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Free-breathing fat and R 2 * quantification in the liver using a stack-of-stars multi-echo acquisition with respiratory-resolved model-based reconstruction

Schneider, Manuel; Benkert, Thomas; Solomon, Eddy; Nickel, Dominik; Fenchel, Matthias; Kiefer, Berthold; Maier, Andreas; Chandarana, Hersh; Block, Kai Tobias
PMID: 32301168
ISSN: 1522-2594
CID: 4383802

MR elastography, T1 and T2 relaxometry of liver: role in noninvasive assessment of liver function and portal hypertension

Hoffman, David H; Ayoola, Abimbola; Nickel, Dominik; Han, Fei; Chandarana, Hersh; Babb, James; Shanbhogue, Krishna Prasad
PURPOSE/OBJECTIVE:To evaluate the correlation between liver stiffness as measured on MR elastography and T1 and T2 relaxation times from T1 and T2 mapping with clinical parameters of liver disease, including the MELD score, MELD-Na and ALBI grade, and endoscopically visible esophageal varices. MATERIALS AND METHODS/METHODS:223 patients with known or suspected liver disease underwent MRI of the liver with T1 mapping (Look-Locker sequence) and 2D SE-EPI MR elastography (MRE) sequences. 139 of these patients also underwent T2 mapping with radial T2 FS sequence. Two readers measured liver stiffness, T1 relaxation times and T2 relaxation times, and assessed qualitative features such as presence or absence of cirrhosis, ascites, spleen length, and varices on conventional MRI images. A third reader collected the clinical data (MELD score, MELD-Na Score, ALBI grade, and results of endoscopy in 78 patients). RESULTS:Significant moderate correlation was found between MELD score and all three imaging techniques for both readers (MRE, r = 0.35 and 0.28; T1 relaxometry, r = 0.30 and 0.29; T2 relaxometry, r = 0.45, and 0.37 for reader 1 and reader 2 respectively). Correlation with MELD-Na score was even higher (MRE, r = 0.49 and 0.40; T1, r = 0.45 and 0.41; T2, r = 0.47 and 0.35 for reader 1 and reader 2 respectively). Correlations between MRE and ALBI grade was significant and moderate for both readers: r = 0.39 and 0.37, higher than T1 relaxometry (r = 0.22 and 0.20) and T2 relaxometry (r = 0.17, and r = 0.24). Significant moderate correlations were found for both readers between MRE and the presence of varices on endoscopy (r = 0.28 and 0.30). MRE and T1 relaxometry were significant predictors of varices at endoscopy for both readers (MRE AUC 0.923 and 0.873; T1 relaxometry AUC = 0.711 and 0.675 for reader 1 and reader 2 respectively). Cirrhotic morphology (AUC = 0.654), spleen length (AUC = 0.610) and presence of varices in the upper abdomen on MRI (AUC of 0.693 and 0.595) were all significant predictors of endoscopic varices. Multivariable logistic regression model identified that spleen length and liver MRE were significant independent predictors of endoscopic varices for both readers. CONCLUSION/CONCLUSIONS:MR elastography, T1 and T2 relaxometry demonstrated moderate positive correlation with the MELD score and MELD-Na Score. Correlation between MRE and ALBI grade was superior to T1 and T2 relaxometry methods. MRE performed better than T1 and T2 relaxometry to predict the presence of varices at endoscopy. On multivariate analyses, spleen length and MRE were the only two significant independent predictors of endoscopic varices.
PMID: 32274552
ISSN: 2366-0058
CID: 4377742

Volumetric multicomponent T1ρ relaxation mapping of the human liver under free breathing at 3T

Sharafi, Azadeh; Baboli, Rahman; Zibetti, Marcelo; Shanbhogue, Krishna; Olsen, Sonja; Block, Tobias; Chandarana, Hersh; Regatte, Ravinder
PURPOSE/OBJECTIVE:-RAVE) and to evaluate the multi relaxation components in the liver of healthy controls and chronic liver disease (CLD) patients. METHODS:components among patients (n = 3) and a control group (n = 10). RESULTS:relaxation time measurement relative to the reference on 2 different scanners. The coefficient of variation for test-retest scans performed on the same scanner was 5.7% and 2.4% for scans performed on 2 scanners. The comparison between healthy controls and CLD patients showed a significant difference (P < .05) in mono relaxation time (P = .002), stretched-exponential relaxation parameter (P = .04). The Akaike information criteria C criterion showed 2.53 ± 0.9% (2.3 ± 0.3% for CLD) of the voxels are bi-exponential while in 65.3 ± 5.8% (81.2 ± 0.06% for CLD) of the liver voxels, the stretched-exponential model was preferred. CONCLUSION/CONCLUSIONS:assessment of the liver during free breathing and can distinguish between healthy volunteers and CLD patients.
PMID: 31724246
ISSN: 1522-2594
CID: 4185622

