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T2-FLAIR Mismatch, an Imaging Biomarker for IDH and 1p/19q Status in Lower Grade Gliomas: A TCGA/TCIA Project

Patel, Sohil H; Poisson, Laila M; Brat, Daniel J; Zhou, Yueren; Cooper, Lee; Snuderl, Matija; Thomas, Cheddhi; Franceschi, Ana M; Griffith, Brent; Flanders, Adam; Golfinos, John G; Chi, Andrew S; Jain, Rajan
PURPOSE: Lower grade gliomas (WHO grade II/III) have been classified into clinically-relevant molecular subtypes based on IDH and 1p/19q mutation status. The purpose was to investigate whether T2/FLAIR MRI features could distinguish between lower grade glioma molecular subtypes

Experimental Design: MRI scans from the TCGA/TCIA lower grade glioma database (n=125) were evaluated by 2 independent neuroradiologists to assess: 1) presence/absence of homogenous signal on T2WI; 2) presence/absence of "T2-FLAIR mismatch" sign; 3) sharp or indistinct lesion margins; 4) presence/absence of peritumoral edema. Metrics with moderate-substantial agreement underwent consensus review, and were correlated with glioma molecular subtypes. Somatic mutation, DNA copy number, DNA methylation, gene expression, and protein array data from the TCGA lower grade glioma database were analyzed for molecular-radiographic associations. A separate institutional cohort (n=82) was analyzed to validate the T2-FLAIR mismatch sign.

Results: Among TCGA/TCIA cases, inter-reader agreement was calculated for lesion homogeneity (k=0.234 [0.111-0.358]), T2-FLAIR mismatch sign (k=0.728 [0.538-0.918]), lesion margins (k=0.292 [0.135-0.449]), and peritumoral edema (k=0.173 [0.096-0.250]). All 15 cases that were positive for the T2-FLAIR mismatch sign were IDH-mutant, 1p/19q-non-codeleted tumors (p<0.0001; PPV=100%, NPV=54%). Analysis of the validation cohort demonstrated substantial inter-reader agreement for the T2-FLAIR mismatch sign (k=0.747 [0.536 - 0.958]); all 10 cases positive for the T2-FLAIR mismatch sign were IDH-mutant, 1p/19q non-codeleted tumors (p<0.00001; PPV=100%, NPV=76%).

Conclusion: Among lower grade gliomas, T2-FLAIR mismatch sign represents a highly specific imaging biomarker for the IDH-mutant, 1p/19q-non-codeleted molecular subtype.
PMID: 28751449
ISSN: 1078-0432
CID: 2647482

Filling A Void: Creating a Systematic Approach to Examining Post Mortem Brains of Unexpected Child Deaths [Meeting Abstract]

Faustin, Arline; Reichard, Ross; Thomas, Cheddhi; Shepherd, Timothy; O'Connell, Brooke; Crandall, Laura; McGuone, Declan; William, Christopher; Snuderl, Matija; Wisniewski, Thomas; Devinsky, Orrin
ISI:000404906900140
ISSN: 1554-6578
CID: 2645132

A genome-wide analysis of rapidly progressive IDH-mutated astrocytomas [Meeting Abstract]

Richardson, Timothy; Snuderl, Matija; Serrano, Jonathan; Karajannis, Matthias; Heguy, Adriana; Oliver, Dwight; Raisanen, Jack; Maher, Elizabeth; Pan, Edward; Barnett, Samuel; Cai, Chunyu; Habib, Amyn; Bachoo, Robert; Hatanpaa, Kimmo
ISI:000404906900098
ISSN: 1554-6578
CID: 2645102

Global reduction in H3K27me3 is a molecular surrogate for pediatric posterior fossa- group A ependymomas [Meeting Abstract]

Panwalkar, Pooja; Clark, Jonathan; Ramaswamy, Vijay; Hawes, Debra; Yang, Fuseng; Dunham, Christopher; Yip, Stephen; Hukin, Juliette; Sun, Yilun; Schipper, Matthew; Margol, Ashley; Pekmezci, Melike; Chung, Chan; Banda, Adam; Curry, Sarah J; Santi, Mariarita; Rodriguez, Fausto; Snuderl, Matija; Saratsis, Amanda M; Horbinski, Craig; Kool, Marcel; Pfister, Stephan M; Taylor, Michael D; Hawkins, Cynthia; Korshunov, Andrey; Judkins, Alexander R; Venneti, Sriram
ISI:000404906900033
ISSN: 1554-6578
CID: 2645082

