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Spatial and multiomics analysis of human and mouse lung adenocarcinoma precursors reveals TIM-3 as a putative target for precancer interception
Zhu, Bo; Chen, Pingjun; Aminu, Muhammad; Li, Jian-Rong; Fujimoto, Junya; Tian, Yanhua; Hong, Lingzhi; Chen, Hong; Hu, Xin; Li, Chenyang; Vokes, Natalie; Moreira, Andre L; Gibbons, Don L; Solis Soto, Luisa M; Parra Cuentas, Edwin Roger; Shi, Ou; Diao, Songhui; Ye, Jie; Rojas, Frank R; Vilar, Eduardo; Maitra, Anirban; Chen, Ken; Navin, Nicolas; Nilsson, Monique; Huang, Beibei; Heeke, Simon; Zhang, Jianhua; Haymaker, Cara L; Velcheti, Vamsidhar; Sterman, Daniel H; Kochat, Veena; Padron, William I; Alexandrov, Ludmil B; Wei, Zhubo; Le, Xiuning; Wang, Linghua; Fukuoka, Junya; Lee, J Jack; Wistuba, Ignacio I; Pass, Harvey I; Davis, Mark; Hannash, Samir; Cheng, Chao; Dubinett, Steven; Spira, Avrum; Rai, Kunal; Lippman, Scott M; Futreal, P Andrew; Heymach, John V; Reuben, Alexandre; Wu, Jia; Zhang, Jianjun
How tumor microenvironment shapes lung adenocarcinoma (LUAD) precancer evolution remains poorly understood. Spatial immune profiling of 114 human LUAD and LUAD precursors reveals a progressive increase of adaptive response and a relative decrease of innate immune response as LUAD precursors progress. The immune evasion features align the immune response patterns at various stages. TIM-3-high features are enriched in LUAD precancers, which decrease in later stages. Furthermore, single-cell RNA sequencing (scRNA-seq) and spatial immune and transcriptomics profiling of LUAD and LUAD precursor specimens from 5 mouse models validate high TIM-3 features in LUAD precancers. In vivo TIM-3 blockade at precancer stage, but not at advanced cancer stage, decreases tumor burden. Anti-TIM-3 treatment is associated with enhanced antigen presentation, T cell activation, and increased M1/M2 macrophage ratio. These results highlight the coordination of innate and adaptive immune response/evasion during LUAD precancer evolution and suggest TIM-3 as a potential target for LUAD precancer interception.
PMID: 40345189
ISSN: 1878-3686
CID: 5839592
Changing Treatment and Metastatic Disease Patterns in Patients with EGFR Mutated NSCLC: An Academic Thoracic Medical Investigator's Consortium Registry Analysis
Stalker, Margaret; Grady, Connor B; Watts, Alex; Hwang, Wei-Ting; Chandrasekhara, Krishna; Sun, Fangdi; Liu, Geoffrey; Patel, Devalben; Nieva, Jorge; Herrmann, Amanda; Marrone, Kristen; Lam, Vincent K; Velcheti, Vamsidhar; Liu, Stephen V; Bravo Montenegro, Gabriela Liliana; Tompkins, William; Patil, Tejas; Weiss, Jared; Miller, Kelsey Leigh; Schwartzman, William; Dowell, Jonathan E; Shaverdashvili, Khvaramze; Villaruz, Liza; Cass, Amanda; Iams, Wade; Aisner, Dara; Aggarwal, Charu; Camidge, D Ross; Sun, Lova; Marmarelis, Melina E
INTRODUCTION/UNASSIGNED:Osimertinib is now a standard first-line (1L) therapy for EGFR-mutated (EGFRm) advanced NSCLC. We aimed to characterize patterns of therapy and longitudinal risk of brain and liver metastasis in a cohort of EGFRm NSCLC. METHODS/UNASSIGNED:Patients with metastatic EGFRm NSCLC who received 1L systemic therapy at sites within the Academic Thoracic Medical Investigator's Consortium were included; demographic and clinical data including treatment patterns were described. Analyses of overall survival, time to next treatment, and incident brain and liver metastasis were performed using the Kaplan-Meier method, Cox regression, and cumulative incidence functions on patients who started 1L therapy in 2015 or later. RESULTS/UNASSIGNED:The full cohort included 1132 patients and the mean age of the participants was 63.4 years; among the participants, 53% were White individuals, 68% were female individuals, and 67% were nonsmokers. Among the participants, 830 patients received 1L systemic therapy in 2015 or later. The predominant first EGFR-tyrosine kinase inhibitor was erlotinib (65%) before 2018 and osimertinib (81%) after 2018. The median time to the next treatment after the start of 1L therapy was 13.9 months overall and the longest in patients receiving 1L osimertinib (28 months). In the post-2015 cohort, the baseline prevalence of brain metastasis (BM) was 54% and among patients without baseline brain metastasis, the probability of incident BM at 12, 24, and 48 months was 8%, 22%, and 44%, respectively. Development of an on-treatment brain metastasis among patients without baseline brain metastasis was associated with a 3.2 times higher risk of death. CONCLUSION/UNASSIGNED:Even in a contemporary era with prevalent osimertinib use, the baseline and longitudinal risk of BM development was high. The ongoing risk of developing BM, together with the associated survival detriment, argues for routine surveillance of the brain through magnetic resonance imaging for patients with EGFRm NSCLC, which is not currently included in the guidelines.
