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Assessing aneuploidy with repetitive element sequencing

Douville, Christopher; Cohen, Joshua D; Ptak, Janine; Popoli, Maria; Schaefer, Joy; Silliman, Natalie; Dobbyn, Lisa; Schoen, Robert E; Tie, Jeanne; Gibbs, Peter; Goggins, Michael; Wolfgang, Christopher L; Wang, Tian-Li; Shih, Ie-Ming; Karchin, Rachel; Lennon, Anne Marie; Hruban, Ralph H; Tomasetti, Cristian; Bettegowda, Chetan; Kinzler, Kenneth W; Papadopoulos, Nickolas; Vogelstein, Bert
We report a sensitive PCR-based assay called Repetitive Element AneupLoidy Sequencing System (RealSeqS) that can detect aneuploidy in samples containing as little as 3 pg of DNA. Using a single primer pair, we amplified ∼350,000 amplicons distributed throughout the genome. Aneuploidy was detected in 49% of liquid biopsies from a total of 883 nonmetastatic, clinically detected cancers of the colorectum, esophagus, liver, lung, ovary, pancreas, breast, or stomach. Combining aneuploidy with somatic mutation detection and eight standard protein biomarkers yielded a median sensitivity of 80% in these eight cancer types, while only 1% of 812 healthy controls scored positive.
PMCID:7060727
PMID: 32075918
ISSN: 1091-6490
CID: 4741462

The impact of high body mass index on patients undergoing robotic pancreatectomy: A propensity matched analysis

He, Shengliang; Ding, Ding; Wright, Michael J; Groshek, Lara; Javed, Ammar A; Ka-Wan Chu, Kevin; Burkhart, Richard A; Cameron, John L; Weiss, Matthew J; Wolfgang, Christopher L; He, Jin
BACKGROUND:Patients with high body mass index are associated with a higher risk of complications after open pancreatectomy. We aimed to investigate the perioperative outcome for patients with high body mass index after robotic pancreatectomy. METHODS:This is a retrospective, propensity-score matched cohort analysis. From our prospectively maintained database, we identified consecutive patients with body mass index >25 who underwent robotic pancreatectomy between January 2016 and December 2018. Propensity score matching with open pancreatectomy was applied in 1:2 fashion based on age, gender, American Society of Anesthesiologists classification, surgery type, histology, neoadjuvant therapy, and body mass index during the same study period. RESULTS:A total of 127 patients were included. The mean age for all patients was 61.7 ± 12.8 years and 65 (51.2%) were male. Median body mass index was 29.9 (interquartile range, 27.0-31.8) for both groups. Propensity score matching provided equally distributed general demographic and clinicopathological factors. Robotic pancreatectomy was associated with decreased blood loss (100 mL vs 300 mL, P < .001) and shorter hospital stay (7 vs 9 days, P = .019). CONCLUSION:Robotic pancreatectomy is associated with decreased blood loss and shorter length of hospital stay in overweight patients. Robotic approach may help alleviate morbidity in overweight patients undergoing pancreatectomy.
PMID: 31837833
ISSN: 1532-7361
CID: 4741422

A systematic review of surgical resection of liver-only synchronous metastases from pancreatic cancer in the era of multiagent chemotherapy

Crippa, Stefano; Cirocchi, Roberto; Weiss, Matthew J; Partelli, Stefano; Reni, Michele; Wolfgang, Christopher L; Hackert, Thilo; Falconi, Massimo
Recent studies considered surgery as a treatment option for patients with pancreatic ductal adenocarcinoma (PDAC) and synchronous liver metastases. The aim of this study was to evaluate systematically the literature on the role of surgical resection in this setting as an upfront procedure or following primary chemotherapy. A systematic search was performed of PubMed, Embase and the Cochrane Library in accordance with PRISMA guidelines. Only studies that included patients with synchronous liver metastases published in the era of multiagent chemotherapy (after 2011) were considered, excluding those with lung/peritoneal metastases or metachronous liver metastases. Median overall survival (OS) was the primary outcome. Six studies with 204 patients were analyzed. 63% of patients underwent upfront pancreatic and liver resection, 35% had surgery after primary chemotherapy with strict selection criteria and 2% had an inverse approach (liver surgery first). 38 patients (18.5%) did not undergo any liver resection since metastases disappeared after chemotherapy. Postoperative mortality was low (< 2%). Median OS ranged from 7.6 to 14.5 months after upfront pancreatic/liver resection and from 34 to 56 months in those undergoing preoperative treatment. This systematic review suggests that surgical resection of pancreatic cancer with synchronous liver oligometastases is safe, and it can be associated with improved survival, providing a careful selection of patients after primary chemotherapy.
PMID: 31997233
ISSN: 2038-3312
CID: 4741442

