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302


A perception-based nanosensor platform to detect cancer biomarkers

Yaari, Zvi; Yang, Yoona; Apfelbaum, Elana; Cupo, Christian; Settle, Alex H; Cullen, Quinlan; Cai, Winson; Roche, Kara Long; Levine, Douglas A; Fleisher, Martin; Ramanathan, Lakshmi; Zheng, Ming; Jagota, Anand; Heller, Daniel A
[Figure: see text].
PMID: 34797711
ISSN: 2375-2548
CID: 5049722

CCNE1 amplification among metastatic sites in patients with gynecologic high-grade serous carcinoma

Margolis, Benjamin; Dao, Fanny; Licciardi, Michael; Misirlioglu, Selim; Olvera, Narciso; Ramaswami, Sitharam; Levine, Douglas A
Objective/UNASSIGNED:amplified high grade serous carcinoma (HGSC) cases to investigate the feasibility of targeting this alteration for therapeutic purposes. Methods/UNASSIGNED:allele fraction from targeted massively parallel sequencing. Results/UNASSIGNED:copy number across metastatic sites. Conclusions/UNASSIGNED:
PMCID:8391017
PMID: 34485660
ISSN: 2352-5789
CID: 5147332

Evaluation of treatment effects in patients with endometrial cancer and POLE mutations: An individual patient data meta-analysis

McAlpine, Jessica N; Chiu, Derek S; Nout, Remi A; Church, David N; Schmidt, Pascal; Lam, Stephanie; Leung, Samuel; Bellone, Stefania; Wong, Adele; Brucker, Sara Y; Lee, Cheng Han; Clarke, Blaise A; Huntsman, David G; Bernardini, Marcus Q; Ngeow, Joanne; Santin, Alessandro D; Goodfellow, Paul; Levine, Douglas A; Köbel, Martin; Kommoss, Stefan; Bosse, Tjalling; Gilks, C Blake; Talhouk, Aline
BACKGROUND:Endometrial cancers (ECs) with somatic mutations in DNA polymerase epsilon (POLE) are characterized by unfavorable pathological features, which prompt adjuvant treatment. Paradoxically, women with POLE-mutated EC have outstanding clinical outcomes, and this raises concerns of overtreatment. The authors investigated whether favorable outcomes were independent of treatment. METHODS:A PubMed search for POLE and endometrial was restricted to articles published between March 1, 2012, and March 1, 2018, that provided individual patient data (IPD), adjuvant treatment, and survival. Following the Preferred Reporting Items for Systematic Review and Meta-Analysis (PRISMA) reporting guidelines for IPD, the authors used univariate and multivariate one-stage meta-analyses with mixed effects Cox models (random effects for study cohorts) to infer the associations of treatment, traditional prognostic factors, and outcome, which was defined as the time from first diagnosis to any adverse event (progression/recurrence or death from EC). RESULTS:Three hundred fifty-nine women with POLE-mutated EC were identified; 294 (82%) had pathogenic mutations. Worse outcomes were demonstrated in patients with nonpathogenic POLE mutations (hazard ratio, 3.42; 95% confidence interval, 1.47-7.58; log-rank P < .01). Except for stage (P < .01), traditional prognosticators were not associated with progression/recurrence or death from disease. Adverse events were rare (11 progressions/recurrences and 3 disease-specific deaths). Salvage rates in patients who experienced recurrence were high and sustained, with 8 of 11 alive without evidence of disease (range, 5.5-14.2 years). Adjuvant treatment was not associated with outcome. CONCLUSIONS:Clinical outcomes for ECs with pathogenic POLE mutations are not associated with most traditional risk parameters, and patients do not appear to benefit from adjuvant therapy. The observed low rates of recurrence/progression and the high and sustained salvage rates raise the possibility of safely de-escalating treatment for these patients. LAY SUMMARY/UNASSIGNED:Ten percent of all endometrial cancers have mutations in the DNA repair gene DNA polymerase epsilon (POLE). Women who have endometrial cancers with true POLE mutations experience almost no recurrences or deaths from their cancer even when their tumors appear to have very unfavorable characteristics. Additional therapy (radiation and chemotherapy) does not appear to improve outcomes for women with POLE-mutated endometrial cancer, and this supports the move to less therapy and less associated toxicity. Diligent classification of endometrial cancers by molecular features provides valuable information to inform prognosis and to direct treatment/no treatment.
PMID: 33793971
ISSN: 1097-0142
CID: 4875522

