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141


BAP1 Loss in Triple Negative Breast Cancer [Meeting Abstract]

Vougiouklakis, Theodore; Schwartz, Christopher; Cotzia, Paolo; Snuderl, Matija; Jour, George; Darvishian, Farbod
ISI:000478915500274
ISSN: 0893-3952
CID: 4048062

Predicting BRAF and NRAS Mutations Using Deep Learning on Histopathology Images of Melanoma [Meeting Abstract]

Kim, Randie; Nomikou, Sofia; Dawood, Zarmeena; Coudray, Nicolas; Jour, George; Moran, Una; Razavian, Narges; Osman, Iman; Tsirigos, Aristotelis
ISI:000478915500468
ISSN: 0893-3952
CID: 4048102

Chromatin Remodeling and DNA Repair in Intrahepatic Cholangiocarcinoma: A Possible Driver of Tumorigenesis [Meeting Abstract]

Black, Margaret; Jour, George; Snuderl, Matija
ISI:000478915501289
ISSN: 0893-3952
CID: 4048142

Epigenetic Regulation of Tumor Microenvironment in Spindle cell/Desmoplastic Melanomas (SDM) and Cutaneous Malignant Peripheral Nerve Sheath Tumors (c-MPNST): the hidden role of gene body enhancers [Meeting Abstract]

Phyu Aung; Vasudevaraja, Varshini; Prieto, Victor; Torres-Cabala, Carlos; Snuderl, Matija; Jour, George
ISI:000478915501419
ISSN: 0893-3952
CID: 4048162

Multifocal Breast Cancer: A Clonality Study Using Whole Exome Sequencing [Meeting Abstract]

Schwartz, Christopher; Dolgalev, Igor; Heguy, Adriana; Snuderl, Matija; Jour, George; Darvishian, Farbod
ISI:000478081100253
ISSN: 0023-6837
CID: 4048322

Predicting BRAF and NRAS Mutations Using Deep Learning on Histopathology Images of Melanoma [Meeting Abstract]

Kim, Randie; Nomikou, Sofia; Dawood, Zarmeena; Coudray, Nicolas; Jour, George; Moran, Una; Razavian, Narges; Osman, Iman; Tsirigos, Aristotelis
ISI:000478081100486
ISSN: 0023-6837
CID: 4048332

Long Noncoding RNAs (LncRNAs) Signatures in Prostate Cancer: External Validation with The Cancer Genome Atlas (TCGA) database [Meeting Abstract]

Parimi (Parini), Vamsi; Vasudevaraja, Varshini; Xia, Yuhe; Selvaraj, Shanmugapriya; Mezzano, Valeria; Jour, George; Snuderl, Matija; Tsirigos, Aristotelis; Deng, Fangming; Melamed, Jonathan
ISI:000478081101390
ISSN: 0023-6837
CID: 4048392

Comparative Study of Lower Limit of Detection of EGFRvIII Variant Detection Using Amplicon-Based NGS Testing and RT-PCR [Meeting Abstract]

Shen, G.; Vougiouklakis, T.; Snuderl, M.; Cotzia, P.; Park, K.; Jour, G.; Feng, X.
ISI:000496996500419
ISSN: 1525-1578
CID: 4222302

Dermal xanthomatous infiltrates after brentuximab vedotin therapy in mycosis fungoides with large cell transformation: a novel histologic finding [Case Report]

Buchely, Natalia; Al-Rohil, Rami; Aung, Phyu P; Jour, George; Torres-Cabala, Carlos; Prieto, Victor G; Ivan, Doina
Mycosis fungoides (MF) is the most common variant of cutaneous T-cell lymphomas (CTCL). Large cell transformation of MF has been associated with disease progression and overall poor outcome. The expression of CD30, which defines anaplastic large cell lymphoma (ALCL) and lymphomatoid papulosis (LyP), might also occur in a subset of patients with MF, with or without large cell transformation. Brentuximab vedotin is an anti-CD30 monoclonal antibody which has been proven to be a safe and effective therapeutic agent in the treatment of CD30-positive lymphomas, such as Hodgkin lymphoma and ALCL. Recently, brentuximab vedotin has been shown to have a significant clinical activity in treatment-refractory or advanced MF or Sezary syndrome (SS) with a wide-range of CD30 expression levels. We report a patient with MF tumor stage with large cell transformation and low CD30 expression with good response to brentuximab vedotin and unusual extensive xanthomatous changes in the follow-up biopsy.
PMID: 29806104
ISSN: 1600-0560
CID: 3135922

Novel enriched pathways in superficial malignant peripheral nerve sheath tumours and spindle/desmoplastic melanomas

Jour, George; Andeen, Nicole K; Al-Rohil, Rami; Aung, Phyu P; Mehrotra, Meenakshi; Duose, Dzifa; Hoch, Benjamin; Argenyi, Zolt; Luthra, Rajyalakshmi; Wistuba, Ignacio I; Prieto, Victor G
Superficial malignant peripheral nerve sheath tumour (MPNST) is a rare, soft tissue neoplasm that shares morphological features and some molecular events with spindle/desmoplastic melanoma (SDM). Herein, we sought to identify molecular targets for therapy by using targeted RNA/DNA sequencing and gene expression of key immunological players. DNA and RNA from formalin-fixed paraffin-embedded tissue were extracted and processed. Massive high-throughput deep parallel sequencing was performed with the Oncomine comprehensive panel, enabling detection of relevant single-nucleotide variants, copy number variations, gene fusions and indels for 143 unique genes on the Ion torrent sequencer for clinical trial research programmes. Gene expression analysis was carried out with a customized 770-gene expression panel combining markers for 24 different immune cell types and 30 common cancer antigens, including key checkpoint blockade genes analysed with the Ncounter system. Fifty-one patients (SDM, 16/11; MPNST, 24; male, n = 37; female, n = 16) had sufficient DNA and RNA for testing. NF1 deleterious mutations and/or deep/homozygous deletions were identified in 73% of MPNSTs and 67% of SDMs, with 50% of the mutations involving the RAS-binding domain. Inactivating/deleterious mutations of TSC1/TSC2 were identified in 40% and 41% of MPNSTs and SDMs, respectively. Activating mutations affecting the EGFR-like and the negative regulatory domains of NOTCH1 and KDR (VEGFR2) were identified in 45% and 40% of SDMs and in 30% and 8% of MPNSTs, respectively. Differential gene expression and gene clustering analysis showed significantly perturbed immune pathway components, including nuclear factor-κB (NF-κB), JAK-STAT, and CXCL12-CXCR4, and differentially expressed CD274 and CTLA4, in both SDM and MPNST. Angiogenesis (KDR and NOTCH1) and mammalian target of rapamycin complex (mTORC) pathways offer a rationale for anti-angiogenic and selective mTORC inhibition as treatment strategies for MPNST and SDM. Cytokines and the JAK-STAT, TNF and NF-κB axes were perturbed in both SDM and MPNST. These pathways have been targeted in haematological malignancies and present promising targets for these tumours.
PMID: 28991373
ISSN: 1096-9896
CID: 2835512