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Metabolically driven maturation of human-induced-pluripotent-stem-cell-derived cardiac microtissues on microfluidic chips
Huebsch, Nathaniel; Charrez, Berenice; Neiman, Gabriel; Siemons, Brian; Boggess, Steven C; Wall, Samuel; Charwat, Verena; Jæger, Karoline H; Cleres, David; Telle, Åshild; Lee-Montiel, Felipe T; Jeffreys, Nicholas C; Deveshwar, Nikhil; Edwards, Andrew G; Serrano, Jonathan; Snuderl, Matija; Stahl, Andreas; Tveito, Aslak; Miller, Evan W; Healy, Kevin E
The immature physiology of cardiomyocytes derived from human induced pluripotent stem cells (hiPSCs) limits their utility for drug screening and disease modelling. Here we show that suitable combinations of mechanical stimuli and metabolic cues can enhance the maturation of hiPSC-derived cardiomyocytes, and that the maturation-inducing cues have phenotype-dependent effects on the cells' action-potential morphology and calcium handling. By using microfluidic chips that enhanced the alignment and extracellular-matrix production of cardiac microtissues derived from genetically distinct sources of hiPSC-derived cardiomyocytes, we identified fatty-acid-enriched maturation media that improved the cells' mitochondrial structure and calcium handling, and observed divergent cell-source-dependent effects on action-potential duration (APD). Specifically, in the presence of maturation media, tissues with abnormally prolonged APDs exhibited shorter APDs, and tissues with aberrantly short APDs displayed prolonged APDs. Regardless of cell source, tissue maturation reduced variabilities in spontaneous beat rate and in APD, and led to converging cell phenotypes (with APDs within the 300-450 ms range characteristic of human left ventricular cardiomyocytes) that improved the modelling of the effects of pro-arrhythmic drugs on cardiac tissue.
PMID: 35478228
ISSN: 2157-846x
CID: 5205692
A pilot study of genomic-guided induction therapy followed by immunotherapy with difluoromethylornithine maintenance for high-risk neuroblastoma
Kraveka, Jacqueline M; Lewis, Elizabeth C; Bergendahl, Genevieve; Ferguson, William; Oesterheld, Javier; Kim, Elizabeth; Nagulapally, Abhinav B; Dykema, Karl J; Brown, Valerie I; Roberts, William D; Mitchell, Deanna; Eslin, Don; Hanson, Derek; Isakoff, Michael S; Wada, Randal K; Harrod, Virginia L; Rawwas, Jawhar; Hanna, Gina; Hendricks, William P D; Byron, Sara A; Snuderl, Matija; Serrano, Jonathan; Trent, Jeffrey M; Saulnier Sholler, Giselle L
BACKGROUND:Survival for patients with high-risk neuroblastoma (HRNB) remains poor despite aggressive multimodal therapies. AIMS/OBJECTIVE:To study the feasibility and safety of incorporating a genomic-based targeted agent to induction therapy for HRNB as well as the feasibility and safety of adding difluoromethylornithine (DFMO) to anti-GD2 immunotherapy. METHODS:twice daily) was added to maintenance with dinutuximab and isotretinoin, followed by continuation of DFMO alone for 2 years. DNA methylation analysis was performed retrospectively and compared to RNA expression. RESULTS:Of the 20 subjects enrolled, 19 started targeted therapy during cycle 3 and 1 started during cycle 5. Eighty-five percent of subjects met feasibility criteria (receiving 75% of targeted agent doses). Addition of targeted agents did not result in toxicities requiring dose reduction of chemotherapy or permanent discontinuation of targeted agent. Following standard consolidation, 15 subjects continued onto immunotherapy with DFMO. This combination was well-tolerated and resulted in no unexpected adverse events related to DFMO. CONCLUSION/CONCLUSIONS:This study demonstrates the safety and feasibility of adding targeted agents to standard induction therapy and adding DFMO to immunotherapy for HRNB. This treatment regimen has been expanded to a Phase II trial to evaluate efficacy.
