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Author Correction: Predicting standardized uptake value of brown adipose tissue from CT scans using convolutional neural networks
Erdil, Ertunc; Becker, Anton S; Schwyzer, Moritz; Martinez-Tellez, Borja; Ruiz, Jonatan R; Sartoretti, Thomas; Vargas, H Alberto; Burger, A Irene; Chirindel, Alin; Wild, Damian; Zamboni, Nicola; Deplancke, Bart; Gardeux, Vincent; Maushart, Claudia Irene; Betz, Matthias Johannes; Wolfrum, Christian; Konukoglu, Ender
PMID: 39562561
ISSN: 2041-1723
CID: 5758502
The "Hungry Judge" effect on prostate MRI reporting: Chronobiological trends from 35'004 radiologist interpretations
Becker, Anton S; Woo, Sungmin; Leithner, Doris; Tong, Angela; Mayerhoefer, Marius E; Vargas, H Alberto
AIM/OBJECTIVE:To investigate the associations between the hour of the day and Prostate Imaging-Reporting and Data System (PI-RADS) scores assigned by radiologists in prostate MRI reports. MATERIALS AND METHODS/METHODS:Retrospective single-center collection of prostate MRI reports over an 8-year period. Mean PI-RADS scores assigned between 0800 and 1800 h were examined with a regression model. RESULTS: = 0.005, p < 0.001), with malignant scores more frequently assigned later in the day. CONCLUSION/CONCLUSIONS:These findings suggest chronobiological factors may contribute to variability in radiological assessments. Though the magnitude of the effect is small, this may potentially add variability and impact diagnostic accuracy.
PMID: 39128251
ISSN: 1872-7727
CID: 5701892
Predicting standardized uptake value of brown adipose tissue from CT scans using convolutional neural networks
Erdil, Ertunc; Becker, Anton S; Schwyzer, Moritz; Martinez-Tellez, Borja; Ruiz, Jonatan R; Sartoretti, Thomas; Vargas, H Alberto; Burger, A Irene; Chirindel, Alin; Wild, Damian; Zamboni, Nicola; Deplancke, Bart; Gardeux, Vincent; Maushart, Claudia Irene; Betz, Matthias Johannes; Wolfrum, Christian; Konukoglu, Ender
The standard method for identifying active Brown Adipose Tissue (BAT) is [18F]-Fluorodeoxyglucose ([18F]-FDG) PET/CT imaging, which is costly and exposes patients to radiation, making it impractical for population studies. These issues can be addressed with computational methods that predict [18F]-FDG uptake by BAT from CT; earlier population studies pave the way for developing such methods by showing some correlation between the Hounsfield Unit (HU) of BAT in CT and the corresponding [18F]-FDG uptake in PET. In this study, we propose training convolutional neural networks (CNNs) to predict [18F]-FDG uptake by BAT from unenhanced CT scans in the restricted regions that are likely to contain BAT. Using the Attention U-Net architecture, we perform experiments on datasets from four different cohorts, the largest study to date. We segment BAT regions using predicted [18F]-FDG uptake values, achieving 23% to 40% better accuracy than conventional CT thresholding. Additionally, BAT volumes computed from the segmentations distinguish the subjects with and without active BAT with an AUC of 0.8, compared to 0.6 for CT thresholding. These findings suggest CNNs can facilitate large-scale imaging studies more efficiently and cost-effectively using only CT.