Uterine carcinosarcomas: From pathology to practice

Toboni, Michael D; Crane, Erin K; Brown, Jubilee; Shushkevich, Alexander; Chiang, Sarah; Slomovitz, Brian M; Levine, Douglas A; Dowdy, Sean C; Klopp, Ann; Powell, Matthew A; Thaker, Premal H
OBJECTIVE:Uterine carcinosarcoma (UCS) is a rare but aggressive cancer. In early-stage disease data guiding treatment is sparse. The purpose of this review is to summarize the findings from the 2019 NRG oncology group summer symposium meeting as well as a review of the current literature, with a particular focus on molecular targets, ongoing clinical trials, and treatment of early and advanced/recurrent disease. METHODS:A combination of expert presentations and an extensive literature search was undertaken to summarize the literature in this review. MEDLINE was queried for peer-reviewed publications on UCS. This search was not limited by year or study design, but was limited to English language publications. ClinicalTrials.gov was queried for ongoing trials in UCS. RESULTS:UCS is a rare cancer that is biphasic, with the carcinomatous component driving its aggressive nature. Level 3 evidence regarding early stage disease is lacking, but retrospective data suggests adjuvant therapy is warranted. The recent results of GOG 261 have contributed valuable information towards treatment strategy, including use of paclitaxel and carboplatin for UCS. Clinical trials are ongoing to investigate new targeted agents in UCS. CONCLUSION/CONCLUSIONS:Ongoing endometrial cancer clinical trials now include UCS patients. In combination with advances in molecular profiling, this will provide patients with UCS improved therapeutic options. Until that time, surgical resection and traditional cytotoxic chemotherapy remains standard of care.
PMID: 34030871
ISSN: 1095-6859
CID: 4933872

Computational modeling of ovarian cancer dynamics suggests optimal strategies for therapy and screening

Gu, Shengqing; Lheureux, Stephanie; Sayad, Azin; Cybulska, Paulina; Hogen, Liat; Vyarvelska, Iryna; Tu, Dongsheng; Parulekar, Wendy R; Nankivell, Matthew; Kehoe, Sean; Chi, Dennis S; Levine, Douglas A; Bernardini, Marcus Q; Rosen, Barry; Oza, Amit; Brown, Myles; Neel, Benjamin G
High-grade serous tubo-ovarian carcinoma (HGSC) is a major cause of cancer-related death. Treatment is not uniform, with some patients undergoing primary debulking surgery followed by chemotherapy (PDS) and others being treated directly with chemotherapy and only having surgery after three to four cycles (NACT). Which strategy is optimal remains controversial. We developed a mathematical framework that simulates hierarchical or stochastic models of tumor initiation and reproduces the clinical course of HGSC. After estimating parameter values, we infer that most patients harbor chemoresistant HGSC cells at diagnosis and that, if the tumor burden is not too large and complete debulking can be achieved, PDS is superior to NACT due to better depletion of resistant cells. We further predict that earlier diagnosis of primary HGSC, followed by complete debulking, could improve survival, but its benefit in relapsed patients is likely to be limited. These predictions are supported by primary clinical data from multiple cohorts. Our results have clear implications for these key issues in HGSC management.
PMID: 34161278
ISSN: 1091-6490
CID: 4918462

Joint IARC/NCI International Cancer Seminar Series Report: Expert consensus on future directions for ovarian carcinoma research

Virani, Shama; Baiocchi, Glauco; Bowtell, David; Cabasag, Citadel J; Cho, Kathleen R; Fortner, Renée T; Fujiwara, Keiichi; Kim, Jae-Weon; Köbel, Martin; Kurtz, Jean-Emmanuel; Levine, Douglas A; Menon, Usha; Norquist, Barbara M; Pharoah, Paul D P; Sood, Anil K; Tworoger, Shelley T; Wentzensen, Nicolas; Chanock, Stephen J; Brennan, Paul; Trabert, Britton
Recently, ovarian cancer research has evolved considerably because of the emerging recognition that rather than a single disease, ovarian carcinomas comprise several different histotypes that vary by etiologic origin, risk factors, molecular profiles, therapeutic approaches, and clinical outcome. Despite significant progress in our understanding of the etiologic heterogeneity of ovarian cancer, as well as important clinical advances, it remains the eighth most frequently diagnosed cancer in women worldwide and the most fatal gynecologic cancer. The International Agency for Research on Cancer (IARC) and the US National Cancer Institute (NCI) jointly convened an expert panel on ovarian carcinoma to develop consensus research priorities based on evolving scientific discoveries. Expertise ranged from etiology, prevention, early detection, pathology, model systems, molecular characterization, and treatment/clinical management. This report summarizes the current state of knowledge and highlights expert consensus on future directions to continue advancing etiologic, epidemiologic, and prognostic research on ovarian carcinoma.
PMID: 34037709
ISSN: 1460-2180
CID: 4904952