Therapeutic and Prognostic Implications of BRAF V600E in Pediatric Low-Grade Gliomas

Lassaletta, Alvaro; Zapotocky, Michal; Mistry, Matthew; Ramaswamy, Vijay; Honnorat, Marion; Krishnatry, Rahul; Guerreiro Stucklin, Ana; Zhukova, Nataliya; Arnoldo, Anthony; Ryall, Scott; Ling, Catriona; McKeown, Tara; Loukides, Jim; Cruz, Ofelia; de Torres, Carmen; Ho, Cheng-Ying; Packer, Roger J; Tatevossian, Ruth; Qaddoumi, Ibrahim; Harreld, Julie H; Dalton, James D; Mulcahy-Levy, Jean; Foreman, Nicholas; Karajannis, Matthias A; Wang, Shiyang; Snuderl, Matija; Nageswara Rao, Amulya; Giannini, Caterina; Kieran, Mark; Ligon, Keith L; Garre, Maria Luisa; Nozza, Paolo; Mascelli, Samantha; Raso, Alessandro; Mueller, Sabine; Nicolaides, Theodore; Silva, Karen; Perbet, Romain; Vasiljevic, Alexandre; Faure Conter, Cecile; Frappaz, Didier; Leary, Sarah; Crane, Courtney; Chan, Aden; Ng, Ho-Keung; Shi, Zhi-Feng; Mao, Ying; Finch, Elizabeth; Eisenstat, David; Wilson, Bev; Carret, Anne Sophie; Hauser, Peter; Sumerauer, David; Krskova, Lenka; Larouche, Valerie; Fleming, Adam; Zelcer, Shayna; Jabado, Nada; Rutka, James T; Dirks, Peter; Taylor, Michael D; Chen, Shiyi; Bartels, Ute; Huang, Annie; Ellison, David W; Bouffet, Eric; Hawkins, Cynthia; Tabori, Uri
Purpose BRAF V600E is a potentially highly targetable mutation detected in a subset of pediatric low-grade gliomas (PLGGs). Its biologic and clinical effect within this diverse group of tumors remains unknown. Patients and Methods A combined clinical and genetic institutional study of patients with PLGGs with long-term follow-up was performed (N = 510). Clinical and treatment data of patients with BRAF V600E mutated PLGG (n = 99) were compared with a large international independent cohort of patients with BRAF V600E mutated-PLGG (n = 180). Results BRAF V600E mutation was detected in 69 of 405 patients (17%) with PLGG across a broad spectrum of histologies and sites, including midline locations, which are not often routinely biopsied in clinical practice. Patients with BRAF V600E PLGG exhibited poor outcomes after chemotherapy and radiation therapies that resulted in a 10-year progression-free survival of 27% (95% CI, 12.1% to 41.9%) and 60.2% (95% CI, 53.3% to 67.1%) for BRAF V600E and wild-type PLGG, respectively ( P < .001). Additional multivariable clinical and molecular stratification revealed that the extent of resection and CDKN2A deletion contributed independently to poor outcome in BRAF V600E PLGG. A similar independent role for CDKN2A and resection on outcome were observed in the independent cohort. Quantitative imaging analysis revealed progressive disease and a lack of response to conventional chemotherapy in most patients with BRAF V600E PLGG. Conclusion BRAF V600E PLGG constitutes a distinct entity with poor prognosis when treated with current adjuvant therapy.
PMCID:5791837
PMID: 28727518
ISSN: 1527-7755
CID: 2640512

Endothelium-Independent Primitive Myxoid Vascularization Creates Invertebrate-Like Channels to Maintain Blood Supply in Optic Gliomas