PMCID:11436835
PMID: 39333526
ISSN: 2041-1723
CID: 5714142
Utility of ADC Values for Differentiating Uterine Sarcomas From Leiomyomas: Systematic Review and Meta-Analysis
Woo, Sungmin; Beier, Sarah R; Tong, Angela; Hindman, Nicole M; Vargas, Hebert A; Kang, Stella K
PMID: 38899844
ISSN: 1546-3141
CID: 5672242
Microsatellite Instability, Tumor Mutational Burden, and Response to Immune Checkpoint Blockade in Patients with Prostate Cancer
Lenis, Andrew T; Ravichandran, Vignesh; Brown, Samantha; Alam, Syed M; Katims, Andrew; Truong, Hong; Reisz, Peter A; Vasselman, Samantha; Nweji, Barbara; Autio, Karen A; Morris, Michael J; Slovin, Susan F; Rathkopf, Dana; Danila, Daniel; Woo, Sungmin; Vargas, Hebert A; Laudone, Vincent P; Ehdaie, Behfar; Reuter, Victor; Arcila, Maria; Berger, Michael F; Viale, Agnes; Scher, Howard I; Schultz, Nikolaus; Gopalan, Anuradha; Donoghue, Mark T A; Ostrovnaya, Irina; Stopsack, Konrad H; Solit, David B; Abida, Wassim
PURPOSE/UNASSIGNED:Patients with microsatellite instability-high/mismatch repair-deficient (MSI-H/dMMR) and high tumor mutational burden (TMB-H) prostate cancers are candidates for pembrolizumab. We define the genomic features, clinical course, and response to immune checkpoint blockade (ICB) in patients with MSI-H/dMMR and TMB-H prostate cancers without MSI [TMB-H/microsatellite stable (MSS)]. EXPERIMENTAL DESIGN/UNASSIGNED:We sequenced 3,244 tumors from 2,257 patients with prostate cancer. MSI-H/dMMR prostate cancer was defined as an MSIsensor score ≥10 or MSIsensor score ≥3 and <10 with a deleterious MMR alteration. TMB-H was defined as ≥10 mutations/megabase. PSA50 and RECIST responses were assigned. Overall survival and radiographic progression-free survival (rPFS) were compared using log-rank test. RESULTS/UNASSIGNED:Sixty-three (2.8%) men had MSI-H/dMMR, and 33 (1.5%) had TMB-H/MSS prostate cancers. Patients with MSI-H/dMMR and TMB-H/MSS tumors more commonly presented with grade group 5 and metastatic disease at diagnosis. MSI-H/dMMR tumors had higher TMB, indel, and neoantigen burden compared with TMB-H/MSS. Twenty-seven patients with MSI-H/dMMR and 8 patients with TMB-H/MSS tumors received ICB, none of whom harbored polymerase epsilon (polE) catalytic subunit mutations. About 45% of patients with MSI-H/dMMR had a RECIST response, and 65% had a PSA50 response. No patient with TMB-H/MSS had a RECIST response, and 50% had a PSA50 response. rPFS tended to be longer in patients with MSI-H/dMMR than in patients with TMB-H/MSS who received immunotherapy. Pronounced differences in genomics, TMB, or MSIsensor score were not detected between MSI-H/dMMR responders and nonresponders. CONCLUSIONS/UNASSIGNED:MSI-H/dMMR prostate cancers have greater TMB, indel, and neoantigen burden than TMB-H/MSS prostate cancers, and these differences may contribute to profound and durable responses to ICB.
