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Multi-omic biomarker identification and validation for diagnosing warzone-related post-traumatic stress disorder

Dean, Kelsey R; Hammamieh, Rasha; Mellon, Synthia H; Abu-Amara, Duna; Flory, Janine D; Guffanti, Guia; Wang, Kai; Daigle, Bernie J; Gautam, Aarti; Lee, Inyoul; Yang, Ruoting; Almli, Lynn M; Bersani, F Saverio; Chakraborty, Nabarun; Donohue, Duncan; Kerley, Kimberly; Kim, Taek-Kyun; Laska, Eugene; Young Lee, Min; Lindqvist, Daniel; Lori, Adriana; Lu, Liangqun; Misganaw, Burook; Muhie, Seid; Newman, Jennifer; Price, Nathan D; Qin, Shizhen; Reus, Victor I; Siegel, Carole; Somvanshi, Pramod R; Thakur, Gunjan S; Zhou, Yong; Hood, Leroy; Ressler, Kerry J; Wolkowitz, Owen M; Yehuda, Rachel; Jett, Marti; Doyle, Francis J; Marmar, Charles
Post-traumatic stress disorder (PTSD) impacts many veterans and active duty soldiers, but diagnosis can be problematic due to biases in self-disclosure of symptoms, stigma within military populations, and limitations identifying those at risk. Prior studies suggest that PTSD may be a systemic illness, affecting not just the brain, but the entire body. Therefore, disease signals likely span multiple biological domains, including genes, proteins, cells, tissues, and organism-level physiological changes. Identification of these signals could aid in diagnostics, treatment decision-making, and risk evaluation. In the search for PTSD diagnostic biomarkers, we ascertained over one million molecular, cellular, physiological, and clinical features from three cohorts of male veterans. In a discovery cohort of 83 warzone-related PTSD cases and 82 warzone-exposed controls, we identified a set of 343 candidate biomarkers. These candidate biomarkers were selected from an integrated approach using (1) data-driven methods, including Support Vector Machine with Recursive Feature Elimination and other standard or published methodologies, and (2) hypothesis-driven approaches, using previous genetic studies for polygenic risk, or other PTSD-related literature. After reassessment of ~30% of these participants, we refined this set of markers from 343 to 28, based on their performance and ability to track changes in phenotype over time. The final diagnostic panel of 28 features was validated in an independent cohort (26 cases, 26 controls) with good performance (AUC = 0.80, 81% accuracy, 85% sensitivity, and 77% specificity). The identification and validation of this diverse diagnostic panel represents a powerful and novel approach to improve accuracy and reduce bias in diagnosing combat-related PTSD.
PMID: 31501510
ISSN: 1476-5578
CID: 4071472

Mental Health Disorders Related to COVID-19-Related Deaths

Simon, Naomi M; Saxe, Glenn N; Marmar, Charles R
PMID: 33044510
ISSN: 1538-3598
CID: 4632452

Gabapentin Enacarbil Extended-Release Versus Placebo: A Likely Responder Reanalysis of a Randomized Clinical Trial

Laska, Eugene M; Siegel, Carole E; Lin, Ziqiang; Bogenschutz, Michael; Marmar, Charles R
BACKGROUND:We reanalyzed a multisite 26-week randomized double-blind placebo-controlled clinical trial of 600 mg twice-a-day Gabapentin Enacarbil Extended-Release (GE-XR), a gabapentin prodrug, designed to evaluate safety and efficacy for treating alcohol use disorder. In the original analysis (n = 338), published in 2019, GE-XR did not differ from placebo. Our aim is to advance precision medicine by identifying likely responders to GE-XR from the trial data and to determine for likely responders if GE-XR is causally superior to placebo. METHODS:The primary outcome measure in the reanalysis is the reduction from baseline of the number of heavy drinking days (ΔHDD). Baseline features including measures of alcohol use, anxiety, depression, mood states, sleep, and impulsivity were used in a random forest (RF) model to predict ΔHDD to treatment with GE-XR based on those assigned to GE-XR. The resulting RF model was used to obtain predicted outcomes for those randomized to GE-XR and counterfactually to those randomized to placebo. Likely responders to GE-XR were defined as those predicted to have a reduction of 14 days or more. Tests of causal superiority of GE-XR to placebo were obtained for likely responders and for the whole sample. RESULTS:For likely responders, GE-XR was causally superior to placebo (p < 0.0033), while for the whole sample, there was no difference. Likely responders exhibited improved outcomes for the related outcomes of percent HDD and drinks per week. Compared with unlikely responders, at baseline likely responders had higher HDDs; lower levels of anxiety, depression, and general mood disturbances; and higher levels of cognitive and motor impulsivity. CONCLUSIONS:There are substantial causal benefits of treatment with GE-XR for a subset of patients predicted to be likely responders. The likely responder statistical paradigm is a promising approach for analyzing randomized clinical trials to advance personalized treatment.
PMCID:7540534
PMID: 33460198
ISSN: 1530-0277
CID: 4760242

