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Pseudo contrastive labeling for predicting IVF embryo developmental potential
Erlich, I; Ben-Meir, A; Har-Vardi, I; Grifo, J; Wang, F; Mccaffrey, C; McCulloh, D; Or, Y; Wolf, L
In vitro fertilization is typically associated with high failure rates per transfer, leading to an acute need for the identification of embryos with high developmental potential. Current methods are tailored to specific times after fertilization, often require expert inspection, and have low predictive power. Automatic methods are challenged by ambiguous labels, clinical heterogeneity, and the inability to utilize multiple developmental points. In this work, we propose a novel method that trains a classifier conditioned on the time since fertilization. This classifier is then integrated over time and its output is used to assign soft labels to pairs of samples. The classifier obtained by training on these soft labels presents a significant improvement in accuracy, even as early as 30Â h post-fertilization. By integrating the classification scores, the predictive power is further improved. Our results are superior to previously reported methods, including the commercial KIDScore-D3 system, and a group of eight senior professionals, in classifying multiple groups of favorable embryos into groups defined as less favorable based on implantation outcomes, expert decisions based on developmental trajectories, and/or genetic tests.
PMCID:8847488
PMID: 35169194
ISSN: 2045-2322
CID: 5163462
HEPARIN, TO CLOT OR NOT: IS IT NEEDED IN OOCYTE RETRIEVAL FLUSH MEDIA? [Meeting Abstract]
Weidenbaum, Emily; Shaw, Jacquelyn; McCaffrey, Caroline; Grifo, James
ISI:000680508800019
ISSN: 0015-0282
CID: 5273562
ORAL DIAZEPAM AS A UTERINE RELAXANT: DOES IT IMPROVE TRANSFER OUTCOMES? [Meeting Abstract]
Kalluru, Shilpa; Shaw, Jacquelyn; Fino, Mary Elizabeth; Grifo, James A.; Licciardi, Frederick L.; Berkeley, Alan S.
ISI:000699951500425
ISSN: 0015-0282
CID: 5273522
HOW LONG CAN YOU GO: DOES LENGTH OF STIMULATION NEEDED TO GENERATE EUPLOID EMBRYOS AFFECT FROZEN EMBRYO TRANSFERS (FET) OUTCOMES? [Meeting Abstract]
Shaw, Jacquelyn; McCaffrey, Caroline; Grifo, James A.; Blakemore, Jennifer K.; Berkeley, Alan S.
ISI:000699951501405
ISSN: 0015-0282
CID: 5273472
NON-TUBAL ECTOPIC (NTE) PREGNANCIES IN ASSISTED REPRODUCTIVE TECHNOLOGY(ART): 10-YEARS OF EXPERIENCE AT A LARGE URBAN UNIVERSITY BASED FERTILITY CENTERY [Meeting Abstract]
Barrett, Francesca; Shaw, Jacquelyn; Blakemore, Jennifer K.; Grifo, James A.
ISI:000680508800013
ISSN: 0015-0282
CID: 5273422
GONADOTROPIN-RELEASING HORMONE AGONIST (GNRH-A) TRIGGER: WILL IT WORK WITH A LEVONORGESTREL (LNG) INTRAUTERINE DEVICE (IUD) IN SITU? [Meeting Abstract]
Shaw, Jacquelyn; Will, Elizabeth; Grifo, James A.; Blakemore, Jennifer K.
ISI:000699951500464
ISSN: 0015-0282
CID: 5273462
A FALSE START: CAN SINGLE PRONUCLEAR ZYGOTES GET BACK ON TRACK? [Meeting Abstract]
Shaw, Jacquelyn; McCulloh, David H.; McCaffrey, Caroline; Grifo, James A.; Blakemore, Jennifer K.
ISI:000699951500319
ISSN: 0015-0282
CID: 5273452
PREIMPLANTATION GENETIC TESTING FOR BRCA: 10 YEARS OF EXPERIENCE AT A LARGE ACADEMIC FERTILITY CENTER. [Meeting Abstract]
Barrett, Francesca; Shaw, Jacquelyn; Besser, Andria G.; Grifo, James A.; Blakemore, Jennifer K.
