Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease
Alperovitch, Annick; Boland, Anne; Delepoine, Marc; Dubois, Bruno; Duron, Emmanuelle; Epelbaum, Jacques; Van Cauwenberghe, Caroline; Engelborghs, Sebastiaan; Vandenberghe, Rik; De Deyn, Peter P; Ferri, Raffaele; Romano, Camelo; Caltagirone, Carlo; Orfei, Maria Donata; Ciaramella, Antonio; Scarpini, Elio; Fenoglio, Chiara; Siciliano, Gabriele; Bonuccelli, Ubaldo; Bagnoli, Silvia; Bracco, Laura; Bessi, Valentina; Cecchetti, Roberta; Bastiani, Patrizia; Squassina, Alessio; Seripa, Davide; Frank-Garcia, Ana; Sastre, Isabel; Blesa, Rafael; Alcolea, Daniel; Suarez-Clavet, Marc; Sanchez-Juan, Pascual; Munoz Fernandez, Carmen; Aladro Benito, Yolanda; Thonberg, Hakan; Forshell, Charlotte; Lilius, Lena; Kinhult-Stahlbom, Anne; Giedraitis, Vilmantas; Kilander, Lena; Brundin, Rose Marie; Concari, Letizia; Helisalmi, Seppo; Koivisto, Anne Maria; Haapasalo, Annakaisa; Solfrizzi, Vincenzo; Frisardi, Vincenza; Ott, Jurg; Carney, Regina M; Mash, Deborah C; Albert, Marilyn S; Albin, Roger L; Apostolova, Liana G; Arnold, Steven E; Barmada, Michael M; Barnes, Lisa L; Beach, Thomas G; Bigio, Eileen H; Bird, Thomas D; Boeve, Bradley F; Bowen, James D; Boxer, Adam; Burk, James R; Cairns, Nigel J; Cao, Chuanhai; Carlson, Chris S; Carroll, Steven L; Chibnik, Lori B; Chui, Helena C; Clark, David G; Corneveaux, Jason; Cribbs, David G; DeCarli, Charles; DeKosky, Steven T; Demirci, F Yesim; Dick, Malcolm; Dickson, Dennis W; Duara, Ranjan; Ertekin-Taner, Nilufer; Fallon, Kenneth B; Farlow, Martin R; Ferris, Steven; Frosch, Matthew P; Galasko, Douglas R; Ganguli, Mary; Gearing, Marla; Geschwind, Daniel H; Ghetti, Bernardino; Gilman, Sid; Glass, Jonathan D; Growdon, John H; Hamilton, Ronald L; Harrell, Lindy E; Head, Elizabeth; Honig, Lawrence S; Hulette, Christine M; Hyman, Bradley T; Jarvik, Gail P; Jicha, Gregory A; Jin, Lee-Way; Karydas, Anna; Kauwe, John S K; Kaye, Jeffrey A; Kim, Ronald; Koo, Edward H; Kowall, Neil W; Kramer, Joel H; Kramer, Patricia; LaFerla, Frank M; Lah, James J; Levernez, James B; Levey, Allan I; Li, Ge; Lieberman, Andrew P; Lyketsos, Constantine G; Mack, Wendy J; Marson, Daniel C; Martiniuk, Frank; Masliah, Eliezer; McCormick, Wayne C; McCurry, Susan M; McDavid, Andrew N; McKee, Ann C; Mesulam, Marsel; Miller, Bruce L; Miller, Carol A; Miller, Joshua W; Morris, John C; Murrell, Jill R; Olichney, John M; Pankratz, Vernon S; Parasi, Joseph E; Peskind, Elaine; Peterson, Ronald C; Pierce, Aimee; Poon, Wayne W; Potter, Huntington; Quinn, Joseph F; Raj, Ashok; Raskind, Murray; Reiman, Eric M; Reisberg, Barry; Ringman, John M; Roberson, Erik D; Rosen, Howard J; Rosenberg, Roger N; Sano, Mary; Saykin, Andrew J; Schneider, Julie A; Schneider, Lon S; Seeley, William W; Smith, Amanda G; Sonnen, Joshua A; Spina, Salvatore; Stern, Robert A; Tanzi, Rudolph E; Trojanowski, John Q; Troncoso, Juan