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A deep learning approach for real-time detection of sleep spindles
Kulkarni, Prathamesh M; Xiao, Zhengdong; Robinson, Eric J; Sagarwa Jami, Apoorva; Zhang, Jianping; Zhou, Haocheng; Henin, Simon E; Liu, Anli A; Osorio, Ricardo S; Wang, Jing; Chen, Zhe Sage
OBJECTIVE:Sleep spindles have been implicated in memory consolidation and synaptic plasticity during NREM sleep. Detection accuracy and latency in automatic spindle detection are critical for real-time applications. APPROACH/METHODS:Here we propose a novel deep learning strategy (SpindleNet) to detect sleep spindles based on a single EEG channel. While the majority of spindle detection methods are used for off-line applications, our method is well suited for online applications. MAIN RESULTS/RESULTS:Compared with other spindle detection methods, SpindleNet achieves superior detection accuracy and speed, as demonstrated in two publicly available expert-validated EEG sleep spindle datasets. Our real-time detection of spindle onset achieves detection latencies of 150-350 ms (~2-3 spindle cycles) and retains excellent performance under low EEG sampling frequencies and low signal-to-noise ratios. SpindleNet has good generalization across different sleep datasets from various subject groups of different ages and species. SIGNIFICANCE/CONCLUSIONS:SpindleNet is ultra-fast and scalable to multichannel EEG recordings, with an accuracy level comparable to human experts, making it appealing for long-term sleep monitoring and closed-loop neuroscience experiments. 
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PMID: 30790769
ISSN: 1741-2552
CID: 3687552
Hippocampal gamma predicts associative memory performance as measured by acute and chronic intracranial EEG
Henin, Simon; Shankar, Anita; Hasulak, Nicholas; Friedman, Daniel; Dugan, Patricia; Melloni, Lucia; Flinker, Adeen; Sarac, Cansu; Fang, May; Doyle, Werner; Tcheng, Thomas; Devinsky, Orrin; Davachi, Lila; Liu, Anli
Direct recordings from the human brain have historically involved epilepsy patients undergoing invasive electroencephalography (iEEG) for surgery. However, these measurements are temporally limited and affected by clinical variables. The RNS System (NeuroPace, Inc.) is a chronic, closed-loop electrographic seizure detection and stimulation system. When adapted by investigators for research, it facilitates cognitive testing in a controlled ambulatory setting, with measurements collected over months to years. We utilized an associative learning paradigm in 5 patients with traditional iEEG and 3 patients with chronic iEEG, and found increased hippocampal gamma (60-100 Hz) sustained at 1.3-1.5 seconds during encoding in successful versus failed trials in surgical patients, with similar results in our RNS System patients (1.4-1.6 seconds). Our findings replicate other studies demonstrating that sustained hippocampal gamma supports encoding. Importantly, we have validated the RNS System to make sensitive measurements of hippocampal dynamics during cognitive tasks in a chronic ambulatory research setting.
PMID: 30679734
ISSN: 2045-2322
CID: 3610122
Closed-loop acoustic stimulation enhances sleep oscillations but not memory performance
Henin, Simon; Borges, Helen; Shankar, Anita; Sarac, Cansu; Melloni, Lucia; Friedman, Daniel; Flinker, Adeen; Parra, Lucas C; Buzsaki, Gyorgy; Devinsky, Orrin; Liu, Anli
Slow-oscillations and spindle activity during non-REM sleep have been implicated in memory consolidation. Closed-loop acoustic stimulation has previously been shown to enhance slow oscillations and spindle activity during sleep and improve verbal associative memory. We assessed the effect of closed-loop acoustic stimulation during a daytime nap on a virtual reality spatial navigation task in 12 healthy human subjects in a randomized within-subject crossover design. We show robust enhancement of slow-spindle activity during sleep. However, no effects on behavioral performance were observed when comparing real versus sham stimulation. To explore whether memory enhancement effects were task-specific and dependent on nocturnal sleep, in a second experiment with 19 healthy subjects, we aimed to replicate a previous study which used closed-loop acoustic stimulation to enhance memory for word pairs. Methods were as close as possible to the original study, except we used a double-blind protocol, in which both subject and experimenter were unaware of the test condition. Again, we successfully enhanced slow-spindle power, but again did not strengthen associative memory performance with stimulation. We conclude that enhancement of slow-spindle oscillations may be insufficient to enhance memory performance in spatial navigation or verbal association tasks, and provide possible explanations for lack of behavioral replication.SIGNIFICANCE STATEMENT Prior studies have demonstrated that a closed-loop acoustic pulse paradigm during sleep can enhance verbal memory performance. This technique has widespread scientific and clinical appeal due to its non-invasive nature and ease of application. We tested with a rigorous double-blind design whether this technique could enhance key sleep rhythms associated sleep-dependent memory performance. We discovered that we could reliably enhance slow and spindle rhythms, but did not improve memory performance in the stimulation condition compared to sham condition. Our findings suggest that enhancing slow-spindle rhythms is insufficient to enhance sleep-dependent learning.
PMID: 31604814
ISSN: 2373-2822
CID: 4130772
Immediate neurophysiological effects of transcranial electrical stimulation
Liu, Anli; Voroslakos, Mihaly; Kronberg, Greg; Henin, Simon; Krause, Matthew R; Huang, Yu; Opitz, Alexander; Mehta, Ashesh; Pack, Christopher C; Krekelberg, Bart; Berenyi, Antal; Parra, Lucas C; Melloni, Lucia; Devinsky, Orrin; Buzsaki, Gyorgy
Noninvasive brain stimulation techniques are used in experimental and clinical fields for their potential effects on brain network dynamics and behavior. Transcranial electrical stimulation (TES), including transcranial direct current stimulation (tDCS) and transcranial alternating current stimulation (tACS), has gained popularity because of its convenience and potential as a chronic therapy. However, a mechanistic understanding of TES has lagged behind its widespread adoption. Here, we review data and modelling on the immediate neurophysiological effects of TES in vitro as well as in vivo in both humans and other animals. While it remains unclear how typical TES protocols affect neural activity, we propose that validated models of current flow should inform study design and artifacts should be carefully excluded during signal recording and analysis. Potential indirect effects of TES (e.g., peripheral stimulation) should be investigated in more detail and further explored in experimental designs. We also consider how novel technologies may stimulate the next generation of TES experiments and devices, thus enhancing validity, specificity, and reproducibility.