PMCID:11699429
PMID: 39758601
ISSN: 2666-3643
CID: 5804822
The evolution of lung adenocarcinoma precursors is associated with chromosomal instability and transition from innate to adaptive immune response/evasion
Hu, Xin; Zhu, Bo; Vokes, Natalie; Fujimoto, Junya; Rojas Alvarez, Frank R; Heeke, Simon; Moreira, Andre L; Solis, Luisa M; Haymaker, Cara; Velcheti, Vamsidhar; Sterman, Daniel H; Pass, Harvey I; Cheng, Chao; Lee, Jack J; Zhang, Jianhua; Wei, Zhubo; Wu, Jia; Le, Xiuning; Ostrin, Edwin; Toumazis, Iakovos; Gibbons, Don; Su, Dan; Fukuoka, Junya; Antonoff, Mara B; Gerber, David E; Li, Chenyang; Kadara, Humam; Wang, Linghua; Davis, Mark; Heymach, John V; Hannash, Samir; Wistuba, Ignacio; Dubinett, Steven; Alexandrov, Ludmil; Lippman, Scott; Spira, Avrum; Futreal, Andrew P; Reuben, Alexandre; Zhang, Jianjun
Studying lung adenocarcinoma (LUAD) early carcinogenesis is challenging, primarily due to the lack of LUAD precursors specimens. We amassed multi-omics data from 213 LUAD and LUAD precursors to identify molecular features underlying LUAD precancer evolution. We observed progressively increasing mutations, chromosomal aberrations, whole genome doubling and genomic instability from precancer to invasive LUAD, indicating aggravating chromosomal instability (CIN). Telomere shortening, a crucial genomic alteration linked to CIN, emerged at precancer stage. Moreover, later-stage lesions demonstrated increasing cancer stemness and decreasing alveolar identity, suggesting epithelial de-differentiation during early LUAD carcinogenesis. The innate immune cells progressively diminished from precancer to invasive LUAD, concomitant with a gradual recruitment of adaptive immune cells (except CD8+ and gamma-delta T cells that decreased in later stages) and upregulation of numerous immune checkpoints, suggesting LUAD precancer evolution is associated with a shift from innate to adaptive immune response and immune evasion mediated by various mechanisms.
PMCID:11118701
PMID: 38798564
ISSN: 2693-5015
CID: 6042382
Nemvaleukin alfa, a modified interleukin-2 cytokine, as monotherapy and with pembrolizumab in patients with advanced solid tumors (ARTISTRY-1)
Vaishampayan, Ulka N; Muzaffar, Jameel; Winer, Ira; Rosen, Seth D; Hoimes, Christoper J; Chauhan, Aman; Spreafico, Anna; Lewis, Karl D; Bruno, Debora S; Dumas, Olivier; McDermott, David F; Strauss, James F; Chu, Quincy S; Gilbert, Lucy; Chaudhry, Arvind; Calvo, Emiliano; Dalal, Rita; Boni, Valentina; Ernstoff, Marc S; Velcheti, Vamsidhar
BACKGROUND:T cells and natural killer cells, with minimal expansion of regulatory T cells, thereby mitigating the risk of toxicities associated with high-affinity interleukin-2 receptor activation. Clinical outcomes with nemvaleukin are unknown. ARTISTRY-1 investigated the safety, recommended phase 2 dose (RP2D), and antitumor activity of nemvaleukin in patients with advanced solid tumors. METHODS:This was a three-part, open-label, phase 1/2 study: part A, dose-escalation monotherapy, part B, dose-expansion monotherapy, and part C, combination therapy with pembrolizumab. The study was conducted at 32 sites in 7 countries. Adult patients with advanced solid tumors were enrolled and received intravenous nemvaleukin once daily on days 1-5 (21-day cycle) at 0.1-10 µg/kg/day (part A), or at the RP2D (part B), or with pembrolizumab (part C). Primary endpoints were RP2D selection and dose-limiting toxicities (part A), and overall response rate (ORR) and safety (parts B and C). RESULTS:T and natural killer cell expansion, and minimal regulatory T cell expansion were observed following nemvaleukin treatment. ORR with nemvaleukin plus pembrolizumab was 13% (19/144; 95% CI 8 to 20), with 5 complete and 14 partial responses; 6 responses were in PD-(L)1 inhibitor-approved and five in PD-(L)1 inhibitor-unapproved tumor types. Three responses were in patients with platinum-resistant ovarian cancer. The most common grade 3-4 treatment-related adverse events (TRAEs) in parts B and C, respectively, were neutropenia (49%, 21%) and anemia (10%, 11%); 4% of patients in each part discontinued due to TRAEs. CONCLUSIONS:Nemvaleukin was well tolerated and demonstrated promising antitumor activity across heavily pretreated advanced solid tumors. Phase 2/3 studies of nemvaleukin are ongoing. TRIAL REGISTRATION NUMBER/BACKGROUND:NCT02799095.
