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Flaifel, Abdallah; Melamed, Jonathan; Deng, Fang-Ming
PMID: 33788912
ISSN: 1543-2165
CID: 4933862
Testicular Changes Associated With Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) [Letter]
Flaifel, Abdallah; Guzzetta, Melissa; Occidental, Michael; Najari, Bobby B; Melamed, Jonathan; Thomas, Kristen M; Deng, Fang-Ming
PMID: 33367666
ISSN: 1543-2165
CID: 4731502
Investigating the Spectrum of Dermatologic Manifestations in COVID-19 Infection in Severely Ill Patients - A Series of Four Cases [Case Report]
Occidental, Michael; Flaifel, Abdallah; Lin, Lawrence H; Guzzetta, Melissa; Thomas, Kristen; Jour, George
PMID: 32896915
ISSN: 1600-0560
CID: 4588872
Single-cell RNA sequencing reveals compromised immune microenvironment in precursor stages of multiple myeloma
Zavidij, Oksana; Haradhvala, Nicholas J; Mouhieddine, Tarek H; Sklavenitis-Pistofidis, Romanos; Cai, Songjie; Reidy, Mairead; Rahmat, Mahshid; Flaifel, Abdallah; Ferland, Benjamin; Su, Nang K; Agius, Michael P; Park, Jihye; Manier, Salomon; Bustoros, Mark; Huynh, Daisy; Capelletti, Marzia; Berrios, Brianna; Liu, Chia-Jen; He, Meng Xiao; Braggio, Esteban; Fonseca, Rafael; Maruvka, Yosef E; Guerriero, Jennifer L; Goldman, Melissa; Van Allen, Eliezer M; McCarroll, Steven A; Azzi, Jamil; Getz, Gad; Ghobrial, Irene M
Precursor states of Multiple Myeloma (MM) and its native tumor microenvironment need in-depth molecular characterization to better stratify and treat patients at risk. Using single-cell RNA sequencing of bone marrow cells from precursor stages, MGUS and smoldering myeloma (SMM), to full-blown MM alongside healthy donors, we demonstrate early immune changes during patient progression. We find NK cell abundance is frequently increased in early stages, and associated with altered chemokine receptor expression. As early as SMM, we show loss of GrK+ memory cytotoxic T-cells, and show their critical role in MM immunosurveillance in mouse models. Finally, we report MHC class II dysregulation in CD14+ monocytes, which results in T cell suppression in vitro. These results provide a comprehensive map of immune changes at play over the evolution of pre-malignant MM, which will help develop strategies for immune-based patient stratification.
PMID: 33409501
ISSN: 2662-1347
CID: 5924882
Characteristics of Breast Cancer Metastasizing to Bone in a Mediterranean Population
Bannoura, Sami; Nahouli, Hasan; Noubani, Aya; Flaifel, Abdallah; Khalifeh, Ibrahim
AIM/OBJECTIVE:This study examines clinicopathological, molecular, and radiological characteristics of breast cancer metastasizing to the bone in a Mediterranean population. METHODS:Cases of breast cancer with metastasis to bone were retrieved from the pathology department archives. Descriptive statistics and bivariate inferential statistics of retrieved clinical (demographic, focality, laterality, axillary lymph node status, and metastasis-free interval), radiological (skeletal site of bone metastasis, type of bone lesion), and microscopic (grade, subtype of breast cancer, lymphovascular status, perineural status, lymph node involvement, nodal extracapsular extension, molecular subtype) data were conducted. RESULTS:Out of 123 cases analyzed, 93.5% were ductal, 90% had axillary lymph node metastasis, 60.5% were luminal A, 59.6% were osteolytic, and 54.4% had grade III. Discordance in the status of ER, PR, and HER2 between the primary breast tumor and the corresponding bone metastases was noted, with the highest rate of change reported for PR (35.7%). Significance was detected at the level of difference between the subtype of breast cancer with regards to the radiologic features where the ductal subtype was found to be mostly osteolytic while the lobular subtype was mostly either osteoblastic or mixed (p-value=0.05). The metastasis-free interval was significantly associated with the number of metastatic bone lesions (P=0.001). CONCLUSION/CONCLUSIONS:The significant association between metastasis-free interval and the number of metastatic bone lesions suggests that a higher interval allows more time for tumors to manifest multiple lesions. The high rate of discordance in the status of PR, ER, and HER2 was congruent with the literature highlighting the need to further investigate underlying mechanisms.
