sectional study to evaluate the association between NW and circulating levels of sex hormones and SHBG in pre- and post-menopausal women. METHODS:We included 797 premenopausal and 618 postmenopausal women from the New York University Women's Health Study (NYUWHS) who were healthy controls in previous nested case-control studies in which sex hormones (androstenedione, testosterone, DHEAS, estradiol and estrone) and SHBG had been measured in serum at enrollment. Baseline residential addresses were geo-coded and the Built Environment and Health Neighborhood Walkability Index (BEH-NWI) was calculated. Generalized Estimating Equations were used to assess the association between BEH-NWI and sex hormone and SHBG concentrations adjusting for individual- and neighborhood-level factors. RESULTS:In premenopausal women, a one standard deviation (SD) increment in BEH-NWI was associated with a 3.5% (95% CI 0.9%-6.1%) lower DHEAS concentration. In postmenopausal women, a one SD increment in BEH-NWI was related to an 8.5% (95% CI 5.4%-11.5%) lower level of DHEAS, a 3.7% (95% CI 0.5%-6.8%) lower level of testosterone, a 1.8% (95% CI 0.5%-3.0%) lower level of estrone, and a 4.2% (95% CI 2.7%-5.7%) higher level of SHBG. However, the associations with respect to DHEAS and estrone became apparent only after adjusting for neighborhood-level variables. Sensitivity analyses using fixed effects meta-analysis and inverse probability weighting accounting for potential selection bias yielded similar results. CONCLUSION/CONCLUSIONS:Our findings suggest that NW is associated with lower concentrations of androgens and estrone, and increased SHBG, in postmenopausal women, and lower levels of DHEAS in premenopausal women.
PMID: 36088991
ISSN: 1096-0953
CID: 5332702

Can blood pressure trajectories indicate who is at risk for developing hypertensive disorders of pregnancy? [Letter]

Rajeev, Pournami T; Kahn, Linda G; Trasande, Leonardo; Chen, Yu; Brubaker, Sara G; Mehta-Lee, Shilpi S
PMID: 36075526
ISSN: 2589-9333
CID: 5332572

Association between body mass index and risk of gastric cancer by anatomical and histological subtypes in over 500,000 East and Southeast Asian cohort participants

Jang, Jieun; Lee, Sangjun; Ko, Kwang-Pil; Abe, Sarah K; Rahman, Md Shafiur; Saito, Eiko; Islam, Md Rashedul; Sawada, Norie; Shu, Xiao-Ou; Koh, Woon-Puay; Sadakane, Atsuko; Tsuji, Ichiro; Kim, Jeongseon; Oze, Isao; Nagata, Chisato; Tsugane, Shoichiro; Cai, Hui; Yuan, Jian-Min; Gao, Yu-Tang; Ozasa, Kotaro; Matsuyama, Sanae; Kanemura, Seiki; Shin, Aesun; Ito, Hidemi; Wada, Keiko; Sugawara, Yumi; Chen, Yu; Ahsan, Habibul; Boffetta, Paolo; Chia, Kee Seng; Matsuo, Keitaro; Qiao, You-Lin; Rothman, Nathaniel; Zheng, Wei; Inoue, Manami; Kang, Daehee; Park, Sue K
BACKGROUND:This study was performed to investigate the association between body mass index (BMI) and gastric cancer (GC) in East and Southeast Asia where most of GC is non-cardia GC. METHODS:Based on 8,997 GC cases among the Asia Cohort Consortium participants from China, Japan, Korea, and Singapore (N=538,835), we assessed GC risk according to BMI by calculating hazard ratios (HRs) and 95% confidence intervals (CIs) using the Cox proportional hazard regression model. RESULTS:A U-shaped associations between BMI and GC risk were observed. GC risks in underweight group (<18.5 kg/m2) and in obesity group (≥27.5 kg/m2) were higher than reference BMI group (23-24.9 kg/m2) (HR=1.15, 95% CI 1.05-1.25 for underweight; HR=1.12, 95% CI 1.03-1.22 for obesity, respectively). The associations of underweight and obesity with GC risk were consistent in the analyses for non-cardia GC, intestinal type GC, and late onset GC. No significant association of underweight and obesity with the risk of cardia GC, diffuse type GC, and early onset GC was observed. Additionally, we found that the U-shaped association between BMI and GC risk remained in non-smokers, while only underweight was related to increased GC risk in smokers. CONCLUSIONS:BMI has a U-shaped association with GC risk in East and Southeast Asian population, especially for the non-cardia GC, intestinal type GC, and late onset GC. IMPACT/CONCLUSIONS:Future studies with consideration of anatomical location and histology of GC are needed to establish the association of underweight as well as obesity with GC risk.
PMID: 35793701
ISSN: 1538-7755
CID: 5280422