PMCID:11580269
PMID: 39567211
ISSN: 2051-1426
CID: 5779782
Determining Line of Therapy from Real-World Data in Non-Small Cell Lung Cancer
Grady, Connor B; Hwang, Wei-Ting; Reuss, Joshua E; Iams, Wade; Cass, Amanda; Liu, Geoffrey; Patel, Devalben; Liu, Stephen V; Montenegro, Gabriela Liliana Bravo; Patil, Tejas; Nieva, Jorge J; Herrmann, Amanda; Marrone, Kristen A; Lam, Vincent K; Schwartzman, William; Dowell, Jonathan; Villaruz, Liza C; Miller, Kelsey Leigh; Weiss, Jared; Sun, Fangdi; Velcheti, Vamsidhar; Camidge, D Ross; Aggarwal, Charu; Sun, Lova; Marmarelis, Melina E
INTRODUCTION:Determining lines of therapy (LOT) using real-world data is crucial to inform clinical decisions and support clinical research. Existing rules for determining LOT in patients with metastatic non-small cell lung cancer (mNSCLC) do not incorporate the growing number of targeted therapies used in treatment today. Therefore, we propose rules for determining LOT from real-world data of patients with mNSCLC treated with targeted therapies. METHODS:LOT rules were developed through expert consensus using a real-world cohort of 550 patients with ALK+ or ROS1+ mNSCLC in the multi-institutional, electronic medical record-based Academic Thoracic Oncology Medical Investigators Consortium's (ATOMIC) Driver Mutation Registry. Rules were subsequently modified based on a review of appropriate LOT determination. These resulting rules were then applied to an independent cohort of patients with EGFR+ mNSCLC to illustrate their use. RESULTS:Six rules for determining LOTs were developed. Among 1133 patients with EGFR mutations and mNSCLC, a total of 3168 regimens were recorded with a median of 2 regimens per patient (IQR, 1-4; range, 1-13). After applying our rules, there were 2834 total LOTs with a median of 2 LOTs per patient (IQR, 1-3; range, 1-11). Rules 1-3 kept 11% of regimen changes from advancing the LOT. When compared to previously published rules, LOT assignments differed 5.7% of the time, mostly in LOTs with targeted therapy. CONCLUSION:These rules provide an updated framework to evaluate current treatment patterns, accounting for the increased use of targeted therapies in patients with mNSCLC, and promote standardization of methods for determining LOT from real-world data.
PMCID:11588435
PMID: 39586662
ISSN: 1099-1557
CID: 5763472
Beyond clinical trials: real-world impact of immunotherapy on NSCLC in Jordan
Abu Hejleh, Taher; AlSawalha, Karim; Abdel Hafiz, Sufian; Al-Batsh, Tamer; Abu Hejleh, Roaa; Yaser, Sameer; Abu Jazar, Husam; Khader, Jamal; Alnsour, Anoud; Mohamad, Issa; Abdel Jalil, Riad; Abu-Shanab, Ahmad; Gharaibeh, Azza; Abu Shattal, Mohammad; Alibraheem, Akram; Haddad, Hussam; Mahmoud, Naser; Obeidat, Shadi; Al-Jaghbeer, Mohammed J; Furqan, Muhammad; Cortellini, Alessio; Velcheti, Vamsidhar; Al-Rabi, Kamal
BACKGROUND/UNASSIGNED:This study aims to evaluate real-world (rw) outcomes of immunotherapy (IO) for advanced stage NSCLC at King Hussein Cancer Center (KHCC) in Jordan. METHODS/UNASSIGNED:Advanced stage NSCLC patients who received IO at KHCC between 2017 and 2022 were included. The data were retrospectively collected. PFS and OS were estimated for patients with ECOG performance status (ECOG PS) 0-1. Cox regression analyzed predictors of OS in first-line (1L) IO, regardless of performance status. RESULTS/UNASSIGNED:= 0.005). CONCLUSION/UNASSIGNED:This real-world study of advanced-stage NSCLC patients treated with immunotherapy at KHCC reveals outcomes that fall short of those anticipated from clinical trials. The inclusion of Middle Eastern patients in lung cancer trials is essential to ensure adequate representation of various ethnicities in clinical research.