PMCID:11371520
PMID: 38949888
ISSN: 1557-3265
CID: 5732672
Pictorial review of multiparametric MRI in bladder urothelial carcinoma with variant histology: pearls and pitfalls
Arita, Yuki; Woo, Sungmin; Kwee, Thomas C; Shigeta, Keisuke; Ueda, Ryo; Nalavenkata, Sunny; Edo, Hiromi; Miyai, Kosuke; Das, Jeeban; Andrieu, Pamela I Causa; Vargas, Hebert Alberto
Bladder cancer (BC), predominantly comprising urothelial carcinomas (UCs), ranks as the tenth most common cancer worldwide. UCs with variant histology (variant UC), including squamous differentiation, glandular differentiation, plasmacytoid variant, micropapillary variant, sarcomatoid variant, and nested variant, accounting for 5-10% of cases, exhibit more aggressive and advanced tumor characteristics compared to pure UC. The Vesical Imaging-Reporting and Data System (VI-RADS), established in 2018, provides guidelines for the preoperative evaluation of muscle-invasive bladder cancer (MIBC) using multiparametric magnetic resonance imaging (mpMRI). This technique integrates T2-weighted imaging (T2WI), dynamic contrast-enhanced (DCE)-MRI, and diffusion-weighted imaging (DWI) to distinguish MIBC from non-muscle-invasive bladder cancer (NMIBC). VI-RADS has demonstrated high diagnostic performance in differentiating these two categories for pure UC. However, its accuracy in detecting muscle invasion in variant UCs is currently under investigation. These variant UCs are associated with a higher likelihood of disease recurrence and require precise preoperative assessment and immediate surgical intervention. This review highlights the potential value of mpMRI for different variant UCs and explores the clinical implications and prospects of VI-RADS in managing these patients, emphasizing the need for careful interpretation of mpMRI examinations including DCE-MRI, particularly given the heterogeneity and aggressive nature of variant UCs. Additionally, the review addresses the fundamental MRI reading procedures, discusses potential causes of diagnostic errors, and considers future directions in the use of artificial intelligence and radiomics to further optimize the bladder MRI protocol.
PMID: 38847848
ISSN: 2366-0058
CID: 5665842
Deep Learning Prostate MRI Segmentation Accuracy and Robustness: A Systematic Review
Fassia, Mohammad-Kasim; Balasubramanian, Adithya; Woo, Sungmin; Vargas, Hebert Alberto; Hricak, Hedvig; Konukoglu, Ender; Becker, Anton S
Purpose To investigate the accuracy and robustness of prostate segmentation using deep learning across various training data sizes, MRI vendors, prostate zones, and testing methods relative to fellowship-trained diagnostic radiologists. Materials and Methods In this systematic review, Embase, PubMed, Scopus, and Web of Science databases were queried for English-language articles using keywords and related terms for prostate MRI segmentation and deep learning algorithms dated to July 31, 2022. A total of 691 articles from the search query were collected and subsequently filtered to 48 on the basis of predefined inclusion and exclusion criteria. Multiple characteristics were extracted from selected studies, such as deep learning algorithm performance, MRI vendor, and training dataset features. The primary outcome was comparison of mean Dice similarity coefficient (DSC) for prostate segmentation for deep learning algorithms versus diagnostic radiologists. Results Forty-eight studies were included. Most published deep learning algorithms for whole prostate gland segmentation (39 of 42 [93%]) had a DSC at or above expert level (DSC ≥ 0.86). The mean DSC was 0.79 ± 0.06 (SD) for peripheral zone, 0.87 ± 0.05 for transition zone, and 0.90 ± 0.04 for whole prostate gland segmentation. For selected studies that used one major MRI vendor, the mean DSCs of each were as follows: General Electric (three of 48 studies), 0.92 ± 0.03; Philips (four of 48 studies), 0.92 ± 0.02; and Siemens (six of 48 studies), 0.91 ± 0.03. Conclusion Deep learning algorithms for prostate MRI segmentation demonstrated accuracy similar to that of expert radiologists despite varying parameters; therefore, future research should shift toward evaluating segmentation robustness and patient outcomes across diverse clinical settings. Keywords: MRI, Genital/Reproductive, Prostate Segmentation, Deep Learning Systematic review registration link: osf.io/nxaev © RSNA, 2024.
