Searched for: in-biosketch:true
person:shauka01
Risk of colorectal cancer in patients with primary sclerosing cholangitis and concomitant inflammatory bowel disease compared with primary sclerosing cholangitis only
Das, Taranika Sarkar; Ho, Kimberly; Udaikumar, Jahnavi; Chen, Bryan; Delau, Olivia; Shaukat, Aasma; Jacobson, Ira; Sarwar, Raiya
AIM/OBJECTIVE:Primary sclerosing cholangitis (PSC) increases the risk of colorectal cancer (CRC) in inflammatory bowel disease (IBD) patients; however, there is a paucity of literature to suggest PSC alone as an independent risk factor for CRC. We aimed to determine if PSC is an independent risk factor for CRC in a large tertiary care medical center. Optimizing screening intervals is of great importance, given the burden and risks associated with a lifetime of colonoscopy screening. METHODS:This retrospective cohort study consists of patients diagnosed with PSC preceding IBD (PSC-IBD) and PSC-only before January 6, 2023 from a large, tertiary, academic medical center. Patients diagnosed with IBD concurrently or before PSC were excluded to reduce IBD's impact on CRC risk. Demographic data and colonoscopy findings were collected and assessed. RESULTS:Overall, 140 patients from all NYU Langone Health clinical settings were included. Patients with PSC-IBD were more likely to be diagnosed with CRC (23.3% vs. 1.8%, p < 0.01) and either low-grade or uncharacterized dysplasia (16.7% vs. 0.0%, p < 0.01) compared with those with PSC-only. Among PSC-only patients, the estimated CRC risk was significantly elevated compared with that expected of the standard NYU Langone population (SIR 9.2, 95% CI 1.1, 33.2). CONCLUSIONS:Our study revealed a significantly heightened CRC risk in PSC-IBD patients compared with those with PSC-only. Importantly, individuals with PSC-only also face a greater CRC risk compared with the general population. Individuals with PSC-alone may require extended screening and surveillance colonoscopy intervals compared with those with PSC-IBD, yet still require more frequent monitoring than screening guidelines recommend for the general population.
PMID: 38419394
ISSN: 1386-6346
CID: 5651302
Multi-level interventions to improve colorectal cancer screening in an urban Native American community: A pilot randomized clinical trial
Shaukat, Aasma; Wolf, Jack; Ryder, Kyle; Wisdom, Jennifer P; Church, Timothy R
PMID: 38365095
ISSN: 1542-7714
CID: 5636082
Large language models: a primer and gastroenterology applications
Shahab, Omer; El Kurdi, Bara; Shaukat, Aasma; Nadkarni, Girish; Soroush, Ali
Over the past year, the emergence of state-of-the-art large language models (LLMs) in tools like ChatGPT has ushered in a rapid acceleration in artificial intelligence (AI) innovation. These powerful AI models can generate tailored and high-quality text responses to instructions and questions without the need for labor-intensive task-specific training data or complex software engineering. As the technology continues to mature, LLMs hold immense potential for transforming clinical workflows, enhancing patient outcomes, improving medical education, and optimizing medical research. In this review, we provide a practical discussion of LLMs, tailored to gastroenterologists. We highlight the technical foundations of LLMs, emphasizing their key strengths and limitations as well as how to interact with them safely and effectively. We discuss some potential LLM use cases for clinical gastroenterology practice, education, and research. Finally, we review critical barriers to implementation and ongoing work to address these issues. This review aims to equip gastroenterologists with a foundational understanding of LLMs to facilitate a more active clinician role in the development and implementation of this rapidly emerging technology.
PMCID:10883116
PMID: 38390029
ISSN: 1756-283x
CID: 5634522
Effect of ginger supplementation on the fecal microbiome in subjects with prior colorectal adenoma
Prakash, Ajay; Rubin, Nathan; Staley, Christopher; Onyeaghala, Guillaume; Wen, Ya-Feng; Shaukat, Aasma; Milne, Ginger; Straka, Robert J; Church, Timothy R; Prizment, Anna
Ginger has been associated with a decreased incidence of colorectal cancer (CRC) through reduction in inflammatory pathways and inhibition of tumor growth. Recent pre-clinical models have implicated changes in the gut microbiome as a possible mediator of the ginger effect on CRC. We hypothesized that, in adults previously diagnosed with a colorectal adenoma, ginger supplementation would alter the fecal microbiome in the direction consistent with its CRC-inhibitory effect. Sixty-eight adults were randomized to take either ginger or placebo daily for 6 weeks, with a 6-week washout and longitudinal stool collection throughout. We performed 16S rRNA sequencing and evaluated changes in overall microbial diversity and the relative abundances of pre-specified CRC-associated taxa using mixed-effects logistic regression. Ginger supplementation showed no significant effect on microbial community structure through alpha or beta diversity. Of 10 pre-specified CRC-associated taxa, there were significant decreases in the relative abundances of the genera Akkermansia (p < 0.001), Bacteroides (p = 0.018), and Ruminococcus (p = 0.013) after 6-week treatment with ginger compared to placebo. Ginger supplementation led to decreased abundances of Akkermansia and Bacteroides, which suggests that ginger may have an inhibitory effect on CRC-associated taxa. Overall, ginger supplementation appears to have a limited effect on gut microbiome in patients with colorectal adenomas.