Computational causal discovery for post-traumatic stress in police officers

Saxe, Glenn N; Ma, Sisi; Morales, Leah J; Galatzer-Levy, Isaac R; Aliferis, Constantin; Marmar, Charles R
This article reports on a study aimed to elucidate the complex etiology of post-traumatic stress (PTS) in a longitudinal cohort of police officers, by applying rigorous computational causal discovery (CCD) methods with observational data. An existing observational data set was used, which comprised a sample of 207 police officers who were recruited upon entry to police academy training. Participants were evaluated on a comprehensive set of clinical, self-report, genetic, neuroendocrine and physiological measures at baseline during academy training and then were re-evaluated at 12 months after training was completed. A data-processing pipeline-the Protocol for Computational Causal Discovery in Psychiatry (PCCDP)-was applied to this data set to determine a causal model for PTS severity. A causal model of 146 variables and 345 bivariate relations was discovered. This model revealed 5 direct causes and 83 causal pathways (of four steps or less) to PTS at 12 months of police service. Direct causes included single-nucleotide polymorphisms (SNPs) for the Histidine Decarboxylase (HDC) and Mineralocorticoid Receptor (MR) genes, acoustic startle in the context of low perceived threat during training, peritraumatic distress to incident exposure during first year of service, and general symptom severity during training at 1 year of service. The application of CCD methods can determine variables and pathways related to the complex etiology of PTS in a cohort of police officers. This knowledge may inform new approaches to treatment and prevention of critical incident related PTS.
PMID: 32778671
ISSN: 2158-3188
CID: 4556122

A validated predictive algorithm of post-traumatic stress course following emergency department admission after a traumatic stressor

Schultebraucks, Katharina; Shalev, Arieh Y; Michopoulos, Vasiliki; Grudzen, Corita R; Shin, Soo-Min; Stevens, Jennifer S; Maples-Keller, Jessica L; Jovanovic, Tanja; Bonanno, George A; Rothbaum, Barbara O; Marmar, Charles R; Nemeroff, Charles B; Ressler, Kerry J; Galatzer-Levy, Isaac R
Annually, approximately 30 million patients are discharged from the emergency department (ED) after a traumatic event1. These patients are at substantial psychiatric risk, with approximately 10-20% developing one or more disorders, including anxiety, depression or post-traumatic stress disorder (PTSD)2-4. At present, no accurate method exists to predict the development of PTSD symptoms upon ED admission after trauma5. Accurate risk identification at the point of treatment by ED services is necessary to inform the targeted deployment of existing treatment6-9 to mitigate subsequent psychopathology in high-risk populations10,11. This work reports the development and validation of an algorithm for prediction of post-traumatic stress course over 12 months using two independently collected prospective cohorts of trauma survivors from two level 1 emergency trauma centers, which uses routinely collectible data from electronic medical records, along with brief clinical assessments of the patient's immediate stress reaction. Results demonstrate externally validated accuracy to discriminate PTSD risk with high precision. While the predictive algorithm yields useful reproducible results on two independent prospective cohorts of ED patients, future research should extend the generalizability to the broad, clinically heterogeneous ED population under conditions of routine medical care.
PMID: 32632194
ISSN: 1546-170x
CID: 4518092

Effect of Combat Exposure and Posttraumatic Stress Disorder on Telomere Length and Amygdala Volume

Kang, Jee In; Mueller, Susanne G; Wu, Gwyneth W Y; Lin, Jue; Ng, Peter; Yehuda, Rachel; Flory, Janine D; Abu-Amara, Duna; Reus, Victor I; Gautam, Aarti; Hammamieh, Rasha; Doyle, Francis J; Jett, Marti; Marmar, Charles R; Mellon, Synthia H; Wolkowitz, Owen M
BACKGROUND:Traumatic stress can adversely affect physical and mental health through neurobiological stress response systems. We examined the effects of trauma exposure and posttraumatic stress disorder (PTSD) on telomere length, a biomarker of cellular aging, and volume of the amygdala, a key structure of stress regulation, in combat-exposed veterans. In addition, the relationships of psychopathological symptoms and autonomic function with telomere length and amygdala volume were examined. METHODS:Male combat veterans were categorized as having PTSD diagnosis (n = 102) or no lifetime PTSD diagnosis (n = 111) based on the Clinician-Administered PTSD Scale. Subjects were assessed for stress-related psychopathology, trauma severity, autonomic function, and amygdala volumes by magnetic resonance imaging. RESULTS:A significant interaction was found between trauma severity and PTSD status for telomere length and amygdala volume after adjusting for multiple confounders. Subjects with PTSD showed shorter telomere length and larger amygdala volume than those without PTSD among veterans exposed to high trauma, while there was no significant group difference in these parameters among those exposed to low trauma. Among veterans exposed to high trauma, greater telomere shortening was significantly correlated with greater norepinephrine, and larger amygdala volume was correlated with more severe psychological symptoms and higher heart rates. CONCLUSIONS:These data suggest that the intensity of the index trauma event plays an important role in interacting with PTSD symptomatology and autonomic activity in predicting telomere length and amygdala volume. These results highlight the importance of trauma severity and PTSD status in predicting certain biological outcomes.
PMID: 32439402
ISSN: 2451-9030
CID: 4444652

