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Characterization of the human SLC30A8 promoter and intronic enhancer
Pound, Lynley D; Sarkar, Suparna A; Cauchi, Stephane; Wang, Yingda; Oeser, James K; Lee, Catherine E; Froguel, Philippe; Hutton, John C; O'Brien, Richard M
Genome-wide association studies have shown that a polymorphic variant in SLC30A8, which encodes zinc transporter-8, is associated with altered susceptibility to type 2 diabetes (T2D). This association is consistent with the observation that glucose-stimulated insulin secretion is decreased in islets isolated from Slc30a8 knockout mice. In this study, immunohistochemical staining was first used to show that SLC30A8 is expressed specifically in pancreatic islets. Fusion gene studies were then used to examine the molecular basis for the islet-specific expression of SLC30A8. The analysis of SLC30A8-luciferase expression in betaTC-3 cells revealed that the proximal promoter region, located between -6154 and -1, relative to the translation start site, was only active in stable but not transient transfections. VISTA analyses identified three regions in the SLC30A8 promoter and a region in SLC30A8 intron 2 that are conserved in the mouse Slc30a8 gene. Additional fusion gene experiments demonstrated that none of these Slc30a8 promoter regions exhibited enhancer activity when ligated to a heterologous promoter whereas the conserved region in SLC30A8 intron 2 conferred elevated reporter gene expression selectively in betaTC-3 but not in alphaTC-6 cells. Finally, the functional effects of a single nucleotide polymorphism (SNP), rs62510556, in this conserved intron 2 enhancer were investigated. Gel retardation studies showed that rs62510556 affects the binding of an unknown transcription factor and fusion gene analyses showed that it modulates enhancer activity. However, genetic analyses suggest that this SNP is not a causal variant that contributes to the association between SLC30A8 and T2D, at least in Europeans.
PMCID:3185167
PMID: 21798992
ISSN: 1479-6813
CID: 2694642
Deletion of the G6pc2 gene encoding the islet-specific glucose-6-phosphatase catalytic subunit-related protein does not affect the progression or incidence of type 1 diabetes in NOD/ShiLtJ mice
Oeser, James K; Parekh, Vrajesh V; Wang, Yingda; Jegadeesh, Naresh K; Sarkar, Suparna A; Wong, Randall; Lee, Catherine E; Pound, Lynley D; Hutton, John C; Van Kaer, Luc; O'Brien, Richard M
OBJECTIVE: Islet-specific glucose-6-phosphatase catalytic subunit-related protein (IGRP), now known as G6PC2, is a major target of autoreactive T cells implicated in the pathogenesis of type 1 diabetes in both mice and humans. This study aimed to determine whether suppression of G6p2 gene expression might therefore prevent or delay disease progression. RESEARCH DESIGN AND METHODS: G6pc2(-/-) mice were generated on the NOD/ShiLtJ genetic background, and glycemia was monitored weekly up to 35 weeks of age to determine the onset and incidence of diabetes. The antigen specificity of CD8(+) T cells infiltrating islets from NOD/ShiLtJ G6pc2(+/+) and G6pc2(-/-) mice at 12 weeks was determined in parallel. RESULTS: The absence of G6pc2 did not affect the time of onset, incidence, or sex bias of type 1 diabetes in NOD/ShiLtJ mice. Insulitis was prominent in both groups, but whereas NOD/ShiLtJ G6pc2(+/+) islets contained CD8(+) T cells reactive to the G6pc2 NRP peptide, G6pc2 NRP-reactive T cells were absent in NOD/ShiLtJ G6pc2(-/-) islets. CONCLUSIONS: These results demonstrate that G6pc2 is an important driver for the selection and expansion of islet-reactive CD8(+) T cells infiltrating NOD/ShiLtJ islets. However, autoreactivity to G6pc2 is not essential for the emergence of autoimmune diabetes. The results remain consistent with previous studies indicating that insulin may be the primary autoimmune target, at least in NOD/ShiLtJ mice.