PMCID:10844320
PMID: 38316805
ISSN: 2045-2322
CID: 5632822
Establishment of Standards for the Referral of Large Non-Pedunculated Colorectal Polyps: An International Expert Consensus Using a Modified Delphi Process
Khalaf, Kareem; Seleq, Samir; Bourke, Michael J; Alkandari, Asma; Bapaye, Amol; Bechara, Robert; Calo, Natalia C; Fedorov, Evgeniy D; Hassan, Cesare; Kalauz, Mirjana; Kandel, Gabor P; Matsuda, Takahisa; May, Gary R; Mönkemüller, Klaus; Mosko, Jeffrey D; Ohno, Akiko; Pavic, Tajana; Pellisé, Maria; Raos, Zoe; Repici, Alessandro; Rex, Douglas K; Saxena, Payal; Schauer, Cameron; Sethi, Amrita; Sharma, Prateek; Shaukat, Aasma; Siddiqui, Uzma D; Singh, Rajvinder; Smith, Lesley-Ann; Tanabe, Mayo; Teshima, Christopher W; von Renteln, Daniel; Gimpaya, Nikko; Pawlak, Katarzyna M; Fujiyoshi, Mary Raina Angeli; Fujiyoshi, Yusuke; Lamba, Mehul; Li, Suqing; Malipatil, Sharan B; Grover, Samir C
BACKGROUND AND AIMS/OBJECTIVE:Resection of colorectal polyps has been shown to decrease the incidence and mortality of colorectal cancer. Large non-pedunculated colorectal polyps are often referred to expert centres for endoscopic resection, which requires relevant information to be conveyed to the therapeutic endoscopist to allow for triage and planning of resection technique. The primary objective of our study was to establish minimum expected standards for the referral of LNPCP for potential ER. METHODS:A Delphi methodology was employed to establish consensus on minimum expected standards for the referral of large colorectal polyps among a panel of international endoscopy experts. The expert panel was recruited through purposive sampling, and three rounds of surveys were conducted to achieve consensus, with quantitative and qualitative data analysed for each round. RESULTS:A total of 24 international experts from diverse continents participated in the Delphi study, resulting in consensus on 19 statements related to the referral of large colorectal polyps. The identified factors, including patient demographics, relevant medications, lesion factors, photodocumentation and the presence of a tattoo, were deemed important for conveying the necessary information to therapeutic endoscopists. The mean scores for the statements ranged from 7.04 to 9.29 out of 10, with high percentages of experts considering most statements as a very high priority. Subgroup analysis by continent revealed some variations in consensus rates among experts from different regions. CONCLUSION/CONCLUSIONS:The identified consensus statements can aid in improving the triage and planning of resection techniques for large colorectal polyps, ultimately contributing to the reduction of colorectal cancer incidence and mortality.
PMID: 38331224
ISSN: 1097-6779
CID: 5632432
Expert endoscopist assessment of colorectal polyp size using virtual scale endoscopy, visual or snare-based estimation: a prospective video-based study
Popescu Crainic, Ioana; Djinbachian, Roupen; Rex, Douglas K; Barkun, Alan; Shaukat, Aasma; East, James; Hassan, Cesare; Mori, Yuichi; Pohl, Heiko; Rastogi, Amit; Sharma, Prateek; Anderson, Joseph C; Taghiakbari, Mahsa; Medawar, Edgard; von Renteln, Daniel
BACKGROUND AND AIMS/UNASSIGNED:Accurate polyp size estimation during colonoscopy has an impact on clinical decision-making. A laser-based virtual scale endoscope (VSE) is available to allow measuring polyp size using a virtual adaptive scale. This study evaluates video-based polyp size measurement accuracy among expert endoscopists using either VSE or visual assessment (VA) with either snare as reference size or without any reference size information. METHODS/UNASSIGNED:A prospective, video-based study was conducted with 10 expert endoscopists. Video sequences from 90 polyps with known reference size (fresh specimen measured using calipers) were distributed on three different slide sets so that each slide set showed the same polyp only once with either VSE, VA or snare-based information. A slide set was randomly assigned to each endoscopist. Endoscopists were asked to provide size estimation based on video review. RESULTS/UNASSIGNED: = 0.038). CONCLUSIONS/UNASSIGNED:Endoscopists estimate polyp size with the highest accuracy when virtual adaptive scale information is displayed. Using a snare to assist sizing did not improve measurement accuracy compared to displaying visual information alone.