T1 mapping, T2 mapping and MR elastography of the liver for detection and staging of liver fibrosis

Hoffman, David H; Ayoola, Abimbola; Nickel, Dominik; Han, Fei; Chandarana, Hersh; Shanbhogue, Krishna Prasad
PURPOSE/OBJECTIVE:To compare liver stiffness measurements obtained from MR elastography with liver T1 relaxation times obtained from T1 mapping and T2 relaxation times obtained from T2 mapping for detection and staging of liver fibrosis. MATERIALS AND METHODS/METHODS:223 patients with known or suspected liver disease underwent MRI of the liver with T1 mapping (Look-Locker sequence) and 2D SE-EPI MR elastography (MRE) sequences. 139 of these patients also underwent T2 mapping with radial T2 TSE sequence. Two readers (R1 & R2) measured liver stiffness, T1 relaxation times and T2 relaxation times. T1 and T2 times were correlated with stiffness measurements. ROC analysis was used to compare the performance of both techniques in discriminating fibrosis stage in 23 patients who underwent liver biopsy. RESULTS:For each reader there was significant moderate positive correlation between liver MRE and liver T1 mapping (r = 0.49 and 0.36). There was significant moderate positive correlation between liver T2 mapping and each of MRE and T1 mapping for one of the readers (r = 0.40 and 0.27). AUC for differentiating early (F0-F2) from advanced (F3-F4) fibrosis in biopsied patients was 0.975 (R1) and 0.925 (R2) for MRE, 0.671 (R1) and 0.642 (R2) for T1 mapping and 0.671 (R1) and 0.743 (R2) for T2 mapping. Inter-reader agreement was good for MRE (ICC = 0.84) substantial for T1 mapping (0.94) and T2 mapping (0.96). CONCLUSIONS:Liver T1 and T2 mapping showed moderate positive correlation with MR elastography. Accuracy of MRE is however superior to T1 and T2 mapping in the subset of patients who underwent liver biopsy. Accuracy of combination of MRE and T1 mapping/T2 mapping was not superior to MRE alone.
PMID: 31875241
ISSN: 2366-0058
CID: 4244242

fastMRI: A Publicly Available Raw k-Space and DICOM Dataset of Knee Images for Accelerated MR Image Reconstruction Using Machine Learning

Knoll, Florian; Zbontar, Jure; Sriram, Anuroop; Muckley, Matthew J; Bruno, Mary; Defazio, Aaron; Parente, Marc; Geras, Krzysztof J; Katsnelson, Joe; Chandarana, Hersh; Zhang, Zizhao; Drozdzalv, Michal; Romero, Adriana; Rabbat, Michael; Vincent, Pascal; Pinkerton, James; Wang, Duo; Yakubova, Nafissa; Owens, Erich; Zitnick, C Lawrence; Recht, Michael P; Sodickson, Daniel K; Lui, Yvonne W
A publicly available dataset containing k-space data as well as Digital Imaging and Communications in Medicine image data of knee images for accelerated MR image reconstruction using machine learning is presented.
PMCID:6996599
PMID: 32076662
ISSN: 2638-6100
CID: 4312462

Consensus report from the 8th International Forum for Liver Magnetic Resonance Imaging

Zech, Christoph J; Ba-Ssalamah, Ahmed; Berg, Thomas; Chandarana, Hersh; Chau, Gar-Yang; Grazioli, Luigi; Kim, Myeong-Jin; Lee, Jeong Min; Merkle, Elmar M; Murakami, Takamichi; Ricke, Jens; B Sirlin, Claude; Song, Bin; Taouli, Bachir; Yoshimitsu, Kengo; Koh, Dow-Mu
OBJECTIVES/OBJECTIVE:The 8th International Forum for Liver Magnetic Resonance Imaging (MRI), held in Basel, Switzerland, in October 2017, brought together clinical and academic radiologists from around the world to discuss developments in and reach consensus on key issues in the field of gadoxetic acid-enhanced liver MRI since the previous Forum held in 2013. METHODS:Two main themes in liver MRI were considered in detail at the Forum: the use of gadoxetic acid for contrast-enhanced MRI in patients with liver cirrhosis and the technical performance of gadoxetic acid-enhanced liver MRI, both opportunities and challenges. This article summarises the expert presentations and the delegate voting on consensus statements discussed at the Forum. RESULTS AND CONCLUSIONS/CONCLUSIONS:It was concluded that gadoxetic acid-enhanced MRI has higher sensitivity for the diagnosis of hepatocellular carcinoma (HCC), when compared with multidetector CT, by utilising features of hyperenhancement in the arterial phase and hypointensity in the hepatobiliary phase (HBP). Recent HCC management guidelines recognise an increasing role for gadoxetic acid-enhanced MRI in early diagnosis and monitoring post-resection. Additional research is needed to define the role of HBP in predicting microvascular invasion, to better define washout during the transitional phase in gadoxetic acid-enhanced MRI for HCC diagnosis, and to reduce the artefacts encountered in the arterial phase. Technical developments are being directed to shortening the MRI protocol for reducing time and patient discomfort and toward utilising faster imaging and non-Cartesian free-breathing approaches that have the potential to improve multiphasic dynamic imaging. KEY POINTS/CONCLUSIONS:• Gadoxetic acid-enhanced MRI provides higher diagnostic sensitivity than CT for diagnosing HCC. • Gadoxetic acid-enhanced MRI has roles in early-HCC diagnosis and monitoring post-resection response. • Faster imaging and free-breathing approaches have potential to improve multiphasic dynamic imaging.
PMID: 31385048
ISSN: 1432-1084
CID: 4033062