ISI:000699951501466
ISSN: 0015-0282
CID: 5273482
CHARACTERIZATION OF TELOMERES IN HUMAN ANEUPLOID BLASTOCYSTS [Meeting Abstract]
Wang, F; McCulloh, D H; Wiltshire, A M; Fioravanti, Schaal R; Oh, C; McCaffrey, C; Grifo, J A; Keefe, D L
OBJECTIVE: To compare telomere length (TL) and telomerase gene expression in human euploid and aneuploid blastocysts generated from IVF treatment. MATERIALS AND METHODS: TL and telomerase gene expression were measured in cryopreserved aneuploid (N=115) and euploid (N=4) human blastocysts donated by 26 patients who consented research under approval of IRB study #16-00154. Blastocysts were classified according to number of aneuploid chromosomes (A1-one segmental error, A2-one whole chromosome error, A3-two chromosomal errors and A4- >= 3 chromosomal errors). Genomic DNA and messenger RNA were separated simultaneously from individual blastocysts after thawing in vitrification-warming media. Telomerase reverse transcriptase (TERT) and telomerase RNA component (TERC) mRNA levels were determined by RT-qPCR with GAPDH as internal control, and TL was measured by qPCR with 5s rDNA as internal control. Relative gene expression and TL were calculated by DELTADELTACt method, and GraphPad Prism 8 software was used for statistical analysis.
RESULT(S): TL and telomerase gene expression were not normally distributed, so nonparametric tests were used to compare the medians among groups (Table 1). Median TL, TERTand TERC levels didn't differ by number of chromosome errors nor between aneuploid and euploid groups. Intriguingly, TL, TERT and TERC levels in aneuploid blastocysts tended to be greater compared to euploid blastocysts. TL in blastocysts correlated with telomerase TERT expression (R2 =0.054, P = 0.011), but not TERC expression (R2 =0.0002, P = 0.865).
CONCLUSION(S): To our knowledge, this is the largest study to measure telomere length and telomerase gene expression in human blastocysts. Our data indicated that telomeres are lengthened and telomerase is activated in aneuploid embryos at blastocyst stage. Moreover, telomere length and telomerase gene TERT in human blastocysts correlate regardless of ploidy status. Like cancer cells, TERT is highly expressed in aneuploid blastocysts. IMPACT STATEMENT: Robust TERT expression and telomere maintenance in aneuploid human blastocysts may explain why extended in vitro culture alone is insufficient to cull out aneuploidy embryos during IVF (Table Presented)
EMBASE:638129675
ISSN: 1556-5653
CID: 5250812
FET OUTCOMES DURING THE COVID-19 PANDEMIC [Meeting Abstract]
Chamani, I J; McCulloh, D H; Licciardi, F L; Grifo, J A
OBJECTIVE: There has been significant uncertainty surrounding the COVID-19 pandemic and its effect on human reproduction which resulted in a temporary suspension of ART treatments in early stages of the pandemic. The ACE2 receptor used by the virus to infect pulmonary cells is also found in reproductive organs and has fueled speculation as to whether the disease can be sexually transmitted and whether it can cause infertility. Non-viral issues (e.g., pandemic related psychological stress, alternate methods of communication and interaction, and new clinic procedures) may also worsen outcomes. We sought to determine whether clinical outcomes following the frozen embryo transfer (FET) of a euploid embryo were different during the COVID-19 pandemic in 2020 when compared to prior to the pandemic in 2019. MATERIALS AND METHODS: Patients who tested negative for COVID-19 and underwent FET of a single euploid embryo at NYU Fertility Center in NYC over January 2020 through September 2020 were separated by treatment month and compared with patients from the corresponding month in 2019. Patient's age at cycle start and age at freeze were compared using Student's T-Test. Potential cycle outcomes included intrauterine pregnancy (IUG), biochemical pregnancy (Biochem), and no pregnancy, and outcomes were compared between the two years using contingency Chi Square.
RESULT(S): 1,044 patients were compared over the corresponding months. 558 transfers from 2019 and 486 patients from 2020, with no patients in April of 2020. There were no differences noted in patient's age at cycle start, or age at cryopreservation, between any of the months across the two years. Analysis of outcomes following FET further revealed no statistically significant differences between any of the months over the two years, X2 = 14.64, p > 0.05. Post hoc analyses comparing the combined months of March, April and May, or the combined 9-month periods, were also not statistically significant (X2 = 0.042, p > 0.05; X2 = 1.68, p > 0.05; respectively).
CONCLUSION(S): In patients who tested negative for COVID-19, there were no differences in treatment outcomes following FET's when comparing patients treated during the COVID pandemic with those who were treated prior to the pandemic. IMPACT STATEMENT: Providers and patients can be reassured that with proper testing and sanitizing techniques FET outcomes remained unaffected by the pandemic. (Table Presented)
EMBASE:638129098
ISSN: 1556-5653
CID: 5250992