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Lung Allograft Dysbiosis Associates with Immune Response and Primary Graft Dysfunction
Nelson, Nathaniel C; Wong, Kendrew K; Mahoney, Ian J; Malik, Tahir; Rudym, Darya; Lesko, Melissa B; Qayum, Seema; Lewis, Tyler C; Chang, Stephanie H; Chan, Justin C Y; Geraci, Travis C; Li, Yonghua; Pamar, Prerna; Schnier, Joseph; Singh, Rajbir; Collazo, Destiny; Chang, Miao; Kyeremateng, Yaa; McCormick, Colin; Borghi, Sara; Patel, Shrey; Darawshi, Fares; Barnett, Clea R; Sulaiman, Imran; Kugler, Matthias C; Brosnahan, Shari B; Singh, Shivani; Tsay, Jun-Chieh J; Wu, Benjamin G; Pass, Harvey I; Angel, Luis F; Segal, Leopoldo N; Natalini, Jake G
RATIONALE/BACKGROUND:Lower airway enrichment with oral commensals has been previously associated with grade 3 severe primary graft dysfunction (PGD) after lung transplantation (LT). We aimed to determine whether this dysbiotic signature is present across all PGD severity grades, including milder forms, and whether it is associated with a distinct host inflammatory endotype. METHODS:Lower airway samples from 96 LT recipients with varying degrees of PGD were used to evaluate the lung allograft microbiota via 16S rRNA gene sequencing. Bronchoalveolar lavage (BAL) cytokine concentrations and cell differential percentages were compared across PGD grades. In a subset of samples, we evaluated the lower airway host transcriptome using RNA sequencing methods. RESULTS:Differential analyses demonstrated lower airway enrichment with supraglottic-predominant taxa (SPT) in both moderate and severe PGD. Dirichlet Multinomial Mixtures (DMM) modeling identified two distinct microbial clusters. A greater percentage of subjects with moderate-severe PGD were identified within the dysbiotic cluster (C-SPT) than within the no PGD group (48 and 29%, respectively) though this difference did not reach statistical significance (p=0.06). PGD severity associated with increased BAL neutrophil concentration (p=0.03) and correlated with BAL concentrations of MCP-1/CCL2, IP-10/CXCL10, IL-10, and TNF-α (p<0.05). Furthermore, microbial signatures of dysbiosis correlated with neutrophils, MCP-1/CCL-2, IL-10, and TNF-α (p<0.05). C-SPT exhibited differential expression of TNF, SERPINE1 (PAI-1), MPO, and MMP1 genes and upregulation of MAPK pathways, suggesting that dysbiosis regulates host signaling to promote neutrophilic inflammation. CONCLUSIONS:Lower airway dysbiosis within the lung allograft is associated with a neutrophilic inflammatory endotype, an immune profile commonly recognized as the hallmark for PGD pathogenesis. This data highlights a putative role for lower airway microbial dysbiosis in the pathogenesis of this syndrome.
PMID: 39561864
ISSN: 1557-3117
CID: 5758452
Longitudinal Lower Airway Microbial Signatures of Acute Cellular Rejection in Lung Transplantation
Natalini, Jake G; Wong, Kendrew K; Nelson, Nathaniel C; Wu, Benjamin G; Rudym, Darya; Lesko, Melissa B; Qayum, Seema; Lewis, Tyler C; Wong, Adrian; Chang, Stephanie H; Chan, Justin C Y; Geraci, Travis C; Li, Yonghua; Wang, Chan; Li, Huilin; Pamar, Prerna; Schnier, Joseph; Mahoney, Ian J; Malik, Tahir; Darawshy, Fares; Sulaiman, Imran; Kugler, Matthias C; Singh, Rajbir; Collazo, Destiny E; Chang, Miao; Patel, Shrey; Kyeremateng, Yaa; McCormick, Colin; Barnett, Clea R; Tsay, Jun-Chieh J; Brosnahan, Shari B; Singh, Shivani; Pass, Harvey I; Angel, Luis F; Segal, Leopoldo N
PMID: 38358857
ISSN: 1535-4970
CID: 5633542
Reply to: Candidacy for Extracorporeal Membrane Oxygenation Should Start with Ventilatory Support Optimization [Letter]
Rudym, Darya; Pham, TÃ i; Rackley, Craig R; Grasselli, Giacomo; Schmidt, Matthieu; Brodie, Daniel
PMCID:10806422
PMID: 37972376
ISSN: 1535-4970
CID: 5626482
Mortality in Patients with Obesity and Acute Respiratory Distress Syndrome Receiving Extracorporeal Membrane Oxygenation: The Multicenter ECMObesity Study
Rudym, Darya; Pham, TÃ i; Rackley, Craig R; Grasselli, Giacomo; Anderson, Michaela; Baldwin, Matthew R; Beitler, Jeremy; Agerstrand, Cara; Serra, Alexis; Winston, Lisle A; Bonadonna, Desiree; Yip, Natalie; Emerson, Logan J; Dzierba, Amy; Sonett, Joshua; Abrams, Darryl; Ferguson, Niall D; Bacchetta, Matthew; Schmidt, Matthieu; Brodie, Daniel; ,
PMID: 37638735
ISSN: 1535-4970
CID: 5618532
Lower Airway Microbial Signatures Associated With Acute Cellular Rejection in Lung Transplantation
Nelson, N.; Wong, K.; Malik, T.; Rudym, D.; Lesko, M.; Chang, S.H.; Li, Y.; Singh, R.; Collazo, D.E.; Chang, M.; Kyeremateng, Y.; McCormick, C.; Barnett, C.R.; Wu, B.G.; Tsay, J.-C.J.; Brosnahan, S.B.; Singh, S.; Angel, L.F.; Segal, L.; Natalini, J.G.