PMCID:3198073
PMID: 21896930
ISSN: 1939-327x
CID: 2694652
Replication and further characterization of a Type 1 diabetes-associated locus at the telomeric end of the major histocompatibility complex
Baschal, Erin E; Sarkar, Suparna A; Boyle, Theresa A; Siebert, Janet C; Jasinski, Jean M; Grabek, Katharine R; Armstrong, Taylor K; Babu, Sunanda R; Fain, Pamela R; Steck, Andrea K; Rewers, Marian J; Eisenbarth, George S
BACKGROUND: We recently reported an association between Type 1 diabetes and the telomeric major histocompatibility complex (MHC) single nucleotide polymorphism (SNP) rs1233478. As further families have been analyzed in the Type 1 Diabetes Genetics Consortium (T1DGC), we tested replication of the association and, with more data, analyzed haplotypic associations. METHODS: An additional 2717 case and 1315 control chromosomes have been analyzed from the T1DGC, with human leukocyte antigen (HLA) typing and data for 2837 SNPs across the MHC region. RESULTS: We confirmed the association of rs1233478 (new data only: P=2.2E-5, OR=1.4). We also found two additional SNPs nearby that were significantly associated with Type 1 diabetes (new data only rs3131020: P=8.3E-9, OR=0.65; rs1592410: P=2.2E-8, OR=1.5). For studies of Type 1 diabetes in the MHC region, it is critical to account for linkage disequilibrium with the HLA genes. Logistic regression analysis of these new data indicated that the effects of rs3131020 and rs1592410 on Type 1 diabetes risk are independent of HLA alleles (rs3131020: P=2.3E-3, OR=0.73; rs1592410: P=2.1E-3, OR=1.4). Haplotypes of 12 SNPs (including the three highly significant SNPs) stratify diabetes risk (high risk, protective, and neutral), with high-risk haplotypes limited to approximately 20,000 bp in length. The 20,000-bp region is telomeric of the UBD gene and contains LOC729653, a hypothetical gene. CONCLUSIONS: We believe that polymorphisms of the telomeric MHC locus LOC729653 may confer risk for Type 1 diabetes.
PMCID:3610173
PMID: 21631897
ISSN: 1753-0407
CID: 2694632
The pancreatic islet beta-cell-enriched transcription factor Pdx-1 regulates Slc30a8 gene transcription through an intronic enhancer
Pound, Lynley D; Hang, Yan; Sarkar, Suparna A; Wang, Yingda; Milam, Laurel A; Oeser, James K; Printz, Richard L; Lee, Catherine E; Stein, Roland; Hutton, John C; O'Brien, Richard M
The SLC30A8 gene encodes the zinc transporter ZnT-8, which provides zinc for insulin-hexamer formation. Genome-wide association studies have shown that a polymorphic variant in SLC30A8 is associated with altered susceptibility to Type 2 diabetes and we recently reported that glucose-stimulated insulin secretion is decreased in islets isolated from Slc30a8-knockout mice. The present study examines the molecular basis for the islet-specific expression of Slc30a8. VISTA analyses identified two conserved regions in Slc30a8 introns 2 and 3, designated enhancers A and B respectively. Transfection experiments demonstrated that enhancer B confers elevated fusion gene expression in both betaTC-3 cells and alphaTC-6 cells. In contrast, enhancer A confers elevated fusion gene expression selectively in betaTC-3 and not alphaTC-6 cells. These data suggest that enhancer A is an islet beta-cell-specific enhancer and that the mechanisms controlling Slc30a8 expression in alpha- and beta-cells are overlapping, but distinct. Gel retardation and ChIP (chromatin immunoprecipitation) assays revealed that the islet-enriched transcription factor Pdx-1 binds enhancer A in vitro and in situ respectively. Mutation of two Pdx-1-binding sites in enhancer A markedly reduces fusion gene expression suggesting that this factor contributes to Slc30a8 expression in beta-cells, a conclusion consistent with developmental studies showing that restriction of Pdx-1 to pancreatic islet beta-cells correlates with the induction of Slc30a8 gene expression and ZnT-8 protein expression in vivo.
