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Artificial Intelligence for MR Image Reconstruction: An Overview for Clinicians
Lin, Dana J; Johnson, Patricia M; Knoll, Florian; Lui, Yvonne W
Artificial intelligence (AI) shows tremendous promise in the field of medical imaging, with recent breakthroughs applying deep-learning models for data acquisition, classification problems, segmentation, image synthesis, and image reconstruction. With an eye towards clinical applications, we summarize the active field of deep-learning-based MR image reconstruction. We review the basic concepts of how deep-learning algorithms aid in the transformation of raw k-space data to image data, and specifically examine accelerated imaging and artifact suppression. Recent efforts in these areas show that deep-learning-based algorithms can match and, in some cases, eclipse conventional reconstruction methods in terms of image quality and computational efficiency across a host of clinical imaging applications, including musculoskeletal, abdominal, cardiac, and brain imaging. This article is an introductory overview aimed at clinical radiologists with no experience in deep-learning-based MR image reconstruction and should enable them to understand the basic concepts and current clinical applications of this rapidly growing area of research across multiple organ systems.
PMID: 32048372
ISSN: 1522-2586
CID: 4304412
The transformation of patient-clinician relationships with AI-based medical advice
Nov, Oded; Aphinyanaphongs, Yindalon; Lui, Yvonne W.; Mann, Devin; Porfiri, Maurizio; Riedl, Mark; Rizzo, John Ross; Wiesenfeld, Batia
The transformation of patient-clinician relationships with AI-based medical advice is discussed. many new tools are based on entirely new "˜black-box"™ AI-based technologies, whose inner workings are likely not fully understood by patients or clinicians. Most patients with Type 1 diabetes now use continuous glucose monitors and insulin pumps to tightly manage their disease. Their clinicians carefully review the data streams from both devices to recommend dosage adjustments. Recently new automated recommender systems to monitor and analyze food intake, insulin doses, physical activity, and other factors influencing glucose levels, and provide data-intensive, AI-based recommendations on how to titrate the regimen, are in different stages of FDA approval using "˜black box"™ technology, which is an alluring proposition for a clinical scenario that requires identification of meaningful patterns in complex and voluminous data.
SCOPUS:85101579091
ISSN: 0001-0782
CID: 4832842
Training a neural network for Gibbs and noise removal in diffusion MRI
Muckley, Matthew J; Ades-Aron, Benjamin; Papaioannou, Antonios; Lemberskiy, Gregory; Solomon, Eddy; Lui, Yvonne W; Sodickson, Daniel K; Fieremans, Els; Novikov, Dmitry S; Knoll, Florian
PURPOSE/OBJECTIVE:To develop and evaluate a neural network-based method for Gibbs artifact and noise removal. METHODS:A convolutional neural network (CNN) was designed for artifact removal in diffusion-weighted imaging data. Two implementations were considered: one for magnitude images and one for complex images. Both models were based on the same encoder-decoder structure and were trained by simulating MRI acquisitions on synthetic non-MRI images. RESULTS:Both machine learning methods were able to mitigate artifacts in diffusion-weighted images and diffusion parameter maps. The CNN for complex images was also able to reduce artifacts in partial Fourier acquisitions. CONCLUSIONS:The proposed CNNs extend the ability of artifact correction in diffusion MRI. The machine learning method described here can be applied on each imaging slice independently, allowing it to be used flexibly in clinical applications.
PMID: 32662910
ISSN: 1522-2594
CID: 4528102
An artificial intelligence system for predicting the deterioration of COVID-19 patients in the emergency department [PrePrint]
Shamout, Farah E; Shen, Yiqiu; Wu, Nan; Kaku, Aakash; Park, Jungkyu; Makino, Taro; Jastrzębski, Stanisław; Wang, Duo; Zhang, Ben; Dogra, Siddhant; Cao, Meng; Razavian, Narges; Kudlowitz, David; Azour, Lea; Moore, William; Lui, Yvonne W; Aphinyanaphongs, Yindalon; Fernandez-Granda, Carlos; Geras, Krzysztof J
During the COVID-19 pandemic, rapid and accurate triage of patients at the emergency department is critical to inform decision-making. We propose a data-driven approach for automatic prediction of deterioration risk using a deep neural network that learns from chest X-ray images, and a gradient boosting model that learns from routine clinical variables. Our AI prognosis system, trained using data from 3,661 patients, achieves an AUC of 0.786 (95% CI: 0.742-0.827) when predicting deterioration within 96 hours. The deep neural network extracts informative areas of chest X-ray images to assist clinicians in interpreting the predictions, and performs comparably to two radiologists in a reader study. In order to verify performance in a real clinical setting, we silently deployed a preliminary version of the deep neural network at NYU Langone Health during the first wave of the pandemic, which produced accurate predictions in real-time. In summary, our findings demonstrate the potential of the proposed system for assisting front-line physicians in the triage of COVID-19 patients.
