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Stimulated raman histology allows for rapid pathologic examination of unprocessed, fresh prostate biopsies [Meeting Abstract]
Mannas, M; Jones, D; Deng, F -M; Hoskoppal, D; Melamed, J; Orringer, D; Taneja, S S
Introduction & Objectives: Delay between prostate biopsy (PB) and pathologic diagnosis leads to a concern of inadequate sampling and repeated biopsy. Stimulated Raman Histology (SRH) is a novel microscopic technique allowing real time, label-free, high-resolution microscopic images of unprocessed, un-sectioned tissue. We evaluated the accuracy of pathologist interpretation of PB SRH as compared to traditional hematoxylin and eosin (H&E) stained slides.
Material(s) and Method(s): Men undergoing prostatectomy were included in an IRB approved prospective study. 18-gauge PB cores, taken ex vivo from prostatectomy specimen, were scanned in a SRH microscope at 20 microns depth over 10-14 minutes using two Raman shifts: 2845cm-1 and 2930cm-1, to create SRH images. The cores were then processed as per normal pathologic protocols. 16 PB containing benign/prostate cancer histology were used as a SRH training cohort for 4 GU pathologists (1, 3, 2x >15 yrs experience), who were then tested on a set of 32 PB imaged by SRH and processed by traditional H&E. Sensitivity, specificity, and concordance for PCa detection on SRH relative to a consensus H&E were assessed. With a two-sided alpha level of 5%, it was calculated 32 SRH imaged biopsies would provide 90% power to detect concordance (k).
Result(s): PB cores were imaged in 2-3 separate strips (11-21 minutes) shown in Figure 1. In identifying any cancer, pathologists achieved moderate concordance (k=0.570; p<0.001) which improved when identifying GGG 2-5 PCa only (k=0.640, p<0001; sensitivity 96.4%; specificity 58.3%). In predicting Gleason score, the concordance for each pathologist varied from poor to moderate (k range -0.163 to 0.457). After individual assessment was completed a pathology consensus conference was held for the interpretation of the SRH PB. In identifying any prostate cancer, pathologists achieved near perfect concordance (k=0.925; p<0.001; sensitivity 95.6%; specificity 100%). When evaluating SRH in a consensus conference, the group prediction of Gleason score improved to moderate concordance (k=0.470; p<0.001). (Figure Presented) (Figure Presented)
Conclusion(s): SRH produces high quality microscopic images that allow for accurate identification of PCa in real-time without need for sectioning or tissue-processing. Individual pathologist performance varied highly suggesting potential for improvement with further training. Future SRH interpretation by convolutional neural network may further enhance GGG prediction
Copyright
EMBASE:2016656816
ISSN: 1873-7560
CID: 5184442
Optimal Method for Reporting Prostate Cancer Grade in MRI-targeted Biopsies
Deng, Fang-Ming; Isaila, Bogdan; Jones, Derek; Ren, Qinghu; Kyung, Park; Hoskoppal, Deepthi; Huang, Hongying; Mirsadraei, Leili; Xia, Yuhe; Melamed, Jonathan
When multiple cores are biopsied from a single magnetic resonance imaging (MRI)-targeted lesion, Gleason grade may be assigned for each core separately or for all cores of the lesion in aggregate. Because of the potential for disparate grades, an optimal method for pathology reporting MRI lesion grade awaits validation. We examined our institutional experience on the concordance of biopsy grade with subsequent radical prostatectomy (RP) grade of targeted lesions when grade is determined on individual versus aggregate core basis. For 317 patients (with 367 lesions) who underwent MRI-targeted biopsy followed by RP, targeted lesion grade was assigned as (1) global Grade Group (GG), aggregated positive cores; (2) highest GG (highest grade in single biopsy core); and (3) largest volume GG (grade in the core with longest cancer linear length). The 3 biopsy grades were compared (equivalence, upgrade, or downgrade) with the final grade of the lesion in the RP, using κ and weighted κ coefficients. The biopsy global, highest, and largest GGs were the same as the final RP GG in 73%, 68%, 62% cases, respectively (weighted κ: 0.77, 0.79, and 0.71). For cases where the targeted lesion biopsy grade scores differed from each other when assigned by global, highest, and largest GG, the concordance with the targeted lesion RP GG was 69%, 52%, 31% for biopsy global, highest, and largest GGs tumors (weighted κ: 0.65, 0.68, 0.59). Overall, global, highest, and largest GG of the targeted biopsy show substantial agreement with RP-targeted lesion GG, however targeted global GG yields slightly better agreement than either targeted highest or largest GG. This becomes more apparent in nearly one third of cases when each of the 3 targeted lesion level biopsy scores differ. These results support the use of global (aggregate) GG for reporting of MRI lesion-targeted biopsies, while further validations are awaited.