Genetic Analysis of Small Well-differentiated Pancreatic Neuroendocrine Tumors Identifies Subgroups With Differing Risks of Liver Metastases

Pea, Antonio; Yu, Jun; Marchionni, Luigi; Noe, Michael; Luchini, Claudio; Pulvirenti, Alessandra; de Wilde, Roeland F; Brosens, Lodewijk A; Rezaee, Neda; Javed, Ammar; Chianchiano, Peter; Gobbo, Stefano; Regi, Paolo; Salvia, Roberto; Bassi, Claudio; He, Jin; Weiss, Matthew J; Cameron, John L; Offerhaus, G Johan A; Hruban, Ralph H; Lawlor, Rita T; Scarpa, Aldo; Heaphy, Christopher M; Wood, Laura D; Wolfgang, Christopher L
OBJECTIVE:The aim of this study was to investigate the key molecular alterations in small primary pancreatic neuroendocrine tumors (PanNETs) associated with the development of liver metastases. BACKGROUND:Well-differentiated PanNETs with small size are typically indolent; however, a limited subset metastasize to the liver. METHODS:A total of 87 small primary PanNETs (<3 cm), including 32 metastatic cases and 55 nonmetastatic cases after a 5-year follow-up, were immunolabeled for DAXX/ATRX and analyzed for alternative lengthening of telomeres (ALT) by Fluorescence In Situ Hybridization. A subset of these cases, 24 that metastasized and 24 that did not metastasize, were assessed by targeted next-generation sequencing and whole-genome copy number variation. RESULTS:In the entire cohort, high Ki-67 (OR 1.369; 95% CI 1.121-1.673; P = 0.002), N-stage (OR 4.568; 95% CI 1.458-14.312; P = 0.009), and ALT-positivity (OR 3.486; 95% CI 1.093-11.115; P = 0.035) were independently associated with liver metastases. In the subset assessed by next-generation sequencing and copy number variation analysis, 3 molecular subtypes with differing risks of liver metastases were identified. Group 1 (n = 15; 73% metastasized) was characterized by recurrent chromosomal gains, CN-LOH, DAXX mutations, and ALT-positivity. Group 2 (n = 19; 42% metastasized, including 5 G1 tumors) was characterized by limited copy number alterations and mutations. Group 3 (n = 14; 35% metastasized) were defined by chromosome 11 loss. CONCLUSIONS:We identified genomic patterns of small PanNETs associated with a different risk for liver metastases. Molecular alterations, such as DAXX mutations, chromosomal gains, and ALT, are associated with an increased risk of metastasis in small PanNETs. Therefore, targeted sequencing and/or ALT analysis may help in the clinical decisions for these small PanNETs.
PMID: 30339629
ISSN: 1528-1140
CID: 4740892

Is the New T1 Category as Defined in the Eighth Edition of the AJCC Pancreatic Cancer Staging System an Improvement?