PMID: 35355452
ISSN: 2573-8348
CID: 5201252
Blinded Review of Hippocampal Neuropathology in Sudden Unexplained Death in Childhood Reveals Inconsistent Observations and Similarities to Explained Pediatric Deaths
Leitner, Dominique F; McGuone, Declan; William, Christopher; Faustin, Arline; Askenazi, Manor; Snuderl, Matija; Guzzetta, Melissa; Jarrell, Heather S; Maloney, Katherine; Reichard, Ross; Smith, Colin; Weedn, Victor; Wisniewski, Thomas; Gould, Laura; Devinsky, Orrin
AIMS/OBJECTIVE:Hippocampal findings are implicated in the pathogenesis of sudden unexplained death in childhood (SUDC), although some studies have identified similar findings in sudden explained death in childhood (SEDC) cases. We blindly reviewed hippocampal histology in SUDC and SEDC controls. METHODS:Hippocampal H&E slides (n=67; 36 SUDC, 31 controls) from clinical and forensic collaborators were evaluated by 9 blinded reviewers: 3 board-certified forensic pathologists, 3 neuropathologists, and 3 dual-certified neuropathologist/forensic pathologists. RESULTS:Among nine reviewers, about 50% of hippocampal sections were rated as abnormal (SUDC 52.5%, controls 53.0%), with no difference by cause of death (COD) (p=0.16) or febrile seizure history (p=0.90). There was little agreement among nine reviewers on whether a slide was within normal range (Fleiss' kappa=0.014, p=0.47). Within reviewer groups, there were no findings more frequent in SUDC compared to controls, with variability in pyramidal neuron and dentate gyrus findings. Across reviewer groups, there was concordance for bilamination and granule cell loss. Neither SUDC (51.2%) nor control (55.9%) slides were considered contributory to determining COD (p=0.41). CONCLUSIONS:The lack of an association of hippocampal findings in SUDC and controls, as well as inconsistency of observations by multiple blinded reviewers, indicates discrepancy with previous studies and an inability to reliably identify hippocampal malformation associated with sudden death (HMASD). These findings underscore a need for larger studies to standardize evaluation of hippocampal findings, identify the range of normal variation and, changes unrelated to SUDC or febrile seizures. Molecular studies may help identify novel immunohistological markers that inform on COD.
PMID: 34164845
ISSN: 1365-2990
CID: 4918622
Absence of residual tumor tissue after Gamma Knife radiosurgery followed by resection of a vestibular schwannoma: illustrative case
Berger, Assaf; Galbraith, Kristyn; Snuderl, Matija; Golfinos, John G; Kondziolka, Douglas
BACKGROUND:Late pathology after vestibular schwannoma radiosurgery is uncommon. The authors presented a case of a resected hemorrhagic mass 13 years after radiosurgery, when no residual tumor was found. OBSERVATIONS/METHODS:A 56-year-old man with multiple comorbidities, including myelodysplastic syndrome cirrhosis, received Gamma Knife surgery for a left vestibular schwannoma. After 11 years of stable imaging assessments, the lesion showed gradual growth until a syncopal event occurred 2 years later, accompanied by progressive facial weakness and evidence of intralesional hemorrhage, which led to resection. However, histopathological analysis of the resected specimen showed hemorrhage and reactive tissue but no definitive residual tumor. LESSONS/CONCLUSIONS:This case demonstrated histopathological evidence for the role of radiosurgery in complete elimination of tumor tissue. Radiosurgery for vestibular schwannoma carries a rare risk for intralesional hemorrhage in select patients.
PMID: 36130577
ISSN: 2694-1902
CID: 5335422
IDH-mutant astrocytoma with EGFR amplification-Genomic profiling in four cases and review of literature
Umphlett, Melissa; Bilal, Khawaja Hasan; Martini, Michael L; Suwala, Abigail K; Ahuja, Sadhna; Rashidipour, Omid; Germano, Isabelle; Snuderl, Matija; Morgenstern, Peter; Tsankova, Nadejda M
PMCID:9159664
PMID: 35669011
ISSN: 2632-2498
CID: 5283082
TSC2-mutant uterine sarcomas with JAZF1-SUZ12 fusions demonstrate hybrid features of endometrial stromal sarcoma and PEComa and are responsive to mTOR inhibition
Chiang, Sarah; Vasudevaraja, Varshini; Serrano, Jonathan; Stewart, Colin J R; Oliva, Esther; Momeni-Boroujeni, Amir; Jungbluth, Achim A; Da Cruz Paula, Arnaud; da Silva, Edaise M; Weigelt, Britta; Park, Kay J; Soslow, Robert A; Murali, Rajmohan; Ellenson, Lora H; Benayed, Ryma; Ladanyi, Marc; Abu-Rustum, Nadeem R; Dickson, Mark A; Cohen, Seth; Aghajanian, Carol; Hensley, Martee L; Lee, Cheng-Han; Snuderl, Matija; Konner, Jason A
Uterine perivascular epithelioid cell tumor (PEComa) is a rare mesenchymal neoplasm that occasionally shares morphologic and immunohistochemical overlap with low- and high-grade endometrial stromal sarcoma (LGESS and HGESS). In this study, we sought to characterize the clinical, morphologic, genetic, and epigenetic features of five uterine sarcomas that display histologic features of LGESS, HGESS, and PEComa. All tumors demonstrated epithelioid cells often associated with a low-grade spindled component resembling LGESS, with both regions expressing CD10, ER, PR, variable HMB45, and Melan-A immunoreactivity, and strong cathepsin K and pS6 expression. Targeted massively parallel sequencing analysis revealed the presence of somatic TSC2 mutations in all five cases, of which four harbored concurrent or consecutive JAZF1-SUZ12 gene fusions. Unsupervised hierarchical clustering analysis of methylation profiles of TSC2-mutant uterine sarcomas (n = 4), LGESS (n = 10), and HGESS (n = 12) demonstrated two clusters consisting of (1) all LGESS and TSC2-mutant uterine sarcomas and (2) all HGESS. KEGG pathway analysis detected methylation differences in genes involved in PI3K/AKT, calcium, and Rap1 signaling. TSC2-mutant uterine sarcomas were responsive to hormone suppression, and mTOR inhibition demonstrated clinical benefit in four patients with these neoplasms. Our results suggest that these tumors represent histologically distinctive LGESS with TSC2 mutations. TSC2 mutations and JAZF1-SUZ12 fusion may help diagnose these tumors and possibly direct effective treatment.
