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Segmentation of breast from T1-weighted MRI: Error analysis [Meeting Abstract]

Rusinek, H; Mikheev, A; Heacock, L; Melsaether, A; Moy, L
Purpose Our aim was to evaluate the accuracy of a new algorithm to automatically delineate the breast region from the chest on T1-weighted, non-fat-suppressed MR images. This process is also referred to as the chest wall detection. There is a general agreement that this step is very difficult to automate. At the same time it is crucially needed for clinically important processing workflows [1]. These workflows include 3D measurement of breast density and of the breast parenchymal enhancement. Both measures reveal patients at risk of breast cancer [2]. Manually traced chest wall was used as the ground truth when estimating the segmentation errors. Segmentation accuracy was evaluated using the Hausdorff distance and the volumetric error. We also estimated the inter-observer agreement in defining the chest wall surface. Methods The program starts by generating the mid-sagittal 2D section by averaging the signal across 20 mm thick mid-sagittal slab. We determine the chest wall boundary on this image by modeling the signal profiles along the antero-posterior direction as a sequence of three tissues: background air, skin and fat layer, muscle. Non-uniformity correction is then applied to the entire 3D volume. The mid-sagittal boundary, represented as a polyline P, is then propagated in two opposite (left and right) directions. At each sagittal section the algorithm adjusts the control points of the polyline received from an adjacent slice. The adjustment is estimated from the weighted sum of six measures that combine specific local and global signal statistics. These include: the local gradient, the signal uniformity, the gradient similarity, the contour-gradient consistency, the global contour uniformity and the normal vector consistency. At each iteration we form a candidate shift vector, we apply it to shift P to its new position, and then we smooth the resulting polyline. The process terminates when the magnitude of the shift becomes negligible or when the specified number of iterations is exceeded. Two metrics were used to estimate accuracy. The conventional volumetric error was obtained by dividing the volume DV of misclassified breast voxels over the true breast volume V. The Hausdorff distance, HD, is the distance between each voxel on the true breast/ chest wall border and the closest boundary voxel produced by the algorithm. HD is averaged over the entire chest wall surface. From a clinical database of screening breast MRIs acquired at our medical center we have randomly selected 16 test exams. The selection was constrained to enforce that there were four exams in each of the four breast density categories [3]. Bilateral breasts were imaged on Siemens 3T Magnetom Trio equipped with a 7-element surface breast coil. The parameters of the T1-weighted non-fat-suppressed sequence were: TR = 4.74 ms, TE = 1.79 ms, FOV = 320 mm2, matrix = 448 9 358 9*150, 0.7 9 0.7 9 1.1 mm voxels, TA = 2-3 min. Three experts in breast and chest anatomy drew contours to separate the chest wall from the breast (Fig. 1). The pectoralis fascia and pectoralis muscles were used as reference points for the anterolateral borders. The medial border of the axilla was the posterolateral boundary. The axillary tail was considered as the breast tissue. The ground truth references were constructed by a software designed to perform voxel-based ROI averaging [4]. (Figure Presented) Results The border distance error HD was 0.84 +/- 0.8 mm (average +/- standard deviation) and ranged from 0.57 to 2.45 mm. The volume error DV/V was 6.43 +/- 6.82%. There was no correlation between the HD and DV/V (R2 = 0.23, p = 0.12). The test cases covered a wide range 411-3439 ml of breast volumes. There was a significant positive correlation (R2 = 0.40, p = 0.02) between volumetric error and the true breast volume V, but there was no correlation between HD and V (R2 = 0.08, p = 0.44). The average execution time was under 1.5 min per case on a standard 8-core workstation. The inter-observer agreement measured in term of HD was 0.56 +/- 0.15 mm (average +/- standard deviation). The agreement expressed in terms of volumetric discrepancy (relative to breast volume) was 1.61% +/- 0.71%. Conclusion Breast density, defined as fraction of fibroglandular tissue, and postcontrast enhancement, are considered significant risk factors for breast cancer. These MRI measures are recommended for radiologic reports and are promising cancer biomarkers. Radiologists currently visually estimate these measure. Unfortunately, readers agreement for qualitative evaluation is only fair, requiring better standardization and reproducibility. Computer-assisted quantitative assessment is needed, but the task is challenging due to image nonuniformity (breast coils cause loss of MR signal in remote regions) and to the anatomical complexity of chest wall boundary (Fig. 2). (Figure Presented) Given its accuracy and speed, our breast segmentation method appears to be ready for clinical use as a part of larger workflow to generate routine diagnostic reports
EMBASE:622627472
ISSN: 1861-6429
CID: 3179282