Predeployment neurocognitive functioning predicts postdeployment posttraumatic stress in Army personnel

Samuelson, Kristin W; Newman, Jennifer; Abu Amara, Duna; Qian, Meng; Li, Meng; Schultebraucks, Katharina; Purchia, Emily; Genfi, Afia; Laska, Eugene; Siegel, Carole; Hammamieh, Rasha; Gautam, Aarti; Jett, Marti; Marmar, Charles R
OBJECTIVE:The Fort Campbell Cohort study was designed to assess predeployment biological and behavioral markers and build predictive models to identify risk and resilience for posttraumatic stress disorder (PTSD) following deployment. This article addresses neurocognitive functioning variables as potential prospective predictors. METHOD/METHODS:In a sample of 403 soldiers, we examined whether PTSD symptom severity (using the PTSD Checklist) as well as posttraumatic stress trajectories could be prospectively predicted by measures of executive functioning (using two web-based tasks from WebNeuro) assessed predeployment. RESULTS:Controlling for age, gender, education, prior number of deployments, childhood trauma exposure, and PTSD symptom severity at Phase 1, linear regression models revealed that predeployment sustained attention and inhibitory control performance were significantly associated with postdeployment PTSD symptom severity. We also identified two posttraumatic stress trajectories utilizing latent growth mixture models. The "resilient" group consisted of 90.9% of the soldiers who exhibited stable low levels of PTSD symptoms from pre- to postdeployment. The "increasing" group consisted of 9.1% of the soldiers, who exhibited an increase in PTSD symptoms following deployment, crossing a threshold for diagnosis based on PTSD Checklist scores. Logistic regression models predicting trajectory revealed a similar pattern of findings as the linear regression models, in which predeployment sustained attention (95% CI of odds ratio: 1.0109, 1.0558) and inhibitory control (95% CI: 1.0011, 1.0074) performance were significantly associated with postdeployment PTSD trajectory. CONCLUSIONS:These findings have clinical implications for understanding the pathogenesis of PTSD and building preventative programs for military personnel. (PsycINFO Database Record (c) 2019 APA, all rights reserved).
PMID: 31789568
ISSN: 1931-1559
CID: 4217962

First-line Psychotherapies for Military-Related PTSD

Steenkamp, Maria M; Litz, Brett T; Marmar, Charles R
PMID: 31999301
ISSN: 1538-3598
CID: 4294312