Kwon, Wooil; Park, Taesung; He, Jin; Higuchi, Ryota; Son, Donghee; Lee, Seung Yeoun; Kim, Jaeri; Byun, Yoonhyeong; Kim, Hongbeom; Kim, Sun-Whe; Wolfgang, Christopher L; Yamamoto, Masakazu; Jang, Jin-Young
BACKGROUND:The new T1 pancreatic cancer by the eighth edition of the AJCC staging system discards the concept of "extension beyond the pancreas" and focuses on size only. Furthermore, the new T1 is divided into T1a, T1b, and T1c based on size. The evidence pertaining to these changes has not been evaluated. This is to evaluate the feasibility of the new T1 definition in the pancreas head cancer cohort. METHODS:Data from 540 patients with T1 pancreatic ductal adenocarcinoma as defined by the eighth edition were collected from Korea, Japan, and the USA. Invasive IPMNs were excluded. Survival analyses were performed. RESULTS:Of the 540 patients, 181 patients were T1 according to the seventh edition and 359 were down-staged to T1 from the former T3 because the concept of "extension beyond the pancreas" was discarded. The 5-year survival rate and the median survival of T1 patients were 30.6% and 27 months, respectively. Comparing tumors that extend beyond the pancreas (new T1) and those confined within the pancreas (original T1), the latter showed significantly longer median survival (43 vs. 24 months, p < 0.001). In terms of T1a/b/c, there were no significant differences in survival. Using MaxStat, subdividing into two groups using 1.1 cm as the cut-off value, yielded significantly discrete prognostic groups (p < 0.001). CONCLUSION:The new T1 definition may be more practical, but the implications of the concept of "extension beyond the pancreas" should be re-investigated. Further, the subcategorization of T1a/b/c may not be adequate and may require revision or deletion.
PMID: 31823321
ISSN: 1873-4626
CID: 4741412

Proposal of the minimal number of retrieved regional lymph nodes for accurate staging of distal bile duct cancer and clinical validation of the three-tier lymph node staging system (AJCC 8th edition)

Kang, Jae Seung; Higuchi, Ryota; He, Jin; Yamamoto, Masakazu; Wolfgang, Christopher L; Cameron, John L; Han, Youngmin; Son, Donghee; Lee, Seungyeon; Choi, Yoo Jin; Byun, Yoonhyeong; Kim, Hongbeom; Kwon, Wooil; Kim, Sun-Whe; Park, Taesung; Jang, Jin-Young
BACKGROUND:The minimal required number of retrieved lymph nodes (MNRLNs) to enable accurate staging of distal bile duct (DBD) adenocarcinoma remains unclear. The three-tier 8th N staging system of the American Joint Committee on Cancer (AJCC) for DBD adenocarcinoma has been recently released. The present study is aimed at proposing the MNRLNs for accurate staging and validating the 8th N stage. METHODS:Between 1991 and 2015, patients with pathologically confirmed DBD adenocarcinoma who underwent pancreatoduodenectomy were enrolled. MNRLN was calculated via a log-rank test based on cut-off values. The concordance index (C-index) was utilized to compare the discrimination capability of the two- and three-tier N stages. RESULTS:A total of 780 patients were enrolled. Lymph node (LN) positivity and 5-year overall survival (5-YOS) rates stabilized and significant survival differences between node-negative and -positive patients were observed when ≥12 LNs were retrieved. 5-YOS rates between each 8th N stage significantly differ (N0 vs. N1, P = 0.037; N1 vs. N2, P = 0.003). The C-index of the 8th N stage was higher than that of the 7th (0.59 vs. 0.57). CONCLUSIONS:For accurate staging, at least 12 LNs should be retrieved. The three-tier N staging system is valid for clinical practice and has a more accurate prognostic predictability than the two-tier system.
PMID: 31633308
ISSN: 1868-6982
CID: 4741372

The Miami International Evidence-based Guidelines on Minimally Invasive Pancreas Resection

