Try a new search

Format these results:

Searched for:

in-biosketch:true

person:vargah03

Total Results:

259


Author Correction: Predicting standardized uptake value of brown adipose tissue from CT scans using convolutional neural networks

Erdil, Ertunc; Becker, Anton S; Schwyzer, Moritz; Martinez-Tellez, Borja; Ruiz, Jonatan R; Sartoretti, Thomas; Vargas, H Alberto; Burger, A Irene; Chirindel, Alin; Wild, Damian; Zamboni, Nicola; Deplancke, Bart; Gardeux, Vincent; Maushart, Claudia Irene; Betz, Matthias Johannes; Wolfrum, Christian; Konukoglu, Ender
PMID: 39562561
ISSN: 2041-1723
CID: 5758502

The "Hungry Judge" effect on prostate MRI reporting: Chronobiological trends from 35'004 radiologist interpretations

Becker, Anton S; Woo, Sungmin; Leithner, Doris; Tong, Angela; Mayerhoefer, Marius E; Vargas, H Alberto
AIM/OBJECTIVE:To investigate the associations between the hour of the day and Prostate Imaging-Reporting and Data System (PI-RADS) scores assigned by radiologists in prostate MRI reports. MATERIALS AND METHODS/METHODS:Retrospective single-center collection of prostate MRI reports over an 8-year period. Mean PI-RADS scores assigned between 0800 and 1800 h were examined with a regression model. RESULTS: = 0.005, p < 0.001), with malignant scores more frequently assigned later in the day. CONCLUSION/CONCLUSIONS:These findings suggest chronobiological factors may contribute to variability in radiological assessments. Though the magnitude of the effect is small, this may potentially add variability and impact diagnostic accuracy.
PMID: 39128251
ISSN: 1872-7727
CID: 5701892

Predicting standardized uptake value of brown adipose tissue from CT scans using convolutional neural networks

Erdil, Ertunc; Becker, Anton S; Schwyzer, Moritz; Martinez-Tellez, Borja; Ruiz, Jonatan R; Sartoretti, Thomas; Vargas, H Alberto; Burger, A Irene; Chirindel, Alin; Wild, Damian; Zamboni, Nicola; Deplancke, Bart; Gardeux, Vincent; Maushart, Claudia Irene; Betz, Matthias Johannes; Wolfrum, Christian; Konukoglu, Ender
The standard method for identifying active Brown Adipose Tissue (BAT) is [18F]-Fluorodeoxyglucose ([18F]-FDG) PET/CT imaging, which is costly and exposes patients to radiation, making it impractical for population studies. These issues can be addressed with computational methods that predict [18F]-FDG uptake by BAT from CT; earlier population studies pave the way for developing such methods by showing some correlation between the Hounsfield Unit (HU) of BAT in CT and the corresponding [18F]-FDG uptake in PET. In this study, we propose training convolutional neural networks (CNNs) to predict [18F]-FDG uptake by BAT from unenhanced CT scans in the restricted regions that are likely to contain BAT. Using the Attention U-Net architecture, we perform experiments on datasets from four different cohorts, the largest study to date. We segment BAT regions using predicted [18F]-FDG uptake values, achieving 23% to 40% better accuracy than conventional CT thresholding. Additionally, BAT volumes computed from the segmentations distinguish the subjects with and without active BAT with an AUC of 0.8, compared to 0.6 for CT thresholding. These findings suggest CNNs can facilitate large-scale imaging studies more efficiently and cost-effectively using only CT.
PMCID:11436835
PMID: 39333526
ISSN: 2041-1723
CID: 5714142

Utility of ADC Values for Differentiating Uterine Sarcomas From Leiomyomas: Systematic Review and Meta-Analysis

Woo, Sungmin; Beier, Sarah R; Tong, Angela; Hindman, Nicole M; Vargas, Hebert A; Kang, Stella K
PMID: 38899844
ISSN: 1546-3141
CID: 5672242

Microsatellite Instability, Tumor Mutational Burden, and Response to Immune Checkpoint Blockade in Patients with Prostate Cancer