PMID: 38333956
ISSN: 1502-7708
CID: 5631952
Early Detection of Advanced Adenomas and Colorectal Carcinoma by Serum Glycoproteome Profiling
Desai, Khushbu; Gupta, Samir; May, Folasade P; Xu, Gege; Shaukat, Aasma; Hommes, Daniel W; ,
PMID: 37769953
ISSN: 1528-0012
CID: 5620482
Colon polyps: updates in classification and management
Dornblaser, David; Young, Sigird; Shaukat, Aasma
PURPOSE OF REVIEW/OBJECTIVE:Colon polyps are potential precursors to colorectal cancer (CRC), which remains one of the most common causes of cancer-associated death. The proper identification and management of these colorectal polyps is an important quality measure for colonoscopy outcomes. Here, we review colon polyp epidemiology, their natural history, and updates in endoscopic classification and management. RECENT FINDINGS/RESULTS:Colon polyps that form from not only the adenoma, but also the serrated polyp pathway have significant risk for future progression to CRC. Therefore, correct identification and management of sessile serrated lesions can improve the quality of screening colonoscopy. Malignant polyp recognition continues to be heavily reliant on well established endoscopic classification systems and plays an important role in intraprocedural management decisions. Hot snare remains the gold standard for pedunculated polyp resection. Nonpedunculated noninvasive lesions can be effectively removed by large forceps if diminutive, but cold snare is preferred for colon polyps 3-20 mm in diameter. Larger lesions at least 20 mm require endoscopic mucosal resection. Polyps with the endoscopic appearance of submucosal invasion require surgical referral or advanced endoscopic resection in select cases. Advances in artificial intelligence may revolutionize endoscopic polyp classification and improve both patient and cost-related outcomes of colonoscopy. SUMMARY/CONCLUSIONS:Clinicians should be aware of the most recent updates in colon polyp classification and management to provide the best care to their patients initiating screening colonoscopy.
PMID: 37909928
ISSN: 1531-7056
CID: 5612732
Comparison of Artificial Intelligence With Other Interventions to Improve Adenoma Detection Rate for Colonoscopy: A Network Meta-analysis
Aziz, Muhammad; Haghbin, Hossein; Sayeh, Wasef; Alfatlawi, Halah; Gangwani, Manesh K; Sohail, Amir H; Zahdeh, Tamer; Weissman, Simcha; Kamal, Faisal; Lee-Smith, Wade; Nawras, Ali; Sharma, Prateek; Shaukat, Aasma
INTRODUCTION/BACKGROUND:Recent randomized controlled trials (RCTs) and meta-analysis have demonstrated improved adenoma detection rate (ADR) for colonoscopy with artificial intelligence (AI) compared with high-definition (HD) colonoscopy without AI. We aimed to perform a systematic review and network meta-analysis of all RCTs to assess the impact of AI compared with other endoscopic interventions aimed at increasing ADR such as distal attachment devices, dye-based/virtual chromoendoscopy, water-based techniques, and balloon-assisted devices. METHODS:A comprehensive literature search of PubMed/Medline, Embase, and Cochrane was performed through May 6, 2022, to include RCTs comparing ADR for any endoscopic intervention mentioned above. Network meta-analysis was conducted using a frequentist approach and random effects model. Relative risk (RR) and 95% CI were calculated for proportional outcome. RESULTS:A total of 94 RCTs with 61,172 patients (mean age 59.1±5.2 y, females 45.8%) and 20 discrete study interventions were included. Network meta-analysis demonstrated significantly improved ADR for AI compared with autofluorescence imaging (RR: 1.33, CI: 1.06 to 1.66), dye-based chromoendoscopy (RR: 1.22, CI: 1.06 to 1.40), endocap (RR: 1.32, CI: 1.17 to 1.50), endocuff (RR: 1.19, CI: 1.04 to 1.35), endocuff vision (RR: 1.26, CI: 1.13 to 1.41), endoring (RR: 1.30, CI: 1.10 to 1.52), flexible spectral imaging color enhancement (RR: 1.26, CI: 1.09 to 1.46), full-spectrum endoscopy (RR: 1.40, CI: 1.19 to 1.65), HD (RR: 1.41, CI: 1.28 to 1.54), linked color imaging (RR: 1.21, CI: 1.08 to 1.36), narrow band imaging (RR: 1.33, CI: 1.18 to 1.48), water exchange (RR: 1.22, CI: 1.06 to 1.42), and water immersion (RR: 1.47, CI: 1.19 to 1.82). CONCLUSIONS:AI demonstrated significantly improved ADR when compared with most endoscopic interventions. Future RCTs directly assessing these associations are encouraged.
PMID: 36441163
ISSN: 1539-2031
CID: 5383492
Does Screening Colonoscopy Have a Future in the United States?
Rex, Douglas K; Ladabaum, Uri; Anderson, Joseph C; Shaukat, Aasma; Butterly, Lynn F; Dominitz, Jason A; Kaltenbach, Tonya; Levin, Theodore R; Hassan, Cesare
PMID: 37536529
ISSN: 1542-7714
CID: 5708182