PMCID:7769727
PMID: 33391916
ISSN: 2168-8184
CID: 5924872
Prognostic significance and immune correlates of CD73 expression in renal cell carcinoma
Tripathi, Abhishek; Lin, Edwin; Xie, Wanling; Flaifel, Abdallah; Steinharter, John A; Stern Gatof, Emily N; Bouchard, Gabrielle; Fleischer, Justin H; Martinez-Chanza, Nieves; Gray, Connor; Mantia, Charlene; Thompson, Linda; Wei, Xiao X; Giannakis, Marios; McGregor, Bradley A; Choueiri, Toni K; Agarwal, Neeraj; McDermott, David F; Signoretti, Sabina; Harshman, Lauren C
BACKGROUND:) transcript levels with markers of angiogenesis and antitumor immune response. METHODS:expression groups. RESULTS:expression was associated with increased Treg and angiogenesis signatures. CONCLUSIONS:High CD73 expression portends significantly worse survival outcomes independent of stage and grade. Our findings provide compelling support for targeting the immunosuppressive and proangiogenic CD73-adenosine pathway in RCC.
PMCID:7661372
PMID: 33177176
ISSN: 2051-1426
CID: 5924812
Mammalian SWI/SNF Complex Genomic Alterations and Immune Checkpoint Blockade in Solid Tumors
Abou Alaiwi, Sarah; Nassar, Amin H; Xie, Wanling; Bakouny, Ziad; Berchuck, Jacob E; Braun, David A; Baca, Sylvan C; Nuzzo, Pier Vitale; Flippot, Ronan; Mouhieddine, Tarek H; Spurr, Liam F; Li, Yvonne Y; Li, Taiwen; Flaifel, Abdallah; Steinharter, John A; Margolis, Claire A; Vokes, Natalie I; Du, Heng; Shukla, Sachet A; Cherniack, Andrew D; Sonpavde, Guru; Haddad, Robert I; Awad, Mark M; Giannakis, Marios; Hodi, F Stephen; Liu, X Shirley; Signoretti, Sabina; Kadoch, Cigall; Freedman, Matthew L; Kwiatkowski, David J; Van Allen, Eliezer M; Choueiri, Toni K
Prior data have variably implicated the inactivation of the mammalian SWItch/Sucrose Non-Fermentable (mSWI/SNF) complex with increased tumor sensitivity to immune checkpoint inhibitors (ICI). Herein, we examined the association between mSWI/SNF variants and clinical outcomes to ICIs. We correlated somatic loss-of-function (LOF) variants in a predefined set of mSWI/SNF genes (ARID1A, ARID1B, SMARCA4, SMARCB1, PBRM1, and ARID2) with clinical outcomes in patients with cancer treated with systemic ICIs. We identified 676 patients from Dana-Farber Cancer Institute (DFCI, Boston, MA) and 848 patients from a publicly available database from Memorial Sloan Kettering Cancer Center (MSKCC, New York, NY) who met the inclusion criteria. Multivariable analyses were conducted and adjusted for available baseline factors and tumor mutational burden. Median follow-up was 19.6 (17.6-22.0) months and 28.0 (25.0-29.0) months for the DFCI and MSKCC cohorts, respectively. Seven solid tumor subtypes were examined. In the DFCI cohort, LOF variants of mSWI/SNF did not predict improved overall survival (OS), time-to-treatment failure (TTF), or disease control rate. Only patients with renal cell carcinoma with mSWI/SNF LOF showed significantly improved OS and TTF with adjusted HRs (95% confidence interval) of 0.33 (0.16-0.7) and 0.49 (0.27-0.88), respectively, and this was mostly driven by PRBM1 In the MSKCC cohort, where only OS was captured, LOF mSWI/SNF did not correlate with improved outcomes across any tumor subtype. We did not find a consistent association between mSWI/SNF LOF variants and improved clinical outcomes to ICIs, suggesting that mSWI/SNF variants should not be considered as biomarkers of response to ICIs.