Voxelwise analysis of simultaneously acquired and spatially correlated 18 F-fluorodeoxyglucose (FDG)-PET and intravoxel incoherent motion metrics in breast cancer

Ostenson, Jason; Pujara, Akshat C; Mikheev, Artem; Moy, Linda; Kim, Sungheon G; Melsaether, Amy N; Jhaveri, Komal; Adams, Sylvia; Faul, David; Glielmi, Christopher; Geppert, Christian; Feiweier, Thorsten; Jackson, Kimberly; Cho, Gene Y; Boada, Fernando E; Sigmund, Eric E
PURPOSE: Diffusion-weighted imaging (DWI) and 18 F-fluorodeoxyglucose-positron emission tomography (18 F-FDG-PET) independently correlate with malignancy in breast cancer, but the relationship between their structural and metabolic metrics is not completely understood. This study spatially correlates diffusion, perfusion, and glucose avidity in breast cancer with simultaneous PET/MR imaging and compares correlations with clinical prognostics. METHODS: In this Health Insurance Portability and Accountability Act-compliant prospective study, with written informed consent and approval of the institutional review board and using simultaneously acquired FDG-PET and DWI, tissue diffusion (Dt ), and perfusion fraction (fp ) from intravoxel incoherent motion (IVIM) analysis were registered to FDG-PET within 14 locally advanced breast cancers. Lesions were analyzed using 2D histograms and correlation coefficients between Dt , fp , and standardized uptake value (SUV). Correlations were compared with prognostics from biopsy, metastatic burden from whole-body PET, and treatment history. RESULTS: SUV||Dt correlation coefficient significantly distinguished treated (0.11 +/- 0.24) from nontreated (-0.33 +/- 0.26) patients (P = 0.005). SUV||fp correlations were on average negative for the whole cohort (-0.17 +/- 0.13). CONCLUSION: Simultaneously acquired and registered FDG-PET/DWI allowed quantifiable descriptions of breast cancer microenvironments that may provide a framework for monitoring and predicting response to treatment. Magn Reson Med, 2016. (c) 2016 International Society for Magnetic Resonance in Medicine.
PMCID:5405014
PMID: 27779790
ISSN: 1522-2594
CID: 2288692

Comparison of conventional DCE-MRI and a novel golden-angle radial multicoil compressed sensing method for the evaluation of breast lesion conspicuity

Heacock, Laura; Gao, Yiming; Heller, Samantha L; Melsaether, Amy N; Babb, James S; Block, Tobias K; Otazo, Ricardo; Kim, Sungheon G; Moy, Linda
PURPOSE: To compare a novel multicoil compressed sensing technique with flexible temporal resolution, golden-angle radial sparse parallel (GRASP), to conventional fat-suppressed spoiled three-dimensional (3D) gradient-echo (volumetric interpolated breath-hold examination, VIBE) MRI in evaluating the conspicuity of benign and malignant breast lesions. MATERIALS AND METHODS: Between March and August 2015, 121 women (24-84 years; mean, 49.7 years) with 180 biopsy-proven benign and malignant lesions were imaged consecutively at 3.0 Tesla in a dynamic contrast-enhanced (DCE) MRI exam using sagittal T1-weighted fat-suppressed 3D VIBE in this Health Insurance Portability and Accountability Act-compliant, retrospective study. Subjects underwent MRI-guided breast biopsy (mean, 13 days [1-95 days]) using GRASP DCE-MRI, a fat-suppressed radial "stack-of-stars" 3D FLASH sequence with golden-angle ordering. Three readers independently evaluated breast lesions on both sequences. Statistical analysis included mixed models with generalized estimating equations, kappa-weighted coefficients and Fisher's exact test. RESULTS: All lesions demonstrated good conspicuity on VIBE and GRASP sequences (4.28 +/- 0.81 versus 3.65 +/- 1.22), with no significant difference in lesion detection (P = 0.248). VIBE had slightly higher lesion conspicuity than GRASP for all lesions, with VIBE 12.6% (0.63/5.0) more conspicuous (P < 0.001). Masses and nonmass enhancement (NME) were more conspicuous on VIBE (P < 0.001), with a larger difference for NME (14.2% versus 9.4% more conspicuous). Malignant lesions were more conspicuous than benign lesions (P < 0.001) on both sequences. CONCLUSION: GRASP DCE-MRI, a multicoil compressed sensing technique with high spatial resolution and flexible temporal resolution, has near-comparable performance to conventional VIBE imaging for breast lesion evaluation. LEVEL OF EVIDENCE: 3 J. Magn. Reson. Imaging 2016.
PMCID:5538366
PMID: 27859874
ISSN: 1522-2586
CID: 2311022