GRASP-Pro: imProving GRASP DCE-MRI through self-calibrating subspace-modeling and contrast phase automation

Feng, Li; Wen, Qiuting; Huang, Chenchan; Tong, Angela; Liu, Fang; Chandarana, Hersh
PURPOSE/OBJECTIVE:To propose a highly accelerated, high-resolution dynamic contrast-enhanced MRI (DCE-MRI) technique called GRASP-Pro (golden-angle radial sparse parallel imaging with imProved performance) through a joint sparsity and self-calibrating subspace constraint with automated selection of contrast phases. METHODS:GRASP-Pro reconstruction enforces a combination of an explicit low-rank subspace-constraint and a temporal sparsity constraint. The temporal basis used to construct the subspace is learned from an intermediate reconstruction step using the low-resolution portion of radial k-space, which eliminates the need for generating the basis using auxiliary data or a physical signal model. A convolutional neural network was trained to generate the contrast enhancement curve in the artery, from which clinically relevant contrast phases are automatically selected for evaluation. The performance of GRASP-Pro was demonstrated for high spatiotemporal resolution DCE-MRI of the prostate and was compared against standard GRASP in terms of overall image quality, image sharpness, and residual streaks and/or noise level. RESULTS:Compared to GRASP, GRASP-Pro reconstructed dynamic images with enhanced sharpness, less residual streaks and/or noise, and finer delineation of the prostate without prolonging reconstruction time. The image quality improvement reached statistical significance (P < 0.05) in all the assessment categories. The neural network successfully generated contrast enhancement curves in the artery, and corresponding peak enhancement indexes correlated well with that from the manual selection. CONCLUSION/CONCLUSIONS:GRASP-Pro is a promising method for rapid and continuous DCE-MRI. It enables superior reconstruction performance over standard GRASP and allows reliable generation of artery enhancement curve to guide the selection of desired contrast phases for improving the efficiency of GRASP MRI workflow.
PMID: 31400028
ISSN: 1522-2594
CID: 4034522

Pancreas deformation in the presence of tumors using feature tracking from free-breathing XD-GRASP MRI

Chitiboi, Teodora; Muckley, Matthew; Dane, Bari; Huang, Chenchan; Feng, Li; Chandarana, Hersh
BACKGROUND:Quantifying the biomechanical properties of pancreatic tumors could potentially help with assessment of tumor aggressiveness, prognosis, and prediction of therapy response. PURPOSE/OBJECTIVE:To quantify respiratory-induced deformation in the pancreas and pancreatic lesions using XD-GRASP (eXtra-Dimensional Golden-angle RAdial Sparse Parallel), MRI. STUDY TYPE/METHODS:W) imaging were studied. SUBJECTS/METHODS:Thirty-two patients (12 male and 20 female) including nine with pancreatic lesions constituted our study cohort. FIELD STRENGTH/SEQUENCE/UNASSIGNED:WI contrast-enhanced gradient echo radial free-breathing acquisition. ASSESSMENT/RESULTS:Using the XD-GRASP imaging technique, the acquired free-breathing radial data were sorted and binned into 10 consecutive respiratory motion states that were jointly reconstructed. 3D deformation fields along the respiratory dimension were computed using an optical flow method and were analyzed in the pancreas. STATISTICAL TESTS/UNASSIGNED:The Wilcoxon signed-rank test was used to assess the difference in average displacement across pancreatic regions, while the Wilcoxon rank-sum test was used for displacement differences between patients with and without tumors. The interclass correlation coefficient (ICC) was computed to assess consistency between observers for each image quality measure. RESULTS:There was a significantly larger displacement in the pancreatic tail compared with the head (8.2 ± 3.7 mm > 5.8 ± 2.4 mm; P < 0.001) and body regions (8.2 ± 3.7 mm > 6.6 ± 2.9 mm; P < 0.001). Furthermore, there was reduced normalized average displacement in patients with pancreatic lesions compared with subjects without lesions (0.33 ± 0.1 < 0.69 ± 0.26, P < 0.001 for the head; 0.30 ± 0.1 < 0.84 ± 0.31, P < 0.001 for the body; and 0.44 ± 0.31 < 1.08 ± 0.53, P < 0.001 for the tail, respectively). DATA CONCLUSION/UNASSIGNED:Free-breathing respiratory motion-sorted XD-GRASP MRI has the potential to noninvasively characterize the biomechanical properties of the pancreas by quantifying breathing-induced mechanical displacement. LEVEL OF EVIDENCE/METHODS:4 Technical Efficacy: Stage 2 J. Magn. Reson. Imaging 2019.
PMID: 30854767
ISSN: 1522-2586
CID: 3732932