PMCID:4130494
PMID: 20942803
ISSN: 1470-8728
CID: 2694622
Leveraging Biological Knowledge To Identify Novel Endocrine Replication Pathway: Role of Cyclin D1, Hdac2 and Runx1 [Meeting Abstract]
Sarkar, Suparna A; Lee, Catherine E; Tipney, Hannah; Baumgartne, William A; Hunter, Larry; Hutton, John C
ISI:000278844602311
ISSN: 0012-1797
CID: 2694472
Zinc transporter 8 (SLC30A8), an insulin secretory granule protein with links to the pathogenesis of type 1 and type 2 diabetes [Meeting Abstract]
Hutton, John C; Wenzlau, Janet M; O'Brien, Richard; Gardner, Thomas; Kawasaki, Eiji; Zhou, Zhiguang; Zeigler, Anette G; Sheridan, Leah; Sarkar, Suparna; Davidson, Howard W
ISI:000279742600110
ISSN: 0918-8959
CID: 2694482
Chemokine Signatures in Pathogenesis and Prevention of Type 1 Diabetes [Meeting Abstract]
Eberlein, Jens; Victorino, Francisco; Nguyen, Tom; Sarkar, Suparna; Homann, Dirk
ISI:000277953700365
ISSN: 1521-6616
CID: 2694462
Deletion of the mouse Slc30a8 gene encoding zinc transporter-8 results in impaired insulin secretion
Pound, Lynley D; Sarkar, Suparna A; Benninger, Richard K P; Wang, Yingda; Suwanichkul, Adisak; Shadoan, Melanie K; Printz, Richard L; Oeser, James K; Lee, Catherine E; Piston, David W; McGuinness, Owen P; Hutton, John C; Powell, David R; O'Brien, Richard M
The Slc30a8 gene encodes the islet-specific zinc transporter ZnT-8, which provides zinc for insulin-hexamer formation. Polymorphic variants in amino acid residue 325 of human ZnT-8 are associated with altered susceptibility to Type 2 diabetes and ZnT-8 autoantibody epitope specificity changes in Type 1 diabetes. To assess the physiological importance of ZnT-8, mice carrying a Slc30a8 exon 3 deletion were analysed histologically and phenotyped for energy metabolism and pancreatic hormone secretion. No gross anatomical or behavioural changes or differences in body weight were observed between wild-type and ZnT-8-/- mice, and ZnT-8-/- mouse islets were indistinguishable from wild-type in terms of their numbers, size and cellular composition. However, total zinc content was markedly reduced in ZnT-8-/- mouse islets, as evaluated both by Timm's histochemical staining of pancreatic sections and direct measurements in isolated islets. Blood glucose levels were unchanged in 16-week-old, 6 h fasted animals of either gender; however, plasma insulin concentrations were reduced in both female (approximately 31%) and male (approximately 47%) ZnT-8-/- mice. Intraperitoneal glucose tolerance tests demonstrated no impairment in glucose clearance in male ZnT-8-/- mice, but glucose-stimulated insulin secretion from isolated islets was reduced approximately 33% relative to wild-type littermates. In summary, Slc30a8 gene deletion is accompanied by a modest impairment in insulin secretion without major alterations in glucose metabolism.
PMCID:2929527
PMID: 19450229
ISSN: 1470-8728
CID: 2694612
DNA microarray analysis for the identification of innate immune pathways implicated in virus-induced autoimmune diabetes
Wolter, Travis R; Wong, Randall; Sarkar, Suparna A; Zipris, Danny
We have recently demonstrated that upregulation of the innate immune system plays a key role in KRV-induced autoimmune diabetes in the BBDR rat, but the nature of this proinflammatory reaction has not yet been addressed. Using a DNA microarray approach, we identified 569 genes upregulated in pancreatic lymph nodes following virus infection. Among the most highly activated are IL-1 pathways, IFN-gamma-induced chemokines, and genes associated with interferon production and signaling. Ex vivo and in vitro studies indicate that KRV upregulates proinflammatory cytokines and chemokines in B lymphocytes and Flt-3L-induced plasmacytoid DCs (pDCs). Finally, in contrast to KRV, infection of BBDR rats with the non-diabetogenic KRV homologue H-1 parvovirus fails to induce a robust proinflammatory response in pancreatic lymph nodes. Our findings provide new insights into KRV-induced innate immune pathways that may play a role in early mechanisms leading to islet inflammation and diabetes.
PMID: 19328037
ISSN: 1521-7035
CID: 2694602
Effect of Over-Expression of Adv-Indoleamine 2, 3 Dioxygenase in Human Islets [Meeting Abstract]
Sarkar, Suparna A; Lee, Catherine; Patel, Champa; Hutton, John C
ISI:000266352601507
ISSN: 0012-1797
CID: 2694452