Genomic influences on self-reported childhood maltreatment

Dalvie, Shareefa; Maihofer, Adam X; Coleman, Jonathan R I; Bradley, Bekh; Breen, Gerome; Brick, Leslie A; Chen, Chia-Yen; Choi, Karmel W; Duncan, Laramie E; Guffanti, Guia; Haas, Magali; Harnal, Supriya; Liberzon, Israel; Nugent, Nicole R; Provost, Allison C; Ressler, Kerry J; Torres, Katy; Amstadter, Ananda B; Bryn Austin, S; Baker, Dewleen G; Bolger, Elizabeth A; Bryant, Richard A; Calabrese, Joseph R; Delahanty, Douglas L; Farrer, Lindsay A; Feeny, Norah C; Flory, Janine D; Forbes, David; Galea, Sandro; Gautam, Aarti; Gelernter, Joel; Hammamieh, Rasha; Jett, Marti; Junglen, Angela G; Kaufman, Milissa L; Kessler, Ronald C; Khan, Alaptagin; Kranzler, Henry R; Lebois, Lauren A M; Marmar, Charles; Mavissakalian, Matig R; McFarlane, Alexander; Donnell, Meaghan O'; Orcutt, Holly K; Pietrzak, Robert H; Risbrough, Victoria B; Roberts, Andrea L; Rothbaum, Alex O; Roy-Byrne, Peter; Ruggiero, Ken; Seligowski, Antonia V; Sheerin, Christina M; Silove, Derrick; Smoller, Jordan W; Stein, Murray B; Teicher, Martin H; Ursano, Robert J; Van Hooff, Miranda; Winternitz, Sherry; Wolff, Jonathan D; Yehuda, Rachel; Zhao, Hongyu; Zoellner, Lori A; Stein, Dan J; Koenen, Karestan C; Nievergelt, Caroline M
Childhood maltreatment is highly prevalent and serves as a risk factor for mental and physical disorders. Self-reported childhood maltreatment appears heritable, but the specific genetic influences on this phenotype are largely unknown. The aims of this study were to (1) identify genetic variation associated with self-reported childhood maltreatment, (2) estimate SNP-based heritability (h2snp), (3) assess predictive value of polygenic risk scores (PRS) for childhood maltreatment, and (4) quantify genetic overlap of childhood maltreatment with mental and physical health-related phenotypes, and condition the top hits from our analyses when such overlap is present. Genome-wide association analysis for childhood maltreatment was undertaken, using a discovery sample from the UK Biobank (UKBB) (n = 124,000) and a replication sample from the Psychiatric Genomics Consortium-posttraumatic stress disorder group (PGC-PTSD) (n = 26,290). h2snp for childhood maltreatment and genetic correlations with mental/physical health traits were calculated using linkage disequilibrium score regression. PRS was calculated using PRSice and mtCOJO was used to perform conditional analysis. Two genome-wide significant loci associated with childhood maltreatment (rs142346759, p = 4.35 × 10-8, FOXP1; rs10262462, p = 3.24 × 10-8, FOXP2) were identified in the discovery dataset but were not replicated in PGC-PTSD. h2snp for childhood maltreatment was ~6% and the PRS derived from the UKBB was significantly predictive of childhood maltreatment in PGC-PTSD (r2 = 0.0025; p = 1.8 × 10-15). The most significant genetic correlation of childhood maltreatment was with depressive symptoms (rg = 0.70, p = 4.65 × 10-40), although we show evidence that our top hits may be specific to childhood maltreatment. This is the first large-scale genetic study to identify specific variants associated with self-reported childhood maltreatment. Speculatively, FOXP genes might influence externalizing traits and so be relevant to childhood maltreatment. Alternatively, these variants may be associated with a greater likelihood of reporting maltreatment. A clearer understanding of the genetic relationships of childhood maltreatment, including particular abuse subtypes, with a range of phenotypes, may ultimately be useful in in developing targeted treatment and prevention strategies.
PMID: 32066696
ISSN: 2158-3188
CID: 4313092

An Electroencephalography Connectomic Profile of Posttraumatic Stress Disorder

Toll, Russell T; Wu, Wei; Naparstek, Sharon; Zhang, Yu; Narayan, Manjari; Patenaude, Brian; De Los Angeles, Carlo; Sarhadi, Kasra; Anicetti, Nicole; Longwell, Parker; Shpigel, Emmanuel; Wright, Rachael; Newman, Jennifer; Gonzalez, Bryan; Hart, Roland; Mann, Silas; Abu-Amara, Duna; Sarhadi, Kamron; Cornelssen, Carena; Marmar, Charles; Etkin, Amit
OBJECTIVE/UNASSIGNED:The authors sought to identify brain regions whose frequency-specific, orthogonalized resting-state EEG power envelope connectivity differs between combat veterans with posttraumatic stress disorder (PTSD) and healthy combat-exposed veterans, and to determine the behavioral correlates of connectomic differences. METHODS/UNASSIGNED:The authors first conducted a connectivity method validation study in healthy control subjects (N=36). They then conducted a two-site case-control study of veterans with and without PTSD who were deployed to Iraq and/or Afghanistan. Healthy individuals (N=95) and those meeting full or subthreshold criteria for PTSD (N=106) underwent 64-channel resting EEG (eyes open and closed), which was then source-localized and orthogonalized to mitigate effects of volume conduction. Correlation coefficients between band-limited source-space power envelopes of different regions of interest were then calculated and corrected for multiple comparisons. Post hoc correlations of connectomic abnormalities with clinical features and performance on cognitive tasks were conducted to investigate the relevance of the dysconnectivity findings. RESULTS/UNASSIGNED:Seventy-four brain region connections were significantly reduced in PTSD (all in the eyes-open condition and predominantly using the theta carrier frequency). Underconnectivity of the orbital and anterior middle frontal gyri were most prominent. Performance differences in the digit span task mapped onto connectivity between 25 of the 74 brain region pairs, including within-network connections in the dorsal attention, frontoparietal control, and ventral attention networks. CONCLUSIONS/UNASSIGNED:Robust PTSD-related abnormalities were evident in theta-band source-space orthogonalized power envelope connectivity, which furthermore related to cognitive deficits in these patients. These findings establish a clinically relevant connectomic profile of PTSD using a tool that facilitates the lower-cost clinical translation of network connectivity research.
PMID: 31964161
ISSN: 1535-7228
CID: 4273872