PMID: 30504921
ISSN: 2041-1723
CID: 3609212
Hippocampal Gamma Predicts Associative Memory Performance as Measured by Acute and Chronic Intracranial EEG [Meeting Abstract]
Henin, Simon; Shankar, Anita; Hasulak, Nicholas; Friedman, Daniel; Dugan, Patricia; Melloni, Lucia; Flinker, Adeen; Sarac, Cansu; Fang, May; Doyle, Werner; Tcheng, Thomas; Devinsky, Orrin; Davachi, Lila; Liu, Anli
ISI:000446520900467
ISSN: 0364-5134
CID: 3726232
Hippocampal signature of associative memory measured by chronic ambulatory intracranial EEG [Meeting Abstract]
Liu, A
Some patients with medically refractory focal epilepsy are chronically implanted with a brain-responsive neurostimulation device (the RNS System), permitting neurophysiological mea-surements at millisecond resolution. This clinical device can be adapted to measure hippocampal dynamics time-locked to cognitive tasks. We illustrate the technique with a proof of concept in three patients previously implanted with the RNS System as they engage in an associative memory task, measured months apart. Hippocampal activity measured in successful encoding in RNS System patients mirrors that in surgical patients during intracranial electroencephalography (iEEG), suggesting that chronic iEEG allows sensitive measurements of hippocampal physiology over prolonged timescales
EMBASE:624732931
ISSN: 1531-8249
CID: 3429392
Author Correction: Low frequency transcranial electrical stimulation does not entrain sleep rhythms measured by human intracranial recordings [Correction]
Lafon, Belen; Henin, Simon; Huang, Yu; Friedman, Daniel; Melloni, Lucia; Thesen, Thomas; Doyle, Werner; Buzsaki, Gyorgy; Devinsky, Orrin; Parra, Lucas C; Liu, Anli
It has come to our attention that we did not specify whether the stimulation magnitudes we report in this Article are peak amplitudes or peak-to-peak. All references to intensity given in mA in the manuscript refer to peak-to-peak amplitudes, except in Fig. 2, where the model is calibrated to 1 mA peak amplitude, as stated. In the original version of the paper we incorrectly calibrated the computational models to 1 mA peak-to-peak, rather than 1 mA peak amplitude. This means that we divided by a value twice as large as we should have. The correct estimated fields are therefore twice as large as shown in the original Fig. 2 and Supplementary Figure 11. The corrected figures are now properly calibrated to 1 mA peak amplitude. Furthermore, the sentence in the first paragraph of the Results section 'Intensity ranged from 0.5 to 2.5 mA (current density 0.125-0.625 mA mA/cm2), which is stronger than in previous reports', should have read 'Intensity ranged from 0.5 to 2.5 mA peak to peak (peak current density 0.0625-0.3125 mA/cm2), which is stronger than in previous reports.' These errors do not affect any of the Article's conclusions.
PMCID:5830401
PMID: 29491347
ISSN: 2041-1723
CID: 2965562
Correction:Â Measurements and models of electric fields in thein vivohuman brain during transcranial electric stimulation [Correction]
Huang, Yu; Liu, Anli A; Lafon, Belen; Friedman, Daniel; Dayan, Michael; Wang, Xiuyuan; Bikson, Marom; Doyle, Werner K; Devinsky, Orrin; Parra, Lucas C
PMCID:5814148
PMID: 29446753
ISSN: 2050-084x
CID: 2990352
Frontal lobe seizures, frontal cortex, and dissociative states
Chapter by: Liu, Anli; Devinsky, Orrin
in: The human frontal lobes: Functions and disorders by Miller, Bruce L [Ed]; Cummings, Jeffrey L [Ed]
New York, NY, US: Guilford Press, 2018
pp. 515-529
ISBN: 978-1-4625-3183-7
CID: 2961212
Low frequency transcranial electrical stimulation does not entrain sleep rhythms measured by human intracranial recordings
Lafon, Belen; Henin, Simon; Huang, Yu; Friedman, Daniel; Melloni, Lucia; Thesen, Thomas; Doyle, Werner; Buzsaki, Gyorgy; Devinsky, Orrin; Parra, Lucas C; A Liu, Anli
Transcranial electrical stimulation has widespread clinical and research applications, yet its effect on ongoing neural activity in humans is not well established. Previous reports argue that transcranial alternating current stimulation (tACS) can entrain and enhance neural rhythms related to memory, but the evidence from non-invasive recordings has remained inconclusive. Here, we measure endogenous spindle and theta activity intracranially in humans during low-frequency tACS and find no stable entrainment of spindle power during non-REM sleep, nor of theta power during resting wakefulness. As positive controls, we find robust entrainment of spindle activity to endogenous slow-wave activity in 66% of electrodes as well as entrainment to rhythmic noise-burst acoustic stimulation in 14% of electrodes. We conclude that low-frequency tACS at common stimulation intensities neither acutely modulates spindle activity during sleep nor theta activity during waking rest, likely because of the attenuated electrical fields reaching the cortical surface.
PMCID:5662600
PMID: 29084960
ISSN: 2041-1723
CID: 2765082