Association between body mass index and oesophageal cancer mortality: a pooled analysis of prospective cohort studies with >800 000 individuals in the Asia Cohort Consortium

Lee, Sangjun; Jang, Jieun; Abe, Sarah Krull; Rahman, Shafiur; Saito, Eiko; Islam, Rashedul; Gupta, Prakash C; Sawada, Norie; Tamakoshi, Akiko; Shu, Xiao-Ou; Koh, Woon-Puay; Sadakane, Atsuko; Tsuji, Ichiro; Kim, Jeongseon; Oze, Isao; Nagata, Chisato; You, San-Lin; Shin, Myung-Hee; Pednekar, Mangesh S; Tsugane, Shoichiro; Cai, Hui; Yuan, Jian-Min; Wen, Wanqing; Ozasa, Kotaro; Matsuyama, Sanae; Kanemura, Seiki; Shin, Aesun; Ito, Hidemi; Wada, Keiko; Sugawara, Yumi; Chen, Chien-Jen; Ahn, Yoon-Ok; Chen, Yu; Ahsan, Habibul; Boffetta, Paolo; Chia, Kee Seng; Matsuo, Keitaro; Qiao, You-Lin; Rothman, Nathaniel; Zheng, Wei; Inoue, Manami; Kang, Daehee; Park, Sue K
BACKGROUND:The association between body mass index (BMI) and oesophageal cancer (OC) has been consistently negative among Asians, whereas different associations based on histological OC subtypes have been observed in Europeans and North Americans. We examined the association between BMI and OC mortality in the Asia Cohort Consortium. METHODS:We performed a pooled analysis to evaluate the association between BMI and OC mortality among 842 630 Asians from 18 cohort studies. Cox regression models were used to estimate hazard ratios (HRs) and 95% CIs. RESULTS:A wide J-shaped association between BMI and overall OC mortality was observed. The OC mortality risk was increased for underweight (BMI <18.5 kg/m2: HR = 2.20, 95% CI 1.80-2.70) and extreme obesity (BMI ≥35 kg/m2: HR = 4.38, 95% CI 2.25-8.52) relative to the reference BMI (23-25 kg/m2). This association pattern was confirmed by several alternative analyses based on OC incidence and meta-analysis. A similar wide J-shaped association was observed in oesophageal squamous cell carcinoma (OSCC). Smoking and alcohol synergistically increased the OC mortality risk in underweight participants (HR = 6.96, 95% CI 4.54-10.67) relative to that in reference BMI participants not exposed to smoking and alcohol. CONCLUSION/CONCLUSIONS:Extreme obesity and being underweight were associated with an OC mortality risk among Asians. OC mortality and BMI formed a wide J-shaped association mirrored by OSCC mortality. Although the effect of BMI on OSCC and oesophageal adenocarcinoma mortality can be different in Asians, further research based on a large case-control study is recommended.
PMID: 35229874
ISSN: 1464-3685
CID: 5174302

Delta-like ligand 3-targeted radioimmunotherapy for neuroendocrine prostate cancer

Korsen, Joshua A; Gutierrez, Julia A; Tully, Kathryn M; Carter, Lukas M; Samuels, Zachary V; Khitrov, Samantha; Poirier, John T; Rudin, Charles M; Chen, Yu; Morris, Michael J; Bodei, Lisa; Pillarsetty, Nagavarakishore; Lewis, Jason S
Neuroendocrine prostate cancer (NEPC) is a lethal subtype of prostate cancer with limited meaningful treatment options. NEPC lesions uniquely express delta-like ligand 3 (DLL3) on their cell surface. Taking advantage of DLL3 overexpression, we developed and evaluated lutetium-177 (177Lu)-labeled DLL3-targeting antibody SC16 (177Lu-DTPA-SC16) as a treatment for NEPC. SC16 was functionalized with DTPA-CHX-A" chelator and radiolabeled with 177Lu to produce 177Lu-DTPA-SC16. Specificity and selectivity of 177Lu-DTPA-SC16 were evaluated in vitro and in vivo using NCI-H660 (NEPC, DLL3-positive) and DU145 (adenocarcinoma, DLL3-negative) cells and xenografts. Dose-dependent treatment efficacy and specificity of 177Lu-DTPA-SC16 radionuclide therapy were evaluated in H660 and DU145 xenograft-bearing mice. Safety of the agent was assessed by monitoring hematologic parameters. 177Lu-DTPA-SC16 showed high tumor uptake and specificity in H660 xenografts, with minimal uptake in DU145 xenografts. At all three tested doses of 177Lu-DTPA-SC16 (4.63, 9.25, and 27.75 MBq/mouse), complete responses were observed in H660-bearing mice; 9.25 and 27.75 MBq/mouse doses were curative. Even the lowest tested dose proved curative in five (63%) of eight mice, and recurring tumors could be successfully re-treated at the same dose to achieve complete responses. In DU145 xenografts, 177Lu-DTPA-SC16 therapy did not inhibit tumor growth. Platelets and hematocrit transiently dropped, reaching nadir at 2 to 3 wk. This was out of range only in the highest-dose cohort and quickly recovered to normal range by week 4. Weight loss was observed only in the highest-dose cohort. Therefore, our data demonstrate that 177Lu-DTPA-SC16 is a potent and safe radioimmunotherapeutic agent for testing in humans with NEPC.
PMCID:9271187
PMID: 35759660
ISSN: 1091-6490
CID: 5268822