Lenis, Andrew T; Ravichandran, Vignesh; Brown, Samantha; Alam, Syed M; Katims, Andrew; Truong, Hong; Reisz, Peter A; Vasselman, Samantha; Nweji, Barbara; Autio, Karen A; Morris, Michael J; Slovin, Susan F; Rathkopf, Dana; Danila, Daniel; Woo, Sungmin; Vargas, Hebert A; Laudone, Vincent P; Ehdaie, Behfar; Reuter, Victor; Arcila, Maria; Berger, Michael F; Viale, Agnes; Scher, Howard I; Schultz, Nikolaus; Gopalan, Anuradha; Donoghue, Mark T A; Ostrovnaya, Irina; Stopsack, Konrad H; Solit, David B; Abida, Wassim
PURPOSE/UNASSIGNED:Patients with microsatellite instability-high/mismatch repair-deficient (MSI-H/dMMR) and high tumor mutational burden (TMB-H) prostate cancers are candidates for pembrolizumab. We define the genomic features, clinical course, and response to immune checkpoint blockade (ICB) in patients with MSI-H/dMMR and TMB-H prostate cancers without MSI [TMB-H/microsatellite stable (MSS)]. EXPERIMENTAL DESIGN/UNASSIGNED:We sequenced 3,244 tumors from 2,257 patients with prostate cancer. MSI-H/dMMR prostate cancer was defined as an MSIsensor score ≥10 or MSIsensor score ≥3 and <10 with a deleterious MMR alteration. TMB-H was defined as ≥10 mutations/megabase. PSA50 and RECIST responses were assigned. Overall survival and radiographic progression-free survival (rPFS) were compared using log-rank test. RESULTS/UNASSIGNED:Sixty-three (2.8%) men had MSI-H/dMMR, and 33 (1.5%) had TMB-H/MSS prostate cancers. Patients with MSI-H/dMMR and TMB-H/MSS tumors more commonly presented with grade group 5 and metastatic disease at diagnosis. MSI-H/dMMR tumors had higher TMB, indel, and neoantigen burden compared with TMB-H/MSS. Twenty-seven patients with MSI-H/dMMR and 8 patients with TMB-H/MSS tumors received ICB, none of whom harbored polymerase epsilon (polE) catalytic subunit mutations. About 45% of patients with MSI-H/dMMR had a RECIST response, and 65% had a PSA50 response. No patient with TMB-H/MSS had a RECIST response, and 50% had a PSA50 response. rPFS tended to be longer in patients with MSI-H/dMMR than in patients with TMB-H/MSS who received immunotherapy. Pronounced differences in genomics, TMB, or MSIsensor score were not detected between MSI-H/dMMR responders and nonresponders. CONCLUSIONS/UNASSIGNED:MSI-H/dMMR prostate cancers have greater TMB, indel, and neoantigen burden than TMB-H/MSS prostate cancers, and these differences may contribute to profound and durable responses to ICB.
PMCID:11371520
PMID: 38949888
ISSN: 1557-3265
CID: 5732672

Pictorial review of multiparametric MRI in bladder urothelial carcinoma with variant histology: pearls and pitfalls

Arita, Yuki; Woo, Sungmin; Kwee, Thomas C; Shigeta, Keisuke; Ueda, Ryo; Nalavenkata, Sunny; Edo, Hiromi; Miyai, Kosuke; Das, Jeeban; Andrieu, Pamela I Causa; Vargas, Hebert Alberto
Bladder cancer (BC), predominantly comprising urothelial carcinomas (UCs), ranks as the tenth most common cancer worldwide. UCs with variant histology (variant UC), including squamous differentiation, glandular differentiation, plasmacytoid variant, micropapillary variant, sarcomatoid variant, and nested variant, accounting for 5-10% of cases, exhibit more aggressive and advanced tumor characteristics compared to pure UC. The Vesical Imaging-Reporting and Data System (VI-RADS), established in 2018, provides guidelines for the preoperative evaluation of muscle-invasive bladder cancer (MIBC) using multiparametric magnetic resonance imaging (mpMRI). This technique integrates T2-weighted imaging (T2WI), dynamic contrast-enhanced (DCE)-MRI, and diffusion-weighted imaging (DWI) to distinguish MIBC from non-muscle-invasive bladder cancer (NMIBC). VI-RADS has demonstrated high diagnostic performance in differentiating these two categories for pure UC. However, its accuracy in detecting muscle invasion in variant UCs is currently under investigation. These variant UCs are associated with a higher likelihood of disease recurrence and require precise preoperative assessment and immediate surgical intervention. This review highlights the potential value of mpMRI for different variant UCs and explores the clinical implications and prospects of VI-RADS in managing these patients, emphasizing the need for careful interpretation of mpMRI examinations including DCE-MRI, particularly given the heterogeneity and aggressive nature of variant UCs. Additionally, the review addresses the fundamental MRI reading procedures, discusses potential causes of diagnostic errors, and considers future directions in the use of artificial intelligence and radiomics to further optimize the bladder MRI protocol.
PMID: 38847848
ISSN: 2366-0058
CID: 5665842