C; Van Deerlin, Vivianna M; Van Eldik, Linda J; Vinters, Harry V; Vonsattel, Jean Paul; Weintraub, Sandra; Welsh-Bohmer, Kathleen A; Williamson, Jennifer; Woltjer, Randall L; Yu, Chang-En; Barber, Robert; Au, Rhoda; Wolf, Philip A; Beiser, Alexa; Debette, Stephanie; Yang, Qiong; Weinstein, Galit; Johnson, Andrew D; Wang, Jing; Uitterlinden, Andre G; Rivadeneira, Fernando; Koudstgaal, Peter J; Longstreth, William T Jr; Becker, James T; Kuller, Lewis H; Lumley, Thomas; Rice, Kenneth; Garcia, Melissa; Aspelund, Thor; Marksteiner, Josef J M; Dal-Bianco, Peter; Toglhofer, Anna Maria; Freudenberger, Paul; Ransmayr, Gerhard; Benke, Thomas; Toeglhofer, Anna M; Bressler, Jan; Breteler, Monique M B; Fornage, Myriam; Hernandez, Isabel; Rosende Roca, Maitee; Ana Mauleon, Maitee; Alegrat, Montserrat; Ramirez-Lorca, Reposo; Gonzalez-Perez, Antonio; Chapman, Jade; Stretton, Alexandra; Morgan, Angharad; Kehoe, Patrick G; Medway, Christopher; Lord, Jenny; Turton, James; Hooper, Nigel M; Vardy, Emma; Warren, Jason D; Schott, Jonathan M; Uphill, James; Ryan, Natalie; Rossor, Martin; Ben-Shlomo, Yoav; Makrina, Daniilidou; Gkatzima, Olymbia; Lupton, Michelle; Koutroumani, Maria; Avramidou, Despoina; Germanou, Antonia; Jessen, Frank; Riedel-Heller, Steff; Dichgans, Martin; Heun, Reiner; Kolsch, Heike; Schurmann, Britta; Herold, Christine; Lacour, Andre; Drichel, Dmitriy; Hoffman, Per; Kornhuber, Johannes; Gu, Wei; Feulner, Thomas; van den Bussche, Hendrik; Lawlor, Brian; Lynch, Aoibhinn; Mann, David; Smith, A David; Warden, Donald; Wilcock, Gordon; Heuser, Isabella; Wiltgang, Jens; Frolich, Lutz; Hull, Michael; Mayo, Kevin; Livingston, Gill; Bass, Nicholas J; Gurling, Hugh; McQuillin, Andrew; Gwilliam, Rhian; Deloukas, Panagiotis; Al-Chalabi, Ammar; Shaw, Christoher E; Singleton, Andrew B; Guerreiro, Rita; Jockel, Karl-Heinz; Klopp, Norman; Wichmann, H-Erich; Dickson, Dennis W; Graff-Radford, Neill R; Ma, Li; Bisceglio, Gina; Fisher, Elizabeth; Warner, Nick; Pickering-Brown, Stuart
Eleven susceptibility loci for late-onset Alzheimer's disease (LOAD) were identified by previous studies; however, a large portion of the genetic risk for this disease remains unexplained. We conducted a large, two-stage meta-analysis of genome-wide association studies (GWAS) in individuals of European ancestry. In stage 1, we used genotyped and imputed data (7,055,881 SNPs) to perform meta-analysis on 4 previously published GWAS data sets consisting of 17,008 Alzheimer's disease cases and 37,154 controls. In stage 2, 11,632 SNPs were genotyped and tested for association in an independent set of 8,572 Alzheimer's disease cases and 11,312 controls. In addition to the APOE locus (encoding apolipoprotein E), 19 loci reached genome-wide significance (P < 5 x 10(-8)) in the combined stage 1 and stage 2 analysis, of which 11 are newly associated with Alzheimer's disease.