Breast PET/MR Imaging

Melsaether, Amy; Moy, Linda
Breast and whole-body PET/MR imaging is being used to detect local and metastatic disease and is being investigated for potential imaging biomarkers, which may eventually help personalize treatments and prognoses. This article provides an overview of breast and whole-body PET/MR exam techniques, summarizes PET and MR breast imaging for lesion detection, outlines investigations into multi-parametric breast PET/MR, looks at breast PET/MR in the setting of neo-adjuvant chemotherapy, and reviews the pros and cons of whole-body PET/MR in the setting of metastatic or suspected metastatic breast cancer.
PMCID:6080619
PMID: 28411681
ISSN: 1557-8275
CID: 2532192

Clinical applicability and relevance of fibroglandular tissue segmentation on routine T1 weighted breast MRI

Pujara, Akshat C; Mikheev, Artem; Rusinek, Henry; Rallapalli, Harikrishna; Walczyk, Jerzy; Gao, Yiming; Chhor, Chloe; Pysarenko, Kristine; Babb, James S; Melsaether, Amy N
PURPOSE: To evaluate clinical applicability of fibroglandular tissue (FGT) segmentation on routine T1 weighted breast MRI and compare FGT quantification with radiologist assessment. METHODS: FGT was segmented on 232 breasts and quantified, and was assessed qualitatively by four breast imagers. RESULTS: FGT segmentation was successful in all 232 breasts. Agreement between radiologists and quantified FGT was moderate to substantial (kappa=0.52-0.67); lower quantified FGT was associated with disagreement between radiologists and quantified FGT (P
PMID: 27951458
ISSN: 1873-4499
CID: 2363342

Background parenchymal enhancement over exam time in patients with and without breast cancer

Melsaether, Amy; Pujara, Akshat C; Elias, Kristin; Pysarenko, Kristine; Gudi, Anjali; Dodelzon, Katerina; Babb, James S; Gao, Yiming; Moy, Linda
PURPOSE: To compare background parenchymal enhancement (BPE) over time in patients with and without breast cancer. MATERIALS AND METHODS: This retrospective Institutional Review Board (IRB)-approved, Health Insurance Portability and Accountability Act (HIPAA)-compliant study included 116 women (25-84 years, mean 54 years) with breast cancer who underwent breast magnetic resonance imaging at 3T between 1/2/2009 and 12/29/2009 and 116 age and date-of-exam-matched women without breast cancer (23-84 years, mean 51 years). Two independent, blinded readers (R1, R2) recorded BPE (minimal, mild, moderate, marked) at three times (100, 210, and 320 seconds postcontrast). Subsequent cancers were diagnosed in 9/96 control patients with follow up (12.6-93.0 months, mean 63.6 months). Exact Mann-Whitney, Fisher's exact, and McNemar tests were performed. RESULTS: Mean BPE was not found to be different between patients with and without breast cancer at any time (P = 0.36-0.64). At time 2 as compared with time 1, there were significantly more patients, both with and without breast cancer, with BPE >minimal (R1: 90 vs. 41 [P < 0.001] and 81 vs. 36 [P < 0.001]; R2: 84 vs. 52 [P < 0.001] and 79 vs. 43 [P < 0.001]) and BPE >mild (R1: 59 vs. 10 [P < 0.001] and 47 vs. 13 [P < 0.001]; R2: 49 vs. 12 [P < 0.001] and 41 vs. 18 [P < 0.001]). BPE changes between times 2 and 3 were not significant (P = 0.083-1.0). Odds ratios for control patients developing breast cancer were significant only for R2 and ranged up to 7.67 (1.49, 39.5; P < 0.01) for BPE >mild at time 2. CONCLUSION: BPE changes between the first and second postcontrast scans and stabilizes thereafter in most patients. Further investigation into the most clinically relevant timepoint for BPE assessment is warranted. J. Magn. Reson. Imaging 2016.
PMID: 27285396
ISSN: 1522-2586
CID: 2136622

