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Methylation Profiling of Papillary Renal Neoplasm with Reverse Polarity [Meeting Abstract]
Park, Kyung; Serrano, Jonathan; Tran, Ivy; Feng, Xiaojun; Chen, Fei; Vasudevaraja, Varshini; Mirsadraei, Leili; Snuderl, Matija; Deng, Fang-Ming
ISI:000770361801237
ISSN: 0893-3952
CID: 5208642
Detection of gene fusions, cryptic rearrangements, and gene regulatory interactions in brain tumors by whole-genome Hi-C [Meeting Abstract]
Galbraith, Kristyn; Yang, Yiying; Mohamed, Hussein; Movahed-Ezazi, Misha; Tran, Ivy; Zeck, Briana; Chiriboga, Luis; Sikkink, Kristin; Schmitt, Anthony; Tsirigos, Aristotelis; Jour, George; Snuderl, Matija
ISI:000798368400105
ISSN: 0022-3069
CID: 5525632
Tubulopapillary Carcinoma of the Breast: A Distinct Morphologic Entity with Molecular and Immunohistochemical Analysis [Meeting Abstract]
Salama, Abeer; Schwartz, Christopher; Zhu, Kelsey; Vasudevaraja, Varshini; Serrano, Jonathan; Jour, George; Park, Kyung; Snuderl, Matija; Cotzia, Paolo; Darvishian, Farbod
ISI:000770360200172
ISSN: 0023-6837
CID: 5243152
Clinical value of DNA methylation in practice: A prospective molecular neuropathology study [Meeting Abstract]
Galbraith, Kristyn; Shen, Guomiao; Serrano, Jonathan; Vasudevaraja, Varshini; Tran, Ivy; Movahed-Ezazi, Misha; Harter, David; Hidalgo, Eveline; Wisoff, Jeffrey; Orringer, Daniel; Placantonakis, Dimitris; Gardner, Sharon; William, Christopher; Zagzag, David; Allen, Jeffrey; Sulman, Erik; Golfinos, John; Snuderl, Matija
ISI:000798368400125
ISSN: 0022-3069
CID: 5244322
Ethnic distribution of molecularly classified brain tumors [Meeting Abstract]
Fang, Camila; Tran, Ivy; Vasudevaraja, Varshini; Serrano, Jonathan; Pizzillo, Isabella; Zhu, Kelsey; Movahed-Ezazi, Misha; Gao, Chengzhuo; Galbraith, Kristyn; Snuderl, Matija
ISI:000798368400188
ISSN: 0022-3069
CID: 5244362
ADAPTIVE RESPONSES TO GENOME-WIDE DNA DAMAGE RESULT IN TOPOLOGIC GENOME REORGANIZATION IN GLIOBLASTOMA [Meeting Abstract]
Modrek, Aram; Do, Catherine; Zhang, Zeyan; Deng, Yingwen; Karp, Jerome; Ezhilarasan, Ravesanker; Valor, Belen; Cova, Giulia; Jafari, Matiar; Snuderl, Matija; Tsirigos, Aristotelis; Skok, Jane; Sulman, Erik
ISI:000888571000458
ISSN: 1522-8517
CID: 5526662
Mutational Landscape of Intracranial NF2 and Non-NF2 Driven Schwannomas [Meeting Abstract]
Belakhoua, Sarra; Galbraith, Kristyn; Tran, Ivy; Zhu, Kelsey; Golfinos, John; Snuderl, Matija
ISI:000798368400123
ISSN: 0022-3069
CID: 5244312
DNA damage drives DNA methylation and 3D chromatin organization alterations in glioblastoma [Meeting Abstract]
Modrek, Aram S.; Do, Catherine; Zhang, Zeyan; Deng, Yingwen; Karp, Jerome; Ezhilarasan, Ravesanker; Cova, Giulia; Snuderl, Matija; Tsirigos, Aristotelis; Skok, Jane; Sulman, Erik P.
ISI:000892509507561
ISSN: 0008-5472
CID: 5526672
Metabolic-imaging of human glioblastoma live tumors: A new precision-medicine approach to predict tumor treatment response early
Morelli, Mariangela; Lessi, Francesca; Barachini, Serena; Liotti, Romano; Montemurro, Nicola; Perrini, Paolo; Santonocito, Orazio Santo; Gambacciani, Carlo; Snuderl, Matija; Pieri, Francesco; Aquila, Filippo; Farnesi, Azzurra; Naccarato, Antonio Giuseppe; Viacava, Paolo; Cardarelli, Francesco; Ferri, Gianmarco; Mulholland, Paul; Ottaviani, Diego; Paiar, Fabiola; Liberti, Gaetano; Pasqualetti, Francesco; Menicagli, Michele; Aretini, Paolo; Signore, Giovanni; Franceschi, Sara; Mazzanti, Chiara Maria
Background/UNASSIGNED:Glioblastoma (GB) is the most severe form of brain cancer, with a 12-15 month median survival. Surgical resection, temozolomide (TMZ) treatment, and radiotherapy remain the primary therapeutic options for GB, and no new therapies have been introduced in recent years. This therapeutic standstill is primarily due to preclinical approaches that do not fully respect the complexity of GB cell biology and fail to test efficiently anti-cancer treatments. Therefore, better treatment screening approaches are needed. In this study, we have developed a novel functional precision medicine approach to test the response to anticancer treatments in organoids derived from the resected tumors of glioblastoma patients. Methods/UNASSIGNED:GB organoids were grown for a short period of time to prevent any genetic and morphological evolution and divergence from the tumor of origin. We chose metabolic imaging by NAD(P)H fluorescence lifetime imaging microscopy (FLIM) to predict early and non-invasively ex-vivo anti-cancer treatment responses of GB organoids. TMZ was used as the benchmark drug to validate the approach. Whole-transcriptome and whole-exome analyses were performed to characterize tumor cases stratification. Results/UNASSIGNED:Our functional precision medicine approach was completed within one week after surgery and two groups of TMZ Responder and Non-Responder tumors were identified. FLIM-based metabolic tumor stratification was well reflected at the molecular level, confirming the validity of our approach, highlighting also new target genes associated with TMZ treatment and identifying a new 17-gene molecular signature associated with survival. The number of MGMT gene promoter methylated tumors was higher in the responsive group, as expected, however, some non-methylated tumor cases turned out to be nevertheless responsive to TMZ, suggesting that our procedure could be synergistic with the classical MGMT methylation biomarker. Conclusions/UNASSIGNED:For the first time, FLIM-based metabolic imaging was used on live glioblastoma organoids. Unlike other approaches, ex-vivo patient-tailored drug response is performed at an early stage of tumor culturing with no animal involvement and with minimal tampering with the original tumor cytoarchitecture. This functional precision medicine approach can be exploited in a range of clinical and laboratory settings to improve the clinical management of GB patients and implemented on other cancers as well.
PMCID:9483168
PMID: 36132155
ISSN: 2234-943x
CID: 5335482
A Comparison of the Classification of Pituitary Adenomas by Clinical, Immunohistochemical and Methylation Techniques [Meeting Abstract]
Belakhoua, Sarra; Tran, Ivy; Galbraith, Kristyn; Movahed-Ezazi, Misha; Serrano, Jonathan; Vasudevaraja, Varshini; Yang, Yiying; Golfinos, John; Pacione, Donato; Agrawal, Nidhi; Snuderl, Matija
ISI:000798368400184
ISSN: 0022-3069
CID: 5244342