Population-based targeted sequencing of 54 candidate genes identifies PALB2 as a susceptibility gene for high-grade serous ovarian cancer

Song, Honglin; Dicks, Ed M; Tyrer, Jonathan; Intermaggio, Maria; Chenevix-Trench, Georgia; Bowtell, David D; Traficante, Nadia; Group, Aocs; Brenton, James; Goranova, Teodora; Hosking, Karen; Piskorz, Anna; van Oudenhove, Elke; Doherty, Jen; Harris, Holly R; Rossing, Mary Anne; Duerst, Matthias; Dork, Thilo; Bogdanova, Natalia V; Modugno, Francesmary; Moysich, Kirsten; Odunsi, Kunle; Ness, Roberta; Karlan, Beth Y; Lester, Jenny; Jensen, Allan; Krüger Kjaer, Susanne; Høgdall, Estrid; Campbell, Ian G; Lázaro, Conxi; Pujara, Miguel Angel; Cunningham, Julie; Vierkant, Robert; Winham, Stacey J; Hildebrandt, Michelle; Huff, Chad; Li, Donghui; Wu, Xifeng; Yu, Yao; Permuth, Jennifer B; Levine, Douglas A; Schildkraut, Joellen M; Riggan, Marjorie J; Berchuck, Andrew; Webb, Penelope M; Group, Opal Study; Cybulski, Cezary; Gronwald, Jacek; Jakubowska, Anna; Lubinski, Jan; Alsop, Jennifer; Harrington, Patricia; Chan, Isaac; Menon, Usha; Pearce, Celeste L; Wu, Anna H; de Fazio, Anna; Kennedy, Catherine J; Goode, Ellen; Ramus, Susan; Gayther, Simon; Pharoah, Paul
PURPOSE/OBJECTIVE:The known epithelial ovarian cancer (EOC) susceptibility genes account for less than 50% of the heritable risk of ovarian cancer suggesting that other susceptibility genes exist. The aim of this study was to evaluate the contribution to ovarian cancer susceptibility of rare deleterious germline variants in a set of candidate genes. METHODS:We sequenced the coding region of 54 candidate genes in 6385 invasive EOC cases and 6115 controls of broad European ancestry. Genes with an increased frequency of putative deleterious variants in cases versus controls were further examined in an independent set of 14 135 EOC cases and 28 655 controls from the Ovarian Cancer Association Consortium and the UK Biobank. For each gene, we estimated the EOC risks and evaluated associations between germline variant status and clinical characteristics. RESULTS:in high-grade serous ovarian cancer is likely to represent a true positive. CONCLUSIONS:in cancer gene panels for ovarian cancer risk testing is unclear; much larger sample sizes will be needed to provide sufficiently precise estimates for clinical counselling.
PMID: 32546565
ISSN: 1468-6244
CID: 4614172

Mutated p53 portends improvement in outcomes when bevacizumab is combined with chemotherapy in advanced/recurrent endometrial cancer: An NRG Oncology study