Radiologic-Pathologic Discordance and Outcome After MRI-Guided Vacuum-Assisted Biopsy

Lewin, Alana A; Heller, Samantha L; Jaglan, Sonam; Elias, Kristin; Newburg, Adrienne; Melsaether, Amy; Moy, Linda
OBJECTIVE: The purpose of this study was to determine the rate, characteristics, and outcomes of discordant MRI-guided vacuum-assisted biopsy (VAB) in women with suspected breast cancer. MATERIALS AND METHODS: This retrospective study reviewed 1314 MRI-guided VABs performed in 1211 women between 2007 and 2013 and yielded 25 discordant results in 24 women. MRI characteristics; BI-RADS assessments; whether the lesion was missed, partially sampled, or excised at biopsy; and biopsy and surgical pathology results were reviewed. Statistical analyses were performed using Fisher exact and Mann-Whitney U tests. RESULTS: Among 1314 lesions that underwent MRI-guided VAB, 25 results were discordant (1.9%; 95% CI, 1.2-2.8%), and nine lesions with discordant results (36.0%, 95% CI, 18.5-56.9%) were malignant at surgical excision (three invasive ductal carcinoma and six ductal carcinoma in situ). There was no significant association between malignancy and lesion type, size, enhancement pattern, BI-RADS assessment, or clinical indication. Forty-four percent (11/25) of discordant lesions were missed, 48.0% (12/25) were partially sampled, and 8.0% (2/25) appeared to have been excised. Of the nine malignant lesions, 44.4% (4/9) discordant malignant lesions were missed, 44.4% (4/9) were partially sampled, and 11.1% (1/9) appeared to have been excised. Lesion sizes and types were similar in the missed and partially excised groups. CONCLUSION: The potential for false-negative results at MRI-guided VAB underscores the importance of radiologic-histologic correlation and imaging review after biopsy. Rebiopsy or excision in discordant cases is therefore recommended.
PMID: 27786559
ISSN: 1546-3141
CID: 2288802

Post-operative findings/recurrent disease

Chapter by: Melsaether, A; Gao, Y
in: Breast Oncology: Techniques, Indications, and Interpretation by
pp. 163-178
ISBN: 9783319425634
CID: 2625972

Comparison of Whole-Body F FDG PET/MR Imaging and Whole-Body F FDG PET/CT in Terms of Lesion Detection and Radiation Dose in Patients with Breast Cancer