Deep Learning Prostate MRI Segmentation Accuracy and Robustness: A Systematic Review

Fassia, Mohammad-Kasim; Balasubramanian, Adithya; Woo, Sungmin; Vargas, Hebert Alberto; Hricak, Hedvig; Konukoglu, Ender; Becker, Anton S
Purpose To investigate the accuracy and robustness of prostate segmentation using deep learning across various training data sizes, MRI vendors, prostate zones, and testing methods relative to fellowship-trained diagnostic radiologists. Materials and Methods In this systematic review, Embase, PubMed, Scopus, and Web of Science databases were queried for English-language articles using keywords and related terms for prostate MRI segmentation and deep learning algorithms dated to July 31, 2022. A total of 691 articles from the search query were collected and subsequently filtered to 48 on the basis of predefined inclusion and exclusion criteria. Multiple characteristics were extracted from selected studies, such as deep learning algorithm performance, MRI vendor, and training dataset features. The primary outcome was comparison of mean Dice similarity coefficient (DSC) for prostate segmentation for deep learning algorithms versus diagnostic radiologists. Results Forty-eight studies were included. Most published deep learning algorithms for whole prostate gland segmentation (39 of 42 [93%]) had a DSC at or above expert level (DSC ≥ 0.86). The mean DSC was 0.79 ± 0.06 (SD) for peripheral zone, 0.87 ± 0.05 for transition zone, and 0.90 ± 0.04 for whole prostate gland segmentation. For selected studies that used one major MRI vendor, the mean DSCs of each were as follows: General Electric (three of 48 studies), 0.92 ± 0.03; Philips (four of 48 studies), 0.92 ± 0.02; and Siemens (six of 48 studies), 0.91 ± 0.03. Conclusion Deep learning algorithms for prostate MRI segmentation demonstrated accuracy similar to that of expert radiologists despite varying parameters; therefore, future research should shift toward evaluating segmentation robustness and patient outcomes across diverse clinical settings. Keywords: MRI, Genital/Reproductive, Prostate Segmentation, Deep Learning Systematic review registration link: osf.io/nxaev © RSNA, 2024.
PMCID:11294957
PMID: 38568094
ISSN: 2638-6100
CID: 5787682

Streamlining Radiology Workflows Through the Development and Deployment of Automated Microservices

Becker, Anton S; Chaim, Joshua; Vargas, Hebert Alberto
Microservices are a software development approach where an application is structured as a collection of loosely coupled, independently deployable services, each focusing on executing a specific purpose. The development of microservices could have a significant impact on radiology workflows, allowing routine tasks to be automated and improving the efficiency and accuracy of radiologic tasks. This technical report describes the development of several microservices that have been successfully deployed in a tertiary cancer center, resulting in substantial time savings for radiologists and other staff involved in radiology workflows. These microservices include the automatic generation of shift emails, notifying administrative staff and faculty about fellows on rotation, notifying referring physicians about outside examinations, and populating report templates with information from PACS and RIS. The report outlines the common thought process behind developing these microservices, including identifying a problem, connecting various APIs, collecting data in a database, writing a prototype and deploying it, gathering feedback and refining the service, putting it in production, and identifying staff who are in charge of maintaining the service. The report concludes by discussing the benefits and challenges of microservices in radiology workflows, highlighting the importance of multidisciplinary collaboration, interoperability, security, and privacy.
PMID: 38351225
ISSN: 2948-2933
CID: 5635702

Clinical application of bladder MRI and the Vesical Imaging-Reporting and Data System