PMCID:3896259
PMID: 24162737
ISSN: 1061-4036
CID: 948132
Variants in the ATP-binding cassette transporter (ABCA7), apolipoprotein E 4,and the risk of late-onset Alzheimer disease in African Americans
Reitz, Christiane; Jun, Gyungah; Naj, Adam; Rajbhandary, Ruchita; Vardarajan, Badri Narayan; Wang, Li-San; Valladares, Otto; Lin, Chiao-Feng; Larson, Eric B; Graff-Radford, Neill R; Evans, Denis; De Jager, Philip L; Crane, Paul K; Buxbaum, Joseph D; Murrell, Jill R; Raj, Towfique; Ertekin-Taner, Nilufer; Logue, Mark; Baldwin, Clinton T; Green, Robert C; Barnes, Lisa L; Cantwell, Laura B; Fallin, M Daniele; Go, Rodney C P; Griffith, Patrick; Obisesan, Thomas O; Manly, Jennifer J; Lunetta, Kathryn L; Kamboh, M Ilyas; Lopez, Oscar L; Bennett, David A; Hendrie, Hugh; Hall, Kathleen S; Goate, Alison M; Byrd, Goldie S; Kukull, Walter A; Foroud, Tatiana M; Haines, Jonathan L; Farrer, Lindsay A; Pericak-Vance, Margaret A; Schellenberg, Gerard D; Mayeux, Richard; Ferris, Steven; Reisberg, Barry; Martiniuk, Frank
IMPORTANCE: Genetic variants associated with susceptibility to late-onset Alzheimer disease are known for individuals of European ancestry, but whether the same or different variants account for the genetic risk of Alzheimer disease in African American individuals is unknown. Identification of disease-associated variants helps identify targets for genetic testing, prevention, and treatment. OBJECTIVE: To identify genetic loci associated with late-onset Alzheimer disease in African Americans. DESIGN, SETTING, AND PARTICIPANTS: The Alzheimer Disease Genetics Consortium (ADGC) assembled multiple data sets representing a total of 5896 African Americans (1968 case participants, 3928 control participants) 60 years or older that were collected between 1989 and 2011 at multiple sites. The association of Alzheimer disease with genotyped and imputed single-nucleotide polymorphisms (SNPs) was assessed in case-control and in family-based data sets. Results from individual data sets were combined to perform an inverse variance-weighted meta-analysis, first with genome-wide analyses and subsequently with gene-based tests for previously reported loci. MAIN OUTCOMES AND MEASURES: Presence of Alzheimer disease according to standardized criteria. RESULTS: Genome-wide significance in fully adjusted models (sex, age, APOE genotype, population stratification) was observed for a SNP in ABCA7 (rs115550680, allele = G; frequency, 0.09 cases and 0.06 controls; odds ratio [OR], 1.79 [95% CI, 1.47-2.12]; P = 2.2 x 10(-9)), which is in linkage disequilibrium with SNPs previously associated with Alzheimer disease in Europeans (0.8 < D' < 0.9). The effect size for the SNP in ABCA7 was comparable with that of the APOE 4-determining SNP rs429358 (allele = C; frequency, 0.30 cases and 0.18 controls; OR, 2.31 [95% CI, 2.19-2.42]; P = 5.5 x 10(-47)). Several loci previously associated with Alzheimer disease but not reaching significance in genome-wide analyses were replicated in gene-based analyses accounting for linkage disequilibrium between markers and correcting for number of tests performed per gene (CR1, BIN1, EPHA1, CD33; 0.0005 < empirical P < .001). CONCLUSIONS AND RELEVANCE: In this meta-analysis of data from African American participants, Alzheimer disease was significantly associated with variants in ABCA7 and with other genes that have been associated with Alzheimer disease in individuals of European ancestry. Replication and functional validation of this finding is needed before this information is used in clinical settings.
PMCID:3667653
PMID: 23571587
ISSN: 0098-7484
CID: 627152