Melsaether, Amy N; Raad, Roy A; Pujara, Akshat C; Ponzo, Fabio D; Pysarenko, Kristine M; Jhaveri, Komal; Babb, James S; Sigmund, Eric E; Kim, Sungheon G; Moy, Linda A
Purpose To compare fluorine 18 (18F) fluorodeoxyglucose (FDG) combined positron emission tomography (PET) and magnetic resonance (MR) imaging with 18F FDG combined PET and computed tomography (CT) in terms of organ-specific metastatic lesion detection and radiation dose in patients with breast cancer. Materials and Methods From July 2012 to October 2013, this institutional review board-approved HIPAA-compliant prospective study included 51 patients with breast cancer (50 women; mean age, 56 years; range, 32-76 years; one man; aged 70 years) who completed PET/MR imaging with diffusion-weighted and contrast material-enhanced sequences after unenhanced PET/CT. Written informed consent for study participation was obtained. Two independent readers for each modality recorded site and number of lesions. Imaging and clinical follow-up, with consensus in two cases, served as the reference standard. Results There were 242 distant metastatic lesions in 30 patients, 18 breast cancers in 17 patients, and 19 positive axillary nodes in eight patients. On a per-patient basis, PET/MR imaging with diffusion-weighted and contrast-enhanced sequences depicted distant (30 of 30 [100%] for readers 1 and 2) and axillary (eight of eight [100%] for reader 1, seven of eight [88%] for reader 2) metastatic disease at rates similar to those of unenhanced PET/CT (distant metastatic disease: 28 of 29 [96%] for readers 3 and 4, P = .50; axillary metastatic disease: seven of eight [88%] for readers 3 and 4, P > .99) and outperformed PET/CT in the detection of breast cancer (17 of 17 [100%] for readers 1 and 2 vs 11 of 17 [65%] for reader 3 and 10 of 17 [59%] for reader 4; P < .001). PET/MR imaging showed increased sensitivity for liver (40 of 40 [100%] for reader 1 and 32 of 40 [80%] for reader 2 vs 30 of 40 [75%] for reader 3 and 28 of 40 [70%] for reader 4; P < .001) and bone (105 of 107 [98%] for reader 1 and 102 of 107 [95%] for reader 2 vs 106 of 107 [99%] for reader 3 and 93 of 107 [87%] for reader 4; P = .012) metastases and revealed brain metastases in five of 51 (10%) patients. PET/CT trended toward increased sensitivity for lung metastases (20 of 23 [87%] for reader 1 and 17 of 23 [74%] for reader 2 vs 23 of 23 [100%] for reader 3 and 22 of 23 [96%] for reader 4; P = .065). Dose reduction averaged 50% (P < .001). Conclusion In patients with breast cancer, PET/MR imaging may yield better sensitivity for liver and possibly bone metastases but not for pulmonary metastases, as compared with that attained with PET/CT, at about half the radiation dose. (c) RSNA, 2016 Online supplemental material is available for this article.
PMCID:5028256
PMID: 27023002
ISSN: 1527-1315
CID: 2059122

Outcomes of Preoperative MRI-Guided Needle Localization of Nonpalpable Mammographically Occult Breast Lesions

Gao, Yiming; Bagadiya, Neeti R; Jardon, Meghan L; Heller, Samantha L; Melsaether, Amy N; Toth, Hildegard B; Moy, Linda
OBJECTIVE: MRI-guided needle localization allows access to MRI-detected mammographically occult breast lesions that are not amenable to MRI-guided biopsy. The purpose of this study was to examine the safety and outcomes of MRI-guided needle localization. MATERIALS AND METHODS: Ninety-nine consecutive breast lesions that underwent preoperative MRI-guided needle localization were identified. Clinical indications for breast MRI, reasons for performing MRI-guided needle localization, and surgical pathology results were recorded. Lesion characteristics, procedure time, and complications were assessed. RESULTS: Of 99 lesions, 60 (60.6%) were in a location inaccessible for MRI biopsy, necessitating MRI-guided needle localization. Histologic evaluation revealed 38 (38.4%) carcinomas, 31 (31.3%) high-risk lesions, and 30 (30.3%) benign lesions. Carcinoma was more likely to be found in women with known cancer (31/61 [50.8%]; p = 0.003) than in women undergoing imaging for high-risk screening (2/18 [11.1%]) or problem solving (6/20 [30%]). Masses (p = 0.013) and foci (p < 0.001) were more likely to be malignant than were lesions with nonmass enhancement. Foci were significantly more often malignant compared with all other lesion types (9/10 [90%]; p < 0.001). The mean (+/- SD) procedure time was 32.9 +/- 9.39 minutes. All lesions were occult on specimen radiographs. There were no procedure-related complications. CONCLUSION: The positive predictive value of MRI-guided needle localization (38.4%) is comparable to that of mammography- and tomosynthesis-guided localizations and is highest in women with a known diagnosis of cancer. It is highly accurate in targeting small enhancing lesions, thereby improving surgical management. MRI-guided needle localization is a safe, accurate, and time-efficient procedure.
PMID: 27275652
ISSN: 1546-3141
CID: 2136442