Snuderl, Matija; Zhang, Guoan; Wu, Pamela; Jennings, Tara S; Shroff, Seema; Ortenzi, Valerio; Jain, Rajan; Cohen, Benjamin; Reidy, Jason J; Dushay, Mitchell S; Wisoff, Jeffrey H; Harter, David H; Karajannis, Matthias A; Fenyo, David; Neubert, Thomas A; Zagzag, David
Optic gliomas are brain tumors characterized by slow growth, progressive loss of vision, and limited therapeutic options. Optic gliomas contain various amounts of myxoid matrix, which can represent most of the tumor mass. We sought to investigate biological function and protein structure of the myxoid matrix in optic gliomas to identify novel therapeutic targets. We reviewed histological features and clinical imaging properties, analyzed vasculature by immunohistochemistry and electron microscopy, and performed liquid chromatography-mass spectrometry on optic gliomas, which varied in the amount of myxoid matrix. We found that although subtypes of optic gliomas are indistinguishable on imaging, the microvascular network of pilomyxoid astrocytoma, a subtype of optic glioma with abundant myxoid matrix, is characterized by the presence of endothelium-free channels in the myxoid matrix. These tumors show normal perfusion by clinical imaging and lack histological evidence of hemorrhage organization or thrombosis. The myxoid matrix is composed predominantly of the proteoglycan versican and its linking protein, a vertebrate hyaluronan and proteoglycan link protein 1. We propose that pediatric optic gliomas can maintain blood supply without endothelial cells by using invertebrate-like channels, which we termed primitive myxoid vascularization. Enzymatic targeting of the proteoglycan versican/hyaluronan and proteoglycan link protein 1 rich myxoid matrix, which is in direct contact with circulating blood, can provide novel therapeutic avenues for optic gliomas of childhood.
PMCID:5530906
PMID: 28606795
ISSN: 1525-2191
CID: 2595022

LOW-GRADE ASTROCYTOMA CORE MUTATIONS IN IDH1, P53 AND ATRX COOPERATE TO BLOCK DIFFERENTIATION OF HUMAN NEURAL STEM CELLS VIA EPIGENETIC REPRESSION OF SOX2 [Meeting Abstract]

Modrek, Aram; Golub, Danielle; Khan, Themasap; Prado, Jod; Bowman, Christopher; Deng, Jingjing; Zhang, Guoan; Rocha, Pedro; Raviram, Ramya; Lazaris, Harris; Kader, Michael; Dhaliwal, Joravar; Chi, Andrew; Golfinos, John; Tsirigos, Aristotelis; Zagzag, David; Snuderl, Matija; Skok, Jane; Neubert, Thomas; Placantonakis, Dimitris
ISI:000402766800146
ISSN: 1523-5866
CID: 2591472

BIOCHEMICAL COMPOSITION AND BIOLOGICAL FUNCTION OF MYXOID MATRIX IN OPTIC GLIOMAS [Meeting Abstract]

Snuderl, Matija; Zhang, Guoan; Wu, Pamela; Jennings, Tara; Shroff, Seema; Ortenzi, Valerio; Jain, Rajan; Cohen, Benjamin; Reidy, Jason; Dushay, Mitchell; Wisoff, Jeffrey; Harter, David; Karajannis, Matthias; Fenyo, David; Neubert, Thomas; Zagzag, David
ISI:000402766800137
ISSN: 1523-5866
CID: 2591462

PROGRAMMED DEATH LIGAND 1 EXPRESSION AND TUMOR INFILTRATING LYMPHOCYTES IN TUMORS ASSOCIATED WITH NEUROFIBROMATOSIS TYPE 1 AND 2 [Meeting Abstract]

Wang, Shiyang; Liechty, Benjamin; Patel, Seema; Weber, Jeffrey; Snuderl, Matija; Karajannis, Matthias
ISI:000402766800128
ISSN: 1523-5866
CID: 2591452

HIGH FREQUENCY OF PROGRAMMED DEATH LIGAND 1 EXPRESSION IN PEDIATRIC CENTRAL NERVOUS SYSTEM TUMORS [Meeting Abstract]

Sherani, Farha; Liechty, Benjamin; Snuderl, Matija; Gardner, Sharon
ISI:000402766800117
ISSN: 1523-5866
CID: 2591442