PMCID:11091385
PMID: 38746680
ISSN: 2234-943x
CID: 5733592
Immune Checkpoint Inhibitors in the Management of Brain Metastases from Non-Small Cell Lung Cancer: A Comprehensive Review of Current Trials, Guidelines and Future Directions
Ranjan, Tulika; Podder, Vivek; Margolin, Kim; Velcheti, Vamsidhar; Maharaj, Arun; Ahluwalia, Manmeet Singh
BACKGROUND:Brain metastases (BM) are a common, severe complication in patients with non-small cell lung cancer (NSCLC) and are difficult to treat due to their complex tumor biology and the intricate microenvironment of the brain. OBJECTIVES/OBJECTIVE:This review examines the current role of immune checkpoint inhibitors (ICIs) in treating NSCLC with BM, focusing on the latest clinical trials, emerging strategies, current guidelines, and future directions. We highlight the efficacy of ICIs as monotherapy and in combination with other treatments such as radiotherapy, stereotactic radiosurgery, chemotherapy, and anti-VEGF agents. RESULTS:While no single treatment sequence is universally accepted, combining ICIs with traditional therapies forms the core of the current treatment protocols. ICIs targeting the PD-1/PD-L1 pathway have significantly advanced NSCLC treatment, demonstrated by improved overall and progression-free survival in various settings. However, optimizing these benefits requires careful consideration of potential side effects, including cognitive decline and radiation necrosis, and the impact of steroid use on ICI efficacy. CONCLUSION/CONCLUSIONS:The review underscores the necessity for a personalized, integrated multidisciplinary treatment approach. Future research should focus on refining combination therapies and understanding the optimal sequence and timing of treatment.
PMCID:11475580
PMID: 39410008
ISSN: 2072-6694
CID: 5718512
Objective Analysis and Clinical Significance of the Spatial Tumor-Infiltrating Lymphocyte Patterns in Non-Small Cell Lung Cancer
Lopez de Rodas, Miguel; Wang, Yvonne; Peng, Gang; Gu, Jianlei; Mino-Kenudson, Mari; Riess, Jonathan W; Velcheti, Vamsidhar; Hellmann, Matthew; Gainor, Justin F; Zhao, Hongyu; Schalper, Kurt A
PURPOSE:The spatial arrangement of lymphocytes in the tumor bed (e.g., immune infiltrated, immune excluded, immune desert) is expected to reflect distinct immune evasion mechanisms and to associate with immunotherapy outcomes. However, data supporting these associations are scant and limited by the lack of a clear definition for lymphocyte infiltration patterns and the subjective nature of pathology-based approaches. EXPERIMENTAL DESIGN:We used multiplexed immunofluorescence to study major tumor-infiltrating lymphocyte (TIL) subsets with single-cell resolution in baseline whole-tissue section samples from NSCLC patients treated with immune checkpoint inhibitors (ICI). The spatial TIL patterns were analyzed using a qualitative pathologist-based approach, and an objective analysis of TIL density ratios in tumor/stromal tissues. The association of spatial patterns with outcomes was studied for different TIL markers. RESULTS:The analysis of CD8+ TIL patterns using qualitative assessment identified prominent limitations including the presence of a broad spectrum of phenotypes within most tumors and limited association with outcomes. The utilization of an objective method to classify NSCLCs showed the existence of at least three subgroups with partial overlap with those defined using visual patterns. Using this strategy, a subset of cases with "immune excluded-like" tumors showed prominently worse outcomes, suggesting reduced sensitivity to ICI; however, these results need to be validated. The analysis for other TIL subsets showed different results, underscoring the relevance of the marker selected for spatial TIL pattern evaluation and opportunities for market integration. CONCLUSIONS:Our results identified major challenges associated with the qualitative spatial TIL pattern evaluation. We devised a novel objective strategy to overcome some of these limitations that has strong biomarker potential.