PMCID:11294957
PMID: 38568094
ISSN: 2638-6100
CID: 5787682
Streamlining Radiology Workflows Through the Development and Deployment of Automated Microservices
Becker, Anton S; Chaim, Joshua; Vargas, Hebert Alberto
Microservices are a software development approach where an application is structured as a collection of loosely coupled, independently deployable services, each focusing on executing a specific purpose. The development of microservices could have a significant impact on radiology workflows, allowing routine tasks to be automated and improving the efficiency and accuracy of radiologic tasks. This technical report describes the development of several microservices that have been successfully deployed in a tertiary cancer center, resulting in substantial time savings for radiologists and other staff involved in radiology workflows. These microservices include the automatic generation of shift emails, notifying administrative staff and faculty about fellows on rotation, notifying referring physicians about outside examinations, and populating report templates with information from PACS and RIS. The report outlines the common thought process behind developing these microservices, including identifying a problem, connecting various APIs, collecting data in a database, writing a prototype and deploying it, gathering feedback and refining the service, putting it in production, and identifying staff who are in charge of maintaining the service. The report concludes by discussing the benefits and challenges of microservices in radiology workflows, highlighting the importance of multidisciplinary collaboration, interoperability, security, and privacy.
PMID: 38351225
ISSN: 2948-2933
CID: 5635702
Clinical application of bladder MRI and the Vesical Imaging-Reporting and Data System
Panebianco, Valeria; Briganti, Alberto; Boellaard, Thierry N; Catto, James; Comperat, Eva; Efstathiou, Jason; van der Heijden, Antoine G; Giannarini, Gianluca; Girometti, Rossano; Mertens, Laura; Takeuchi, Mitsuru; Muglia, Valdair F; Narumi, Yoshifumi; Novara, Giacomo; Pecoraro, Martina; Roupret, Morgan; Sanguedolce, Francesco; Santini, Daniele; Shariat, Shahrokh F; Simone, Giuseppe; Vargas, Hebert A; Woo, Sungmin; Barentsz, Jelle; Witjes, J Alfred
Diagnostic work-up and risk stratification in patients with bladder cancer before and after treatment must be refined to optimize management and improve outcomes. MRI has been suggested as a non-invasive technique for bladder cancer staging and assessment of response to systemic therapy. The Vesical Imaging-Reporting And Data System (VI-RADS) was developed to standardize bladder MRI image acquisition, interpretation and reporting and enables accurate prediction of muscle-wall invasion of bladder cancer. MRI is available in many centres but is not yet recommended as a first-line test for bladder cancer owing to a lack of high-quality evidence. Consensus-based evidence on the use of MRI-VI-RADS for bladder cancer care is needed to serve as a benchmark for formulating guidelines and research agendas until further evidence from randomized trials becomes available.
PMID: 38036666
ISSN: 1759-4820
CID: 5787662
Body oncologic imaging subspecialty training a curriculum based on the experience in a tertiary cancer center
Becker, Anton S; Das, Jeeban P; Woo, Sungmin; Vilela de Oliveira, Camila; Charbel, Charlotte; Perez-Johnston, Rocio; Vargas, Hebert Alberto
PURPOSE/OBJECTIVE:To describe the structure of a dedicated body oncologic imaging fellowship program. To summarize the numbers and types of cross-sectional imaging examinations reported by fellows. METHODS:The curriculum, training methods, and assessment measures utilized in the program were reviewed and described. An educational retrospective analysis was conducted. Data on the number of examinations interpreted by fellows, breakdown of modalities, and examinations by disease management team (DMT) were collected. RESULTS:A total of 38 fellows completed the fellowship program during the study period. The median number of examinations reported per fellow was 2296 [interquartile range: 2148 - 2534], encompassing all oncology-relevant imaging modalities: CT 721 [646-786], MRI 1158 [1016-1309], ultrasound 256 [209-320] and PET/CT 176 [130-202]. The breakdown of examinations by DMT revealed variations in imaging patterns, with MRIs most frequently interpreted for genitourinary, musculoskeletal, and hepatobiliary cancers, and CTs most commonly for general staging or assessment of nonspecific symptoms. CONCLUSION/CONCLUSIONS:This descriptive analysis may serve as a foundation for the development of similar fellowship programs and the advancement of body oncologic imaging. The volume and diversity of examinations reported by fellows highlights the comprehensive nature of body oncologic imaging.
PMCID:10989997
PMID: 38428254
ISSN: 1872-7727
CID: 5691662