Leslie, Kimberly K; Filiaci, Virginia L; Mallen, Adrianne R; Thiel, Kristina W; Devor, Eric J; Moxley, Katherine; Richardson, Debra; Mutch, David; Secord, Angeles Alvarez; Tewari, Krishnansu S; McDonald, Megan E; Mathews, Cara; Cosgrove, Casey; Dewdney, Summer; Casablanca, Yovanni; Jackson, Amanda; Rose, Peter G; Zhou, XunClare; McHale, Michael; Lankes, Heather; Levine, Douglas A; Aghajanian, Carol
BACKGROUND:Successfully combining targeted agents with chemotherapy is an important future goal for cancer therapy. However, an improvement in patient outcomes requires an enhanced understanding of the tumor biomarkers that predict for drug sensitivity. NRG Oncology/Gynecologic Oncology Group (GOG) Study GOG-86P was one of the first attempts to combine targeted agents (bevacizumab or temsirolimus) with chemotherapy in patients with advanced endometrial cancer. Herein we performed exploratory analyses to examine the relationship between mutations in TP53, the most commonly mutated gene in cancer, with outcomes on GOG-86P. METHODS:TP53 mutational status was determined and correlated with progression-free survival (PFS) and overall survival (OS) on GOG-86P. RESULTS:Mutations in TP53 were associated with improved PFS and OS for patients that received bevacizumab as compared to temsirolimus (PFS: HR 0.48, 95% CI 0.31, 0.75; OS: HR: 0.61, 95% CI 0.38, 0.98). By contrast, there was no statistically significant difference in PFS or OS between arms for cases with WT TP53. CONCLUSIONS:This exploratory study suggests that combining chemotherapy with bevacizumab, but not temsirolimus, may enhance PFS and OS for patients whose tumors harbor mutant p53. These data set the stage for larger clinical studies evaluating the potential of TP53 mutational status as a biomarker to guide choice of treatment for endometrial cancer patients. Clintrials.gov: NCT00977574.
PMID: 33541735
ISSN: 1095-6859
CID: 4799672

Angiogenesis in endometrial carcinoma: Therapies and biomarkers, current options, and future perspectives

Berger, Amnon A; Dao, Fanny; Levine, Douglas A
Endometrial carcinoma is the most common gynecologic malignancy and the fourth most prevalent cancer in women in the modern world. Despite a relatively high chance of surgical cure, for patients with advanced or recurrent disease there are few therapeutic options. Angiogenesis has been extensively studied ever since vascular endothelial growth factor (VEGF) was discovered in the 1980s. Several clinical trials of anti-angiogenic therapy in endometrial carcinoma have been conducted, with mixed results, and many researchers have tried to determine prognostic and therapeutic biomarkers. Recent trials, which shed new light on possible treatment biomarkers and efficacious combination therapies, are reviewed in this text. While we are still far from effectively tailoring anti-angiogenic treatment to each patient, these data have provided valuable insight and have put us on track for the discovery of novel opportunities for angiogenesis therapy in endometrial carcinoma.
PMID: 33375990
ISSN: 1095-6859
CID: 4771182

Genetically Defined, Syngeneic Organoid Platform for Developing Combination Therapies for Ovarian Cancer

Zhang, Shuang; Iyer, Sonia; Ran, Hao; Dolgalev, Igor; Gu, Shengqing; Wei, Wei; Foster, Connor J R; Loomis, Cynthia A; Olvera, Narciso; Dao, Fanny; Levine, Douglas A; Weinberg, Robert A; Neel, Benjamin G
The paucity of genetically informed, immune-competent tumor models impedes evaluation of conventional, targeted, and immune therapies. By engineering mouse fallopian tube epithelial organoids using lentiviral gene transduction and/or CRISPR/Cas9 mutagenesis, we generated multiple high grade serous tubo-ovarian carcinoma (HGSC) models exhibiting mutational combinations seen in HGSC patients. Detailed analysis of homologous recombination (HR)-proficient (Tp53-/-;Ccne1OE;Akt2OE ;KrasOE), HR-deficient (Tp53-/-;Brca1-/-;MycOE), and unclassified (Tp53-/-;Pten-/-;Nf1-/-) organoids revealed differences in in vitro properties (proliferation, differentiation, "secretome"), copy number aberrations, and tumorigenicity. Tumorigenic organoids had variable sensitivity to HGSC chemotherapeutics, evoked distinct immune microenvironments that could be modulated by neutralizing organoid-produced chemokines/cytokines. These findings enabled development of a chemotherapy/immunotherapy regimen that yielded durable, T-cell dependent responses in Tp53-/-;Ccne1OE;Akt2OE;Kras HGSC; by contrast, Tp53-/-;Pten-/-;Nf1-/- tumors failed to respond. Mouse and human HGSC models showed genotype-dependent similarities in chemosensitivity, secretome, and immune microenvironment. Genotype-informed, syngeneic organoid models could provide a platform for the rapid evaluation of tumor biology and therapeutics.
PMID: 33158842
ISSN: 2159-8290
CID: 4662952