Asbun, Horacio J; Moekotte, Alma L; Vissers, Frederique L; Kunzler, Filipe; Cipriani, Federica; Alseidi, Adnan; D'Angelica, Michael I; Balduzzi, Alberto; Bassi, Claudio; Björnsson, Bergthor; Boggi, Ugo; Callery, Mark P; Del Chiaro, Marco; Coimbra, Felipe J; Conrad, Claudius; Cook, Andrew; Coppola, Alessandro; Dervenis, Christos; Dokmak, Safi; Edil, Barish H; Edwin, Bjørn; Giulianotti, Pier C; Han, Ho-Seong; Hansen, Paul D; van der Heijde, Nicky; van Hilst, Jony; Hester, Caitlin A; Hogg, Melissa E; Jarufe, Nicolas; Jeyarajah, D Rohan; Keck, Tobias; Kim, Song Cheol; Khatkov, Igor E; Kokudo, Norihiro; Kooby, David A; Korrel, Maarten; de Leon, Francisco J; Lluis, Nuria; Lof, Sanne; Machado, Marcel A; Demartines, Nicolas; Martinie, John B; Merchant, Nipun B; Molenaar, I Quintus; Moravek, Cassadie; Mou, Yi-Ping; Nakamura, Masafumi; Nealon, William H; Palanivelu, Chinnusamy; Pessaux, Patrick; Pitt, Henry A; Polanco, Patricio M; Primrose, John N; Rawashdeh, Arab; Sanford, Dominic E; Senthilnathan, Palanisamy; Shrikhande, Shailesh V; Stauffer, John A; Takaori, Kyoichi; Talamonti, Mark S; Tang, Chung N; Vollmer, Charles M; Wakabayashi, Go; Walsh, R Matthew; Wang, Shin-E; Zinner, Michael J; Wolfgang, Christopher L; Zureikat, Amer H; Zwart, Maurice J; Conlon, Kevin C; Kendrick, Michael L; Zeh, Herbert J; Hilal, Mohammad Abu; Besselink, Marc G
OBJECTIVE:The aim of this study was to develop and externally validate the first evidence-based guidelines on minimally invasive pancreas resection (MIPR) before and during the International Evidence-based Guidelines on Minimally Invasive Pancreas Resection (IG-MIPR) meeting in Miami (March 2019). SUMMARY BACKGROUND DATA:MIPR has seen rapid development in the past decade. Promising outcomes have been reported by early adopters from high-volume centers. Subsequently, multicenter series as well as randomized controlled trials were reported; however, guidelines for clinical practice were lacking. METHODS:The Scottisch Intercollegiate Guidelines Network (SIGN) methodology was used, incorporating these 4 items: systematic reviews using PubMed, Embase, and Cochrane databases to answer clinical questions, whenever possible in PICO style, the GRADE approach for assessment of the quality of evidence, the Delphi method for establishing consensus on the developed recommendations, and the AGREE-II instrument for the assessment of guideline quality and external validation. The current guidelines are cosponsored by the International Hepato-Pancreato-Biliary Association, the Americas Hepato-Pancreato-Biliary Association, the Asian-Pacific Hepato-Pancreato-Biliary Association, the European-African Hepato-Pancreato-Biliary Association, the European Association for Endoscopic Surgery, Pancreas Club, the Society of American Gastrointestinal and Endoscopic Surgery, the Society for Surgery of the Alimentary Tract, and the Society of Surgical Oncology. RESULTS:After screening 16,069 titles, 694 studies were reviewed, and 291 were included. The final 28 recommendations covered 6 topics; laparoscopic and robotic distal pancreatectomy, central pancreatectomy, pancreatoduodenectomy, as well as patient selection, training, learning curve, and minimal annual center volume required to obtain optimal outcomes and patient safety. CONCLUSION:The IG-MIPR using SIGN methodology give guidance to surgeons, hospital administrators, patients, and medical societies on the use and outcome of MIPR as well as the approach to be taken regarding this challenging type of surgery.
PMID: 31567509
ISSN: 1528-1140
CID: 4741362

Patient-derived organoids may facilitate precision medicine in pancreatic cancer: Demonstrating feasibility in the context of a multi-center clinical trial [Meeting Abstract]

Seppala, Toni T.; Zimmerman, Jacquelyn W.; Rozich, Noah; Blair, Alex; Javed, Ammar; Cameron, John L.; Burns, William R.; He, Jin; Tuveson, David; Wolfgang, Christopher L.; Ryan, David P.; Kimmelman, Alec; Herman, Joseph M.; Messersmith, Wells; Hong, Theodore S.; Ting, David T.; Burkhart, Richard Andrew
ISI:000590059302210
ISSN: 0008-5472
CID: 5373042

Histomorphology of pancreatic cancer in patients with inherited ATM serine/threonine kinase pathogenic variants