Detection of hepatic steatosis and iron content at 3 Tesla: comparison of two-point Dixon, quantitative multi-echo Dixon, and MR spectroscopy

Zhan, Chenyang; Olsen, Sonja; Zhang, Hoi Cheung; Kannengiesser, Stephan; Chandarana, Hersh; Shanbhogue, Krishna Prasad
PURPOSE/OBJECTIVE:To compare qualitative results obtained from computer-aided dual-ratio analysis on T1-weighted two-point Dixon, with T2*-corrected multi-echo Dixon and T2-corrected multi-echo single-voxel MR spectroscopy sequence (MRS) for evaluation of liver fat and iron at 3T. METHODS AND MATERIALS/METHODS:This retrospective, HIPAA-compliant, IRB-approved study included 479 patients with known or suspected liver disease. Two-point Dixon, multi-echo Dixon, and MR spectroscopy sequences were performed for each patient at 3T. A receiver-operating characteristic analysis was performed to compare the diagnostic performance in 80 patients using biopsy as the standard. Sensitivity, specificity, PPV, and NPV of qualitative two-point Dixon results, multi-echo Dixon (PDFF and R2*), and MRS (fat fraction and R2 water) for detection of hepatic steatosis and siderosis were assessed. RESULTS:, respectively. CONCLUSION/CONCLUSIONS:The computer-aided dual-ratio discrimination with two-point Dixon is a useful qualitative screening tool with high negative predictive value for hepatic steatosis and iron overload. Multi-echo Dixon and MRS have similar accuracy for detection of hepatic steatosis and iron overload at 3 Tesla.
PMID: 31286208
ISSN: 2366-0058
CID: 3976472

Differential diagnosis of renal tumours [Meeting Abstract]

Chandarana, H
Incidence of kidney cancer is steadily rising likely due to incidental detection of small renal masses. Nearly 20% of all small renal masses (less than 4cm in size) are benign at pathology. Furthermore, these small renal cancers represents 70% of all newly diagnosed Renal Cell Cancers (RCC). Detection of small renal masses leads to management dilemma, as it is not always possible to characterise these lesions on conventional imaging. Inability to discriminate benign from malignant and indolent from aggressive tumour results in surgical treatment for many of these patients. Surgery provides excellent oncologic control but it is associated with increased morbidity. Treatment based on tumour aggressiveness will result in optimal outcome by selecting patients with aggressive tumour for surgery and avoiding unnecessary surgery in indolent tumours. Such a paradigm requires non-invasive methods to accurately diagnose tumours of different aggressiveness. Tumours of different histopathology differ in tumour aggressiveness. Imaging can help investigate renal tumour histopathology and aggressiveness and can impact treatment decision and lower treatment cost. Imaging can assist with: (A). Differentiating benign renal masses from malignant tumours. - Protenacious or hemorrhagic cysts are hyperdense on CT and T1 hyperintense on MRI. Differentiating these lesions from solid masses requires assessment of enhancement. To assess for enhancement we can obtain pre-and post-contrast imaging on CT or MRI. Dual energy CT permits a single phase CT imaging to assess for enhancement, thus decreasing radiation dose. Subtraction imaging on MRI is useful to assess for enhancement. - Benign angiomyolipoma (AML) contain bulk fat. This can be easily diagnosed on CT and MRI. - Lipid poor AML can be difficult to differentiate from other types of renal masses on CT imaging. MRI can be helpful in suggesting the diagnosis of lipid poor AML. Some of the MRI features that suggest diagnosis of AML include homogenous and uniform enhancement, homogenous T2 signal similar to that of muscle, and restricted diffusion with low ADC. Suggesting this diagnosis is important as diagnosis of lipid poor AML can be made confidently at core biopsy, thus avoiding surgery in these patients - It is nearly impossible to discriminate benign oncocytoma from chromophobe and clear cell subtypes of kidney cancers on conventional imaging. However, diffusion weighted imaging (DWI) and perfusion weighted imaging (PWI) has shown some promise in small pilot studies. (B). Tumour subtypes of solid R
EMBASE:629440532
ISSN: 1470-7330
CID: 4119162