A mass-balance model to assess arsenic exposure from multiple wells in Bangladesh

Huhmann, Linden B; Harvey, Charles F; Navas-Acien, Ana; Graziano, Joseph; Slavkovich, Vesna; Chen, Yu; Argos, Maria; Ahsan, Habibul; van Geen, Alexander
BACKGROUND:Water arsenic (As) sources beyond a rural household's primary well may be a significant source for certain individuals, including schoolchildren and men working elsewhere. OBJECTIVE:To improve exposure assessment by estimating the fraction of drinking water that comes from wells other than the household's primary well in a densely populated area. METHODS:area of Araihazar upazila, Bangladesh, for 11,197 participants in the Health Effects of Arsenic Longitudinal Study (HEALS). We estimate the fraction of water that participants drink from different wells by imposing a long-term mass-balance constraint for both As and water. RESULTS:The mass-balance model suggest that, on average, HEALS participants obtain 60-75% of their drinking water from their primary household wells and 25-40% from other wells, in addition to water from food and cellular respiration. Because of this newly quantified contribution from other wells, As in drinking water rather than rice was identified as the largest source of As exposure at baseline for HEALS participants with a primary household well containing ≤50 µg/L As. SIGNIFICANCE/CONCLUSIONS:Dose-response relationships for As based on water As should take into account other wells. The mass-balance approach could be applied to study other toxicants.
PMID: 34625714
ISSN: 1559-064x
CID: 5178522

Global DNA Methylation Profiles in Peripheral Blood of WTC-Exposed Community Members with Breast Cancer

Tuminello, Stephanie; Zhang, Yian; Yang, Lei; Durmus, Nedim; Snuderl, Matija; Heguy, Adriana; Zeleniuch-Jacquotte, Anne; Chen, Yu; Shao, Yongzhao; Reibman, Joan; Arslan, Alan A
Breast cancer represents the most common cancer diagnosis among World Trade Center (WTC)-exposed community members, residents, and cleanup workers enrolled in the WTC Environmental Health Center (WTC EHC). The primary aims of this study were (1) to compare blood DNA methylation profiles of WTC-exposed community members with breast cancer and WTC-unexposed pre-diagnostic breast cancer blood samples, and (2) to compare the DNA methylation differences among the WTC EHC breast cancer cases and WTC-exposed cancer-free controls. Gene pathway enrichment analyses were further conducted. There were significant differences in DNA methylation between WTC-exposed breast cancer cases and unexposed prediagnostic breast cancer cases. The top differentially methylated genes were Intraflagellar Transport 74 (IFT74), WD repeat-containing protein 90 (WDR90), and Oncomodulin (OCM), which are commonly upregulated in tumors. Probes associated with established tumor suppressor genes (ATM, BRCA1, PALB2, and TP53) were hypermethylated among WTC-exposed breast cancer cases compared to the unexposed group. When comparing WTC EHC breast cancer cases vs. cancer-free controls, there appeared to be global hypomethylation among WTC-exposed breast cancer cases compared to exposed controls. Functional pathway analysis revealed enrichment of several gene pathways in WTC-exposed breast cancer cases including endocytosis, proteoglycans in cancer, regulation of actin cytoskeleton, axon guidance, focal adhesion, calcium signaling, cGMP-PKG signaling, mTOR, Hippo, and oxytocin signaling. The results suggest potential epigenetic links between WTC exposure and breast cancer in local community members enrolled in the WTC EHC program.
PMCID:9105091
PMID: 35564499
ISSN: 1660-4601
CID: 5215082