Hutchings, Danielle; Jiang, Zhengdong; Skaro, Michael; Weiss, Matthew J; Wolfgang, Christopher L; Makary, Martin A; He, Jin; Cameron, John L; Zheng, Lei; Klimstra, David S; Brand, Randall E; Singhi, Aatur D; Goggins, Michael; Klein, Alison P; Roberts, Nicholas J; Hruban, Ralph H
Germline pathogenic variants in the ATM serine/threonine kinase (ATM) gene are associated with an increased risk of pancreatic ductal adenocarcinoma. It is important to identify germline ATM pathogenic variants in pancreatic cancer patients because these alterations are potentially targetable with chemotherapeutic drugs and/or radiation and have implications for other family members. As germline pathogenic variants in other genes have been associated with distinct histologic subtypes of pancreatic cancer, we studied the histomorphology of pancreatic cancer in 23 patients with germline ATM pathogenic variants. The histologic subtype was ductal adenocarcinoma in 19/23 (83%) of the patients, adenosquamous carcinoma in 1/23 (4%), and colloid (mucinous non-cystic) carcinoma in 3/23 (13%). The percentage of colloid (mucinous non-cystic) carcinomas is higher than we have previously observed in patients with familial and sporadic pancreatic cancer (1 and 2% in prior reports, p < 0.01 and p < 0.01, respectively). Three carcinomas (2 colloid carcinomas, 1 ductal adenocarcinoma) arose in association with intraductal papillary mucinous neoplasms. Among the resected pancreata, non-invasive precursor lesions, including pancreatic intraepithelial neoplasia and incipient intraductal papillary mucinous neoplasms, were identified in 83%. We conclude that pancreatic cancers in patients with germline ATM pathogenic variants are more frequently of colloid (mucinous non-cystic) morphology but are overall morphologically diverse supporting the utility of universal germline genetic testing for patients with pancreatic cancer.
PMCID:7403604
PMID: 31285527
ISSN: 1530-0285
CID: 4741262

Validation of a nomogram to predict the risk of cancer in patients with intraductal papillary mucinous neoplasm and main duct dilatation of 10 mm or less

Jung, W; Park, T; Kim, Y; Park, H; Han, Y; He, J; Wolfgang, C L; Blair, A; Rashid, M F; Kluger, M D; Su, G H; Chabot, J A; Yang, C-Y; Lou, W; Valente, R; Del Chiaro, M; Shyr, Y-M; Wang, S-E; van Huijgevoort, N C M; Besselink, M G; Yang, Y; Kim, H; Kwon, W; Kim, S-W; Jang, J-Y
BACKGROUND:Intraductal papillary mucinous neoplasm (IPMN) is premalignant pancreatic lesion. International guidelines offer limited predictors of individual risk. A nomogram to predict individual IPMN malignancy risk was released, with good diagnostic performance based on a large cohort of Asian patients with IPMN. The present study validated a nomogram to predict malignancy risk and invasiveness of IPMN using both Eastern and Western cohorts. METHODS:Clinicopathological and radiological data from patients who underwent pancreatic resection for IPMN at four centres each in Eastern and Western countries were collected. After excluding patients with missing data for at least one malignancy predictor in the nomogram (main pancreatic duct diameter, cyst size, presence of mural nodule, serum carcinoembryonic antigen and carbohydrate antigen (CA) 19-9 levels, and age). RESULTS:In total, data from 393 patients who fit the criteria were analysed, of whom 265 were from Eastern and 128 from Western institutions. Although mean age, sex, log value of serum CA19-9 level, tumour location, main duct diameter, cyst size and presence of mural nodule differed between the Korean/Japanese, Eastern and Western cohorts, rates of malignancy and invasive cancer did not differ significantly. Areas under the receiver operating characteristic (ROC) curve values for the nomogram predicting malignancy were 0·745 for Eastern, 0·856 for Western and 0·776 for combined cohorts; respective values for the nomogram predicting invasiveness were 0·736, 0·891 and 0·788. CONCLUSIONS:External validation of the nomogram showed good performance in predicting cancer in both Eastern and Western patients with IPMN lesions.
PMID: 31441048
ISSN: 1365-2168
CID: 5786552