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Detection of Novel Fusions in Salivary Gland Type Tumors Using a Custom NGS RNA Sequencing Fusion Panel [Meeting Abstract]
Hasan, Hasanain; Hindi, Issa; Zhou, Fang; Jour, George; Liu, Cheng; Brandler, Tamar
ISI:000770361802150
ISSN: 0893-3952
CID: 5243362
Detection of gene fusions, cryptic rearrangements, and gene regulatory interactions in brain tumors by whole-genome Hi-C [Meeting Abstract]
Galbraith, Kristyn; Yang, Yiying; Mohamed, Hussein; Movahed-Ezazi, Misha; Tran, Ivy; Zeck, Briana; Chiriboga, Luis; Sikkink, Kristin; Schmitt, Anthony; Tsirigos, Aristotelis; Jour, George; Snuderl, Matija
ISI:000798368400105
ISSN: 0022-3069
CID: 5525632
Comparison of Fresh Cell Pellets and Cell Blocks for Genomic Profiling of Advanced Cancers in Pleural Effusion Specimens: Promising Preliminary Results from a Validation Study [Meeting Abstract]
Chen, Fei; Kim, Christine; Shen, Guomiao; Feng, Xiaojun; Jour, George; Cotzia, Paolo; Brandler, Tamar; Sun, Wei; Snuderl, Matija; Simsir, Aylin; Park, Kyung
ISI:000770360200230
ISSN: 0023-6837
CID: 5243162
Optimization of a Deep Convolutional Neural Network for Spatial Quantification of Necrosis in Archival Osteosarcoma Cases [Meeting Abstract]
Occidental, Michael; Coudray, Nicolas; Chiriboga, Luis; Tsirigos, Aristotelis; Jour, George
ISI:000770360200052
ISSN: 0023-6837
CID: 5243142
Detection of Novel Fusions in Salivary Gland Type Tumors Using a Custom NGS RNA Sequencing Fusion Panel [Meeting Abstract]
Hasan, Hasanain; Hindi, Issa; Zhou, Fang; Jour, George; Liu, Cheng; Brandler, Tamar
ISI:000770360202150
ISSN: 0023-6837
CID: 5243222
Optimization of a Deep Convolutional Neural Network for Spatial Quantification of Necrosis in Archival Osteosarcoma Cases [Meeting Abstract]
Occidental, Michael; Coudray, Nicolas; Chiriboga, Luis; Tsirigos, Aristotelis; Jour, George
ISI:000770361800053
ISSN: 0893-3952
CID: 5243272
Tubulopapillary Carcinoma of the Breast: A Distinct Morphologic Entity with Molecular and Immunohistochemical Analysis [Meeting Abstract]
Salama, Abeer; Schwartz, Christopher; Zhu, Kelsey; Vasudevaraja, Varshini; Serrano, Jonathan; Jour, George; Park, Kyung; Snuderl, Matija; Cotzia, Paolo; Darvishian, Farbod
ISI:000770361800173
ISSN: 0893-3952
CID: 5243282
Comparison of Fresh Cell Pellets and Cell Blocks for Genomic Profiling of Advanced Cancers in Pleural Effusion Specimens: Promising Preliminary Results from a Validation Study [Meeting Abstract]
Chen, Fei; Kim, Christine; Shen, Guomiao; Feng, Xiaojun; Jour, George; Cotzia, Paolo; Brandler, Tamar; Sun, Wei; Snuderl, Matija; Simsir, Aylin; Park, Kyung
ISI:000770361800231
ISSN: 0893-3952
CID: 5243292
Pigmented Epithelioid Melanocytomas and Their Mimics; Focus on Their Novel Molecular Findings
Bayraktar, Erol C; Jour, George
Pigmented epithelioid melanocytoma (PEM) is a unique tumor with significantly pigmented appearance and indolent behavior; however, it can demonstrate cytological atypia and metastasize to local lymph nodes. Clinical and histomorphological overlap between PEM and its lower or higher-grade mimics can make it difficult to distinguish in certain cases. Genomic, transcriptomic and epigenetic data indicate that PEMs are molecularly distinct entities from other melanocytic neoplasms and melanomas. In addition, methylation studies are emerging as a tool that can be useful in difficult cases. In this review, we focus on the clinical, histopathologic and recent insights in the molecular features of pigmented epithelioid melanocytic melanocytomas and their mimics. We also present a challenging case that was resolved using methylation analysis providing a proof of concept for using epigenetic studies for similar challenging cases.
PMCID:8698474
PMID: 34943205
ISSN: 2079-7737
CID: 5109072
Discordance in Diagnosis of Melanocytic Lesions and Its Impact on Clinical Management
Ronen, Shira; Al-Rohil, Rami N; Keiser, Elizabeth; Jour, George; Nagarajan, Priyadharsini; Tetzlaff, Michael T; Curry, Jonathan L; Ivan, Doina; Middleton, Lavinia P; Torres-Cabala, Carlos A; Gershenwald, Jeffrey E; Aung, Phyu P; Prieto, Victor G
CONTEXT.—/UNASSIGNED:Accurate diagnosis of melanocytic lesions is fundamental for appropriate clinical management. OBJECTIVE.—/UNASSIGNED:To evaluate the degree of discordance, if any, between histopathologic diagnoses of melanocytic lesions at referring institutions and at a tertiary referral cancer center and the potential impact of such discordance on clinical management. DESIGN.—/UNASSIGNED:We retrospectively identified all patients referred to our comprehensive cancer center for evaluation of a melanocytic lesion from January 2010 to January 2011. For each patient, the histopathologic diagnosis from the referring institution was compared with the histopathologic diagnosis from a dermatopathologist at our center. Discordances were classified as major if they resulted in a change in clinical management and minor if they did not. RESULTS.—/UNASSIGNED:A total of 1521 cases were included. The concordance rates were 72.2% (52 of 72) for dysplastic nevus, 75.0% (15 of 20) for all other types of nevi, 91.1% (143 of 157) for melanoma in situ, 96.1% (758 of 789) for invasive melanoma, and 99.6% (478 of 480) for metastatic melanoma. Major discordances were found in 20.2% of cases (307 of 1521), and minor discordances were found in 48.8% of cases (742 of 1521). Compared with the guideline-based treatment recommendation based on the referring-institution diagnosis, the guideline-based treatment recommendation based on the cancer center diagnosis was more extensive in 5.9% (89 of 1521) of patients and less extensive in 5.0% (76 of 1521) of patients. CONCLUSIONS.—/UNASSIGNED:Our findings underscore the importance of secondary histopathologic review of melanocytic lesions by expert dermatopathologists because significant changes in the diagnosis, tumor classification, and/or staging may be identified; thus, resulting in critical changes in recommendations for clinical management.
PMID: 33577643
ISSN: 1543-2165
CID: 4780212