Vascular endothelium as a target for perfluroalkyl substances (PFAs)

Wittkopp, Sharine; Wu, Fen; Windheim, Joseph; Robinson, Morgan; Kannan, Kurunthachalam; Katz, Stuart D; Chen, Yu; Newman, Jonathan D; [Levy, Natalie]
INTRODUCTION/BACKGROUND:Perfluoroalkyl substances (PFAs) are ubiquitous, anthropogenic organic compounds that have been linked with cardiovascular disease and cardiovascular risk factors. Older, long-chain PFAs have been phased out due to adverse cardiometabolic health effect and replaced by newer short-chain PFAs. However, emerging research suggests that short-chain PFAs may also have adverse cardiovascular effects. Non-invasive measures of vascular function can detect preclinical cardiovascular disease and serve as a useful surrogate for early CVD risk. We hypothesized that serum concentrations of PFAs would be associated with noninvasive measures of vascular function, carotid-femoral pulse wave velocity (PWV) and brachial artery reactivity testing (BART), in adults with non-occupational exposure to PFAs. METHODS:We measured serum concentrations of 14 PFAs with hybrid solid-phase extraction and ultrahigh-performance liquid chromatography-tandem mass spectrometry in 94 adult outpatients with no known cardiovascular disease. We collected clinical and demographic data; and measured vascular function, PWV and BART, using standard protocols. We assessed associations of individual PFAs with log-transformed BART and PWV using linear regression. We used weighted quantile sum regression to assess effects of correlated PFA mixtures on BART and PWV. RESULTS:Ten PFAs were measured above the limit of detection in >50% of participants. Each standard deviation increase in concentration of perfluoroheptanoic acid (PFHpA) was associated with 15% decrease in BART (95% CI: -28.5, -0.17). The weighted index of a mixture of PFAs with correlated concentrations was inversely associated with BART: each tertile increase in the weighted PFA mixture was associated with 25% lower BART, with 73% of the effect driven by PFHpA. In contrast, no PFAs or mixtures were associated with PWV. CONCLUSIONS:Serum concentration of PFHpA, a new, short-chain PFA, was associated with impaired vascular function among outpatients without CVD. Our findings support a potential adverse cardiovascular effect of newer, short-chain PFAs.
PMID: 35447152
ISSN: 1096-0953
CID: 5428772

Long-term safety of infants from mothers with chronic hepatitis B treated with tenofovir disoproxil in China

Pan, Calvin Q; Dai, Erhei; Duan, Zhongping; Han, Guorong; Zhao, Wenjing; Wang, Yuming; Zhang, Huaihong; Zhu, Baoshen; Jiang, Hongxiu; Zhang, Shuqin; Zhang, Xiaohu; Zou, Huaibin; Chen, Xiuli; Chen, Yu
OBJECTIVE:The physical and neuromental development of infants remains uncertain after fetal exposure to tenofovir disoproxil fumarate (TDF) for the prevention of mother-to-child transmission of HBV. We aimed to investigate the safety of TDF therapy during the third trimester of pregnancy. DESIGN/METHODS:Infants from a previous randomised controlled trial were recruited for our long-term follow-up (LTFU) study. Mothers with chronic hepatitis B were randomised to receive TDF therapy or no treatment during the third trimester. Infants' physical growth or malformation, bone mineral density (BMD) and neurodevelopment, as assessed using Bayley-III assessment, were examined at 192 weeks of age. RESULTS:Of 180 eligible infants, 176/180 (98%) were enrolled and 145/176 (82%) completed the LTFU (control group: 75; TDF-treated group: 70). In the TDF-treated group, the mean duration of fetal exposure to TDF was 8.57±0.53 weeks. Congenital malformation rates were similar between the two groups at week 192. The mean body weight of boys in the control and TDF-treated groups was significantly higher (19.84±3.46 kg vs. 18.47±2.34 kg; p=0.03) and within the normal range (18.48±2.35 kg vs. 17.80±2.50 kg; p=0.07), respectively, when compared with the national standard. Other prespecified outcomes (head circumference, height, BMD, and cognitive, motor, social-emotional, and adaptive behaviour measurements) were all comparable between the groups. CONCLUSION/CONCLUSIONS:Infants with fetal exposure to TDF had normal physical growth, BMD and neurodevelopment at week 192. Our findings provide evidence on the long-term safety of infants after fetal exposure to maternal TDF therapy for preventing hepatitis B transmission. TRIAL REGISTRATION NUMBER/BACKGROUND:NCT01488526.
PMID: 33789963
ISSN: 1468-3288
CID: 4862302