PMCID:7415546
PMID: 32321774
ISSN: 2326-6074
CID: 5924792
Results of a Multicenter Phase II Study of Atezolizumab and Bevacizumab for Patients With Metastatic Renal Cell Carcinoma With Variant Histology and/or Sarcomatoid Features
McGregor, Bradley A; McKay, Rana R; Braun, David A; Werner, Lillian; Gray, Kathryn; Flaifel, Abdallah; Signoretti, Sabina; Hirsch, Michelle S; Steinharter, John A; Bakouny, Ziad; Flippot, Ronan; Wei, Xiao X; Choudhury, Atish; Kilbridge, Kerry; Freeman, Gordon J; Van Allen, Eliezer M; Harshman, Lauren C; McDermott, David F; Vaishampayan, Ulka; Choueiri, Toni K
PURPOSE:In this multicenter phase II trial, we evaluated atezolizumab combined with bevacizumab in patients with advanced renal cell carcinoma (RCC) with variant histology or any RCC histology with ≥ 20% sarcomatoid differentiation. PATIENTS AND METHODS:Eligible patients may have received previous systemic therapy, excluding prior bevacizumab or checkpoint inhibitors. Patients underwent a baseline biopsy and received atezolizumab 1,200 mg and bevacizumab 15 mg/kg intravenously every 3 weeks. The primary end point was overall response rate (ORR) by RECIST version 1.1. Additional end points were progression-free survival (PFS), toxicity, biomarkers of response as determined by programmed death-ligand 1 (PD-L1) status, and on-therapy quality-of-life (QOL) metrics using the Functional Assessment of Cancer Therapy Kidney Symptom Index-19 and the Brief Fatigue Inventory. RESULTS:19% (n = 4) in PD-L1-negative patients. Eight patients (13%) developed treatment-related grade 3 toxicities. There were no treatment-related grade 4-5 toxicities. QOL was maintained throughout therapy. CONCLUSION:In this study, atezolizumab and bevacizumab demonstrated safety and resulted in objective responses in patients with variant histology RCC or RCC with ≥ 20% sarcomatoid differentiation. This regimen warrants additional exploration in patients with rare RCC, particularly those with PD-L1-positive tumors.
PMID: 31721643
ISSN: 1527-7755
CID: 5924782
SARS-CoV-2 Is Not Detected in the Cerebrospinal Fluid of Encephalopathic COVID-19 Patients
Placantonakis, Dimitris G; Aguero-Rosenfeld, Maria; Flaifel, Abdallah; Colavito, John; Inglima, Kenneth; Zagzag, David; Snuderl, Matija; Louie, Eddie; Frontera, Jennifer Ann; Lewis, Ariane
Neurologic manifestations of the novel coronavirus SARS-CoV-2 infection have received wide attention, but the mechanisms remain uncertain. Here, we describe computational data from public domain RNA-seq datasets and cerebrospinal fluid data from adult patients with severe COVID-19 pneumonia that suggest that SARS-CoV-2 infection of the central nervous system is unlikely. We found that the mRNAs encoding the ACE2 receptor and the TMPRSS2 transmembrane serine protease, both of which are required for viral entry into host cells, are minimally expressed in the major cell types of the brain. In addition, CSF samples from 13 adult encephalopathic COVID-19 patients diagnosed with the viral infection via nasopharyngeal swab RT-PCR did not show evidence for the virus. This particular finding is robust for two reasons. First, the RT-PCR diagnostic was validated for CSF studies using stringent criteria; and second, 61% of these patients had CSF testing within 1 week of a positive nasopharyngeal diagnostic test. We propose that neurologic sequelae of COVID-19 are not due to SARS-CoV-2 meningoencephalitis and that other etiologies are more likely mechanisms.
PMCID:7759491
PMID: 33362695
ISSN: 1664-2295
CID: 4731452
irRECIST for the Evaluation of Candidate Biomarkers of Response to Nivolumab in Metastatic Clear Cell Renal Cell Carcinoma: Analysis of a Phase II Prospective Clinical Trial
Pignon, Jean-Christophe; Jegede, Opeyemi; Shukla, Sachet A; Braun, David A; Horak, Christine E; Wind-Rotolo, Megan; Ishii, Yuko; Catalano, Paul J; Grosha, Jonian; Flaifel, Abdallah; Novak, Jesse S; Mahoney, Kathleen M; Freeman, Gordon J; Sharpe, Arlene H; Hodi, F Stephen; Motzer, Robert J; Choueiri, Toni K; Wu, Catherine J; Atkins, Michael B; McDermott, David F; Signoretti, Sabina
PURPOSE:Immune-related RECIST (irRECIST) were designed to capture atypical responses seen with immunotherapy. We hypothesized that, in patients with metastatic clear cell renal cell carcinoma (mccRCC), candidate biomarkers for nivolumab response would show improved association with clinical endpoints capturing atypical responders (irRECIST) compared with standard clinical endpoints (RECISTv1.1). EXPERIMENTAL DESIGN:Endpoints based on RECISTv1.1 [objective response rate (ORR)/progression-free survival (PFS)] or irRECIST [immune-related ORR (irORR)/immune-related PFS (irPFS)] were compared in patients enrolled in the CheckMate-010 trial. Pretreatment tumors were analyzed by PD-L1 and PD-L2 IHC, and by multiplex immunofluorescence for CD8, PD-1, TIM-3, and LAG-3. T-cell activation signatures were assessed by RNA sequencing. RESULTS:TIC identified three groups of patients for which irPFS and irORR were significantly different. CONCLUSIONS:TIC may predict outcome on nivolumab in mccRCC.
PMCID:6445699
PMID: 30670497
ISSN: 1557-3265
CID: 5924762