Panebianco, Valeria; Briganti, Alberto; Boellaard, Thierry N; Catto, James; Comperat, Eva; Efstathiou, Jason; van der Heijden, Antoine G; Giannarini, Gianluca; Girometti, Rossano; Mertens, Laura; Takeuchi, Mitsuru; Muglia, Valdair F; Narumi, Yoshifumi; Novara, Giacomo; Pecoraro, Martina; Roupret, Morgan; Sanguedolce, Francesco; Santini, Daniele; Shariat, Shahrokh F; Simone, Giuseppe; Vargas, Hebert A; Woo, Sungmin; Barentsz, Jelle; Witjes, J Alfred
Diagnostic work-up and risk stratification in patients with bladder cancer before and after treatment must be refined to optimize management and improve outcomes. MRI has been suggested as a non-invasive technique for bladder cancer staging and assessment of response to systemic therapy. The Vesical Imaging-Reporting And Data System (VI-RADS) was developed to standardize bladder MRI image acquisition, interpretation and reporting and enables accurate prediction of muscle-wall invasion of bladder cancer. MRI is available in many centres but is not yet recommended as a first-line test for bladder cancer owing to a lack of high-quality evidence. Consensus-based evidence on the use of MRI-VI-RADS for bladder cancer care is needed to serve as a benchmark for formulating guidelines and research agendas until further evidence from randomized trials becomes available.
PMID: 38036666
ISSN: 1759-4820
CID: 5787662

Bridging Communication Gaps Between Radiologists, Referring Physicians, and Patients Through Standardized Structured Cancer Imaging Reporting: The Experience with Female Pelvic MRI Assessment Using O-RADS and a Simulated Cohort Patient Group

Woo, Sungmin; Andrieu, Pamela Causa; Abu-Rustum, Nadeem R; Broach, Vance; Zivanovic, Oliver; Sonoda, Yukio; Chi, Dennis S; Aviki, Emeline; Ellis, Annie; Carayon, Pascale; Hricak, Hedvig; Vargas, Hebert A
RATIONALE AND OBJECTIVES:This study aimed to evaluate whether implementing structured reporting based on Ovarian-Adnexal Reporting and Data System (O-RADS) magnetic resonance imaging (MRI) in women with sonographically indeterminate adnexal masses improves communication between radiologists, referrers, and patients/caregivers and enhances diagnostic performance for determining adnexal malignancy. MATERIALS AND METHODS:We retrospectively analyzed prospectively issued MRI reports in 2019-2022 performed for characterizing adnexal masses before and after implementing O-RADS MRI; 56 patients/caregivers and nine gynecologic oncologists ("referrers") were surveyed about report interpretability/clarity/satisfaction; responses for pre- and post-implementation reports were compared using Fisher's exact and Chi-squared tests. Diagnostic performance was assessed using receiver operating characteristic curves. RESULTS:A total of 123 reports from before and 119 reports from after O-RADS MRI implementation were included. Survey response rates were 35.7% (20/56) for patients/caregivers and 66.7% (6/9) for referrers. For patients/caregivers, O-RADS MRI reports were clearer (p < 0.001) and more satisfactory (p < 0.001) than unstructured reports, but interpretability did not differ significantly (p = 0.14), as 28.0% (28/100) of postimplementation and 38.0% (38/100) of preimplementation reports were considered difficult to interpret. For referrers, O-RADS MRI reports were clearer, more satisfactory, and easier to interpret (p < 0.001); only 1.3% (1/77) were considered difficult to interpret. For differentiating benign from malignant adnexal lesions, O-RADS MRI showed area under the curve of 0.92 (95% confidence interval [CI], 0.85-0.99), sensitivity of 0.81 (95% CI, 0.58-0.95), and specificity of 0.91 (95% CI, 0.83-0.96). Diagnostic performance of reports before implementation could not be calculated due to many different phrases used to describe the likelihood of malignancy. CONCLUSION:Implementing standardized structured reporting using O-RADS MRI for characterizing adnexal masses improved clarity and satisfaction for patients/caregivers and referrers. Interpretability improved for referrers but remained limited for patients/caregivers.
PMID: 37661555
ISSN: 1878-4046
CID: 5669722