PMCID:10922461
PMID: 38127300
ISSN: 1557-3265
CID: 5691122
Adeno-to-squamous transition drives resistance to KRAS inhibition in LKB1 mutant lung cancer
Tong, Xinyuan; Patel, Ayushi S; Kim, Eejung; Li, Hongjun; Chen, Yueqing; Li, Shuai; Liu, Shengwu; Dilly, Julien; Kapner, Kevin S; Zhang, Ningxia; Xue, Yun; Hover, Laura; Mukhopadhyay, Suman; Sherman, Fiona; Myndzar, Khrystyna; Sahu, Priyanka; Gao, Yijun; Li, Fei; Li, Fuming; Fang, Zhaoyuan; Jin, Yujuan; Gao, Juntao; Shi, Minglei; Sinha, Satrajit; Chen, Luonan; Chen, Yang; Kheoh, Thian; Yang, Wenjing; Yanai, Itai; Moreira, Andre L; Velcheti, Vamsidhar; Neel, Benjamin G; Hu, Liang; Christensen, James G; Olson, Peter; Gao, Dong; Zhang, Michael Q; Aguirre, Andrew J; Wong, Kwok-Kin; Ji, Hongbin
KRASG12C inhibitors (adagrasib and sotorasib) have shown clinical promise in targeting KRASG12C-mutated lung cancers; however, most patients eventually develop resistance. In lung patients with adenocarcinoma with KRASG12C and STK11/LKB1 co-mutations, we find an enrichment of the squamous cell carcinoma gene signature in pre-treatment biopsies correlates with a poor response to adagrasib. Studies of Lkb1-deficient KRASG12C and KrasG12D lung cancer mouse models and organoids treated with KRAS inhibitors reveal tumors invoke a lineage plasticity program, adeno-to-squamous transition (AST), that enables resistance to KRAS inhibition. Transcriptomic and epigenomic analyses reveal ΔNp63 drives AST and modulates response to KRAS inhibition. We identify an intermediate high-plastic cell state marked by expression of an AST plasticity signature and Krt6a. Notably, expression of the AST plasticity signature and KRT6A at baseline correlates with poor adagrasib responses. These data indicate the role of AST in KRAS inhibitor resistance and provide predictive biomarkers for KRAS-targeted therapies in lung cancer.
PMID: 38402609
ISSN: 1878-3686
CID: 5691332
Characteristics of Long-Term Survivors With EGFR-Mutant Metastatic NSCLC
Tompkins, William; Grady, Connor B; Hwang, Wei-Ting; Chandrasekhara, Krishna; McCoach, Caroline; Sun, Fangdi; Liu, Geoffrey; Patel, Devalben; Nieva, Jorge; Herrmann, Amanda; Marrone, Kristen; Lam, Vincent K; Velcheti, Vamsi; Liu, Stephen V; Montenegro, Gabriela Liliana Bravo; Patil, Tejas; Weiss, Jared; Miller, Kelsey Leigh; Schwartzman, William; Dowell, Jonathan E; Shaverdashvili, Khvaramze; Villaruz, Liza; Cass, Amanda; Iams, Wade; Aisner, Dara; Aggarwal, Charu; Camidge, D Ross; Marmarelis, Melina E; Sun, Lova
INTRODUCTION/UNASSIGNED:Characteristics of long-term survivors in EGFR-mutant (EGFRm) NSCLC are not fully understood. This retrospective analysis evaluated a multi-institution cohort of patients with EGFRm NSCLC treated in the pre-osimertinib era and sought to describe characteristics of long-term survivors. METHODS/UNASSIGNED:Clinical characteristics and outcomes were abstracted from the electronic medical records of patients with EGFRm metastatic NSCLC who started first-line therapy before 2015. Demographics and comutations were compared between greater than or equal to 5-year survivors and less than 5-year survivors. Multivariable Cox proportional hazard and logistic regression models were used to evaluate factors associated with survival and the odds of death within 5 years, respectively. RESULTS/UNASSIGNED:< 0.001, respectively). CONCLUSIONS/UNASSIGNED:Within patients treated for EGFRm metastatic NSCLC before 2015, absence of brain metastasis and nonsmoking status were predictive of 5-year survival. Our findings help to define a subset of patients with EGFRm NSCLC with excellent survival outcomes who may not require intensification of initial therapy.
PMCID:11328087
PMID: 39157674
ISSN: 2666-3643
CID: 5680412