PMCID:7418753
PMID: 32793769
ISSN: 2331-8422
CID: 4556742
How to Implement AI in the Clinical Enterprise: Opportunities and Lessons Learned
Lui, Yvonne W; Geras, Krzysztof; Block, K Tobias; Parente, Marc; Hood, Joseph; Recht, Michael P
PMID: 33153543
ISSN: 1558-349x
CID: 4671212
Using Deep Learning to Accelerate Knee MRI at 3T: Results of an Interchangeability Study
Recht, Michael P; Zbontar, Jure; Sodickson, Daniel K; Knoll, Florian; Yakubova, Nafissa; Sriram, Anuroop; Murrell, Tullie; Defazio, Aaron; Rabbat, Michael; Rybak, Leon; Kline, Mitchell; Ciavarra, Gina; Alaia, Erin F; Samim, Mohammad; Walter, William R; Lin, Dana; Lui, Yvonne W; Muckley, Matthew; Huang, Zhengnan; Johnson, Patricia; Stern, Ruben; Zitnick, C Lawrence
OBJECTIVE:Deep Learning (DL) image reconstruction has the potential to disrupt the current state of MR imaging by significantly decreasing the time required for MR exams. Our goal was to use DL to accelerate MR imaging in order to allow a 5-minute comprehensive examination of the knee, without compromising image quality or diagnostic accuracy. METHODS:A DL model for image reconstruction using a variational network was optimized. The model was trained using dedicated multi-sequence training, in which a single reconstruction model was trained with data from multiple sequences with different contrast and orientations. Following training, data from 108 patients were retrospectively undersampled in a manner that would correspond with a net 3.49-fold acceleration of fully-sampled data acquisition and 1.88-fold acceleration compared to our standard two-fold accelerated parallel acquisition. An interchangeability study was performed, in which the ability of 6 readers to detect internal derangement of the knee was compared for the clinical and DL-accelerated images. RESULTS:The study demonstrated a high degree of interchangeability between standard and DL-accelerated images. In particular, results showed that interchanging the sequences would result in discordant clinical opinions no more than 4% of the time for any feature evaluated. Moreover, the accelerated sequence was judged by all six readers to have better quality than the clinical sequence. CONCLUSIONS:An optimized DL model allowed for acceleration of knee images which performed interchangeably with standard images for the detection of internal derangement of the knee. Importantly, readers preferred the quality of accelerated images to that of standard clinical images.
PMID: 32755163
ISSN: 1546-3141
CID: 4557132
Medical Imaging and Privacy in the Era of Artificial Intelligence: Myth, Fallacy, and the Future
Lotan, E; Tschider, C; Sodickson, D K; Caplan, A; Bruno, M; Zhang, B; Lui, Yvonne W
PMID: 32360449
ISSN: 1558-349x
CID: 4439052
MR Susceptibility Imaging with a Short TE (MR-SISET): A Clinically Feasible Technique to Resolve Thalamic Nuclei
Chung, S; Storey, P; Shepherd, T M; Lui, Y W
The thalamus consists of several functionally distinct nuclei, some of which serve as targets for functional neurosurgery. Visualization of such nuclei is a major challenge due to their low signal contrast on conventional imaging. We introduce MR susceptibility imaging with a short TE, leveraging susceptibility differences among thalamic nuclei, to automatically delineate 15 thalamic subregions. The technique has the potential to enable direct targeting of thalamic nuclei for functional neurosurgical guidance.
PMID: 32675340
ISSN: 1936-959x
CID: 4529162
Artificial Intelligence in Neuroradiology: Current Status and Future Directions
Lui, Y W; Chang, P D; Zaharchuk, G; Barboriak, D P; Flanders, A E; Wintermark, M; Hess, C P; Filippi, C G
Fueled by new techniques, computational tools, and broader availability of imaging data, artificial intelligence has the potential to transform the practice of neuroradiology. The recent exponential increase in publications related to artificial intelligence and the central focus on artificial intelligence at recent professional and scientific radiology meetings underscores the importance. There is growing momentum behind leveraging artificial intelligence techniques to improve workflow and diagnosis and treatment and to enhance the value of quantitative imaging techniques. This article explores the reasons why neuroradiologists should care about the investments in new artificial intelligence applications, highlights current activities and the roles neuroradiologists are playing, and renders a few predictions regarding the near future of artificial intelligence in neuroradiology.
PMID: 32732276
ISSN: 1936-959x
CID: 4606312
COVID-19 -associated Diffuse Leukoencephalopathy and Microhemorrhages
Radmanesh, Alireza; Derman, Anna; Lui, Yvonne W; Raz, Eytan; Loh, John P; Hagiwara, Mari; Borja, Maria J; Zan, Elcin; Fatterpekar, Girish M
Coronavirus disease 2019 (COVID-19) has been reported in association with a variety of brain imaging findings such as ischemic infarct, hemorrhage, and acute hemorrhagic necrotizing encephalopathy. Here, we report brain imaging features in 11 critically ill COVID-19 patients with persistently depressed mental status who underwent MRI between April 5-25, 2020 at our institution. These features include, 1) Confluent T2 hyperintensity and mild restricted diffusion in bilateral supratentorial deep and subcortical white matter (in 10 of 11 patients), and 2) multiple punctate microhemorrhages in juxtacortical and callosal white matter (in 7 of 11 patients). We also discuss potential pathogeneses.
PMID: 32437314
ISSN: 1527-1315
CID: 4444582