ORIGINAL:0017184
ISSN: 1535-4970
CID: 5651652
Listing Dilemmas: Age, Frailty, Weight, Preexisting Cancers, and Systemic Diseases
Rudym, Darya; Natalini, Jake G; Trindade, Anil J
Selection of lung transplant candidates is an evolving field that pushes the boundaries of what is considered the norm. Given the continually changing demographics of the typical lung transplant recipient as well as the growing list of risk factors that predispose patients to poor posttransplant outcomes, we explore the dilemmas in lung transplant candidate selections pertaining to older age, frailty, low and high body mass index, preexisting cancers, and systemic autoimmune rheumatic diseases.
PMID: 36774166
ISSN: 1557-8216
CID: 5418002
Characteristics and Outcomes of Patients With COVID-19-Associated ARDS Who Underwent Lung Transplant [Comment]
Rudym, Darya; Chang, Stephanie H; Angel, Luis F
PMID: 35763004
ISSN: 1538-3598
CID: 5281092
One-year immunologic outcomes of lung transplantation utilizing hepatitis C-viremic donors
Lewis, Tyler C; Lesko, Melissa; Rudym, Darya; Lonze, Bonnie E; Mangiola, Massimo; Natalini, Jake G; Chan, Justin C Y; Chang, Stephanie H; Angel, Luis F
Little is known about the effects of hepatitis C viremia on immunologic outcomes in the era of direct-acting antivirals. We conducted a prospective, single-arm trial of lung transplantation from hepatitis C-infected donors into hepatitis C-naïve recipients (n = 21). Recipients were initiated on glecaprevir-pibrentasvir immediately post-transplant and were continued on therapy for a total of 8 weeks. A control group of recipients of hepatitis C-negative lungs were matched 1:1 on baseline variables (n = 21). The primary outcome was the frequency of acute cellular rejection over 1-year post-transplant. Treatment with glecaprevir-pibrentasvir was well tolerated and resulted in viremia clearance after a median of 16 days of therapy (IQR 10-24 days). At one year, there was no difference in incidence of acute cellular rejection (71.4% vs. 85.7%, P = .17) or rejection requiring treatment (33.3% vs. 57.1%, P = .12). Mean cumulative acute rejection scores were similar between groups (.46 [SD ± .53] vs. .52 [SD ± .37], P = .67). Receipt of HCV+ organs was not associated with acute rejection on unadjusted Cox regression analysis (HR .55, 95% CI .28-1.11, P = .09), or when adjusted for risk factors known to be associated with acute rejection (HR .57, 95% CI .27-1.21, P = .14). Utilization of hepatitis C infected lungs with immediate treatment leads to equivalent immunologic outcomes at 1 year.
PMID: 35689815
ISSN: 1399-0012
CID: 5248602
Pulmonary Pathology of End-Stage COVID-19 Disease in Explanted Lungs and Outcomes After Lung Transplantation
Flaifel, Abdallah; Kwok, Benjamin; Ko, Jane; Chang, Stephanie; Smith, Deane; Zhou, Fang; Chiriboga, Luis A; Zeck, Briana; Theise, Neil; Rudym, Darya; Lesko, Melissa; Angel, Luis; Moreira, Andre; Narula, Navneet
OBJECTIVES/OBJECTIVE:Patients with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection may develop end-stage lung disease requiring lung transplantation. We report the clinical course, pulmonary pathology with radiographic correlation, and outcomes after lung transplantation in three patients who developed chronic respiratory failure due to postacute sequelae of SARS-CoV-2 infection. METHODS:A retrospective histologic evaluation of explanted lungs due to coronavirus disease 2019 was performed. RESULTS:None of the patients had known prior pulmonary disease. The major pathologic findings in the lung explants were proliferative and fibrotic phases of diffuse alveolar damage, interstitial capillary neoangiogenesis, and mononuclear inflammation, specifically macrophages, with varying numbers of T and B lymphocytes. The fibrosis varied from early collagen deposition to more pronounced interstitial collagen deposition; however, pulmonary remodeling with honeycomb change was not present. Other findings included peribronchiolar metaplasia, microvascular thrombosis, recanalized thrombi in muscular arteries, and pleural adhesions. No patients had either recurrence of SARS-CoV-2 infection or allograft rejection following transplant at this time. CONCLUSIONS:The major pathologic findings in the lung explants of patients with SARS-CoV-2 infection suggest ongoing fibrosis, prominent macrophage infiltration, neoangiogenesis, and microvascular thrombosis. Characterization of pathologic findings could help develop novel management strategies.
PMCID:8755396
PMID: 34999755
ISSN: 1943-7722
CID: 5118212
Upper gastrointestinal bleeding in a lung transplant recipient
Sivasailam, Barathi; Rudym, Darya; Latorre, Melissa; Mehta, Sapna A
PMID: 35373524
ISSN: 1600-6143
CID: 5201562