PMID: 34561551
ISSN: 1530-0285
CID: 5067362
Utility of multimodality molecular profiling for pediatric patients with central nervous system tumors
Rajappa, Prajwal; Eng, Kenneth W; Bareja, Rohan; Bander, Evan D; Yuan, Melissa; Dua, Alisha; Bhanu Maachani, Uday; Snuderl, Matija; Pan, Heng; Zhang, Tuo; Tosi, Umberto; Ivasyk, Iryna; Souweidane, Mark M; Elemento, Olivier; Sboner, Andreas; Greenfield, Jeffrey P; Pisapia, David J
Background/UNASSIGNED:As our molecular understanding of pediatric central nervous system (CNS) tumors evolves, so too do diagnostic criteria, prognostic biomarkers, and clinical management decision making algorithms. Here, we explore the clinical utility of wide-breadth assays, including whole-exome sequencing (WES), RNA sequencing (RNA-seq), and methylation array profiling as an addition to more conventional diagnostic tools for pediatric CNS tumors. Methods/UNASSIGNED:This study comprises an observational, prospective cohort followed at a single academic medical center over 3 years. Paired tumor and normal control specimens from 53 enrolled pediatric patients with CNS tumors underwent WES. A subset of cases also underwent RNA-seq (n = 28) and/or methylation array analysis (n = 27). Results/UNASSIGNED:fusions, and uncovered possible rationalized treatment options based on outlier gene expression in 23/28 cases. Methylation profiling added diagnostic confidence (8/27 cases) or diagnostic subclassification endorsed by the WHO (10/27 cases). WES detected clinically pertinent tier 1 or tier 2 variants in 36/53 patients. Of these, 16/17 SNVs/INDELs and 10/19 copy number alterations would have been detected by current in-house conventional tests including targeted sequencing panels. Conclusions/UNASSIGNED:Over a heterogeneous set of pediatric tumors, RNA-seq and methylation profiling frequently yielded clinically relevant information orthogonal to conventional methods while WES demonstrated clinically relevant added value primarily via copy number assessment. Longitudinal cohorts comparing targeted molecular pathology workup vs broader genomic approaches including therapeutic selection based on RNA expression data will be necessary to further evaluate the clinical benefits of these modalities in practice.
PMCID:9034114
PMID: 35475276
ISSN: 2632-2498
CID: 5217442
Detection of gene fusions, cryptic rearrangements, and gene regulatory interactions in brain tumors by whole-genome Hi-C [Meeting Abstract]
Galbraith, Kristyn; Yang, Yiying; Mohamed, Hussein; Movahed-Ezazi, Misha; Tran, Ivy; Zeck, Briana; Chiriboga, Luis; Sikkink, Kristin; Schmitt, Anthony; Tsirigos, Aristotelis; Jour, George; Snuderl, Matija
ISI:000798368400105
ISSN: 0022-3069
CID: 5525632
DNA damage drives DNA methylation and 3D chromatin organization alterations in glioblastoma [Meeting Abstract]
Modrek, Aram S.; Do, Catherine; Zhang, Zeyan; Deng, Yingwen; Karp, Jerome; Ezhilarasan, Ravesanker; Cova, Giulia; Snuderl, Matija; Tsirigos, Aristotelis; Skok, Jane; Sulman, Erik P.
ISI:000892509507561
ISSN: 0008-5472
CID: 5526672
Clinical Validation of Stimulated Raman Histology for Rapid Intraoperative Diagnosis of CNS Tumors [Meeting Abstract]
Movahed-Ezazi, Misha; Nasir-moin, Mustafa; Fang, Camila; Pizzillo, Isabella; Galbraith, Kristyn; Krasnozhen, Olga; Schroff, Seema; Drexler, Steven; William, Christopher; Zagzag, David; Orringer, Daniel; Snuderl, Matija
ISI:000798368400131
ISSN: 0022-3069
CID: 5244332