PMID: 34115670
ISSN: 1532-0979
CID: 4900372
Kidney Tumor Classifier Using Whole Genome Methylation Array [Meeting Abstract]
Park, Kyung; Serrano, Jonathan; Chen, Fei; Tran, Ivy; Vasudevaraja, Varshini; Hoskoppal, Deepthi; Deng, Fang-Ming; Snuderl, Matija
ISI:000770361801236
ISSN: 0893-3952
CID: 5243342
Editorial: Molecular biomarkers and imaging markers in the prediction, diagnosis, and prognosis of bladder cancer
Luo, Yongwen; Deng, Fang-Ming; Zhang, Yi; Xiao, Yu
PMCID:9614322
PMID: 36313549
ISSN: 2296-634x
CID: 5358432
Kidney Tumor Classifier Using Whole Genome Methylation Array [Meeting Abstract]
Park, Kyung; Serrano, Jonathan; Chen, Fei; Tran, Ivy; Vasudevaraja, Varshini; Hoskoppal, Deepthi; Deng, Fang-Ming; Snuderl, Matija
ISI:000770360201236
ISSN: 0023-6837
CID: 5243212
Long non-coding RNA in prostate cancer
An, Christine; Wang, Ian; Li, Xin; Xia, Rong; Deng, Fangming
Prostate cancer is the most frequently diagnosed cancer in males and its development and progression remains an important area of study. Recently, long non-coding RNAs (lncRNAs) have been evidenced as key players in cancer pathogenesis. Specifically, dysregulation of long non-coding RNA (lncRNA) expression has shown to affect tumor proliferation and metastasis, acting as either tumor suppressors or oncogenes. However, its specific mechanisms and functions in prostate cancer remain unclear. This review provides an overview of currently available information on prostate cancer-related lncRNAs, including GAS5, GAS-007, MEG3, PCA3, PCAT14, PCAT1, PVT1, UCA1, SChLAP1, MALAT1, HOTAIR, and NEAT1. Notable tumor growth inhibitors include GAS5 and MEG3. GAS5 is evidenced to interfere with the AKT/MTOR signaling pathway through targeting microRNA mir-103. MEG3, however, is proposed to inhibit the cycle, sponge miR-9-5p, and induce gene silencing. PCAT1, PVT1, and UCA1 are important tumor growth promoters. PCAT1 is indicated to be a transcriptional repressor, a mir-145-5P sponge, and a P13K/AKT pathway activator. Studies suggest that PVT1 acts via microRNA targeting and regulating proliferating cell nuclear antigen. UCA1 may sponge miR-204 and miR-331-3p as well as regulate myosin VI. Thorough understanding of these lncRNAs may elucidate new aspects of prostate cancer pathology and serve a pivotal role in developing novel diagnostic and prognostic techniques.
PMCID:9301060
PMID: 35874287
ISSN: 2330-1910
CID: 5276152
The Spectrum of Biopsy Site Histologic Change in the Radical Prostatectomy Specimen [Meeting Abstract]
Melamed, Jonathan; Ren, Joyce; Deng, Fang-Ming; Hoskoppal, Deepthi; Huang, Hongying; Jones, Derek
ISI:000770360201220
ISSN: 0023-6837
CID: 5243202
A phase 1/2 multicenter investigator-initiated trial of DKN-01 as monotherapy or in combination with docetaxel for the treatment of metastatic castration-resistant prostate cancer (mCRPC). [Meeting Abstract]
Wise, David R.; Pachynski, Russell Kent; Denmeade, Samuel R.; Aggarwal, Rahul Raj; Febles, Victor Ricardo Adorno; Balar, Arjun Vasant; Economides, Minas P.; Sirard, Cynthia A.; Troxel, Andrea; Griglun, Sarah; Leis, Dayna; Yang, Nina; Aranchiy, Viktoriya; Machado, Sabrina; Waalkes, Erika; Gargano, Gabrielle; Deng, Fang-Ming; Fadel, Ezeddin; Chiriboga, Luis; Melamed, Jonathan
ISI:000863680301467
ISSN: 0732-183x
CID: 5525642
Identification of novel biomarkers differentially expressed between African-American and Caucasian-American prostate cancer patients
Ye, Fei; Han, Xiaoxia; Shao, Yonzhao; Lo, Jingzhi; Zhang, Fengxia; Wang, Jinhua; Melamed, Jonathan; Deng, Fang-Ming; Sfanos, Karen S; De Marzo, Angelo; Ren, Guoping; Wang, Dongwen; Zhang, David; Lee, Peng
Prostate cancer (PCa) incidence and mortality rate vary among racial and ethnic groups with the highest occurrence in African American (AA) men who have mortality rates twice that of Caucasians (CA). In this study, we focused on differential expression of proteins in AA prostate cancer compared to CA using Protein Pathway Array Analysis (PPAA), in order to identify protein biomarkers associated with PCa racial disparity. Fresh frozen prostate samples (n=90) obtained from radical prostatectomy specimens with PCa, including 25 AA tumor, 21 AA benign, 23 CA tumor, 21 CA benign samples were analyzed. A total of 286 proteins and phosphoproteins were assessed using PPAA. By PPAA analysis, 33 proteins were found to be significantly differentially expressed in tumor tissue (n=48, including both CA and AA) in comparison to benign tissue (n=42). We further compared protein expression levels between AA and CA tumor groups and found that 3 proteins were differentially expressed (P<0.05 and q<5%). Aurora was found to be significantly increased in AA tumors, while Cyclin D1 and HNF-3a proteins were downregulated in AA tumors. Predicted risk score was significantly different between AA and CA ethnic groups using logistic regression analysis. In conclusion, we identified Aurora, Cyclin D1 and HNF-3a proteins as being differentially expressed between AA and CA in PCa tissue. Our study suggests that these proteins might be involved in different pathways that lead to aggressive PCa behavior in AA patients, potentially serving as biomarkers for the PCa racial disparity.
PMCID:9077070
PMID: 35530298
ISSN: 2156-6976
CID: 5214062
Stimulated Raman Spectroscopy as Rapid On-site Evaluation of Renal Neoplastic and Non-neoplastic Biopsies [Meeting Abstract]
Ren, Joyce; Mannas, Miles; Jones, Derek; Orringer, Daniel; Taneja, Samir; Deng, Fang-Ming
ISI:000770360203144
ISSN: 0023-6837
CID: 5243232