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Quantitative multivoxel proton MR spectroscopy for the identification of white matter abnormalities in mild traumatic brain injury: Comparison between regional and global analysis

Davitz, Matthew S; Gonen, Oded; Tal, Assaf; Babb, James S; Lui, Yvonne W; Kirov, Ivan I
BACKGROUND:H MRS with the ability to separate tissue-type partial volume contribution(s). PURPOSE/OBJECTIVE:H MRSI voxel averaging is sensitive to regional WM metabolic abnormalities. STUDY TYPE/METHODS:Retrospective cross-sectional cohort study. POPULATION/METHODS:Twenty-seven subjects: 15 symptomatic mTBI patients, 12 matched controls. FIELD STRENGTH/SEQUENCE/UNASSIGNED:. ASSESSMENT/RESULTS:N-acetyl-aspartate (NAA), creatine, choline, and myo-inositol concentrations estimated in predominantly WM regions: body, genu, and splenium of the corpus callosum, corona radiata, frontal, and occipital WM. STATISTICAL TESTS/UNASSIGNED:Analysis of covariance (ANCOVA) to compare patients with controls in terms of regional concentrations. The effect sizes (Cohen's d) of the mean differences were compared across regions and with previously published global data obtained with linear regression of the WM over the entire VOI in the same dataset. RESULTS:Despite patients' global VOI WM NAA being significantly lower than the controls', no regional differences were observed for any metabolite. Regional NAA comparisons, however, were all unidirectional (patients' NAA concentrations < controls') within a narrow range: 0.3 ≤ Cohen's d ≤ 0.6. DATA CONCLUSION/UNASSIGNED:H MRS studies, given that these results are confirmed in other cohorts. LEVEL OF EVIDENCE/METHODS:2 Technical Efficacy: Stage 3 J. Magn. Reson. Imaging 2019.
PMID: 30868703
ISSN: 1522-2586
CID: 3733342

Effect of intravoxel incoherent motion on diffusion parameters in normal brain

Vieni, Casey; Ades-Aron, Benjamin; Conti, Bettina; Sigmund, Eric E; Riviello, Peter; Shepherd, Timothy M; Lui, Yvonne W; Novikov, Dmitry S; Fieremans, Els
At very low diffusion weighting the diffusion MRI signal is affected by intravoxel incoherent motion (IVIM) caused by dephasing of magnetization due to incoherent blood flow in capillaries or other sources of microcirculation. While IVIM measurements at low diffusion weightings have been frequently used to investigate perfusion in the body as well as in malignant tissue, the effect and origin of IVIM in normal brain tissue is not completely established. We investigated the IVIM effect on the brain diffusion MRI signal in a cohort of 137 radiologically-normal patients (62 male; mean age = 50.2 ± 17.8, range = 18 to 94). We compared the diffusion tensor parameters estimated from a mono-exponential fit at b = 0 and 1000 s/mm2 versus at b = 250 and 1000 s/mm2. The asymptotic fitting method allowed for quantitative assessment of the IVIM signal fraction f* in specific brain tissue and regions. Our results show a mean (median) percent difference in the mean diffusivity of about 4.5 (4.9)% in white matter (WM), about 7.8 (8.7)% in cortical gray matter (GM), and 4.3 (4.2)% in thalamus. Corresponding perfusion fraction f* was estimated to be 0.033 (0.032) in WM, 0.066 (0.065) in cortical GM, and 0.033 (0.030) in the thalamus. The effect of f* with respect to age was found to be significant in cortical GM (Pearson correlation ρ = 0.35, p = 3*10-5) and the thalamus (Pearson correlation ρ = 0.20, p = 0.022) with an average increase in f* of 5.17*10-4/year and 3.61*10-4/year, respectively. Significant correlations between f* and age were not observed for WM, and corollary analysis revealed no effect of gender on f*. Possible origins of the IVIM effect in normal brain tissue are discussed.
PMID: 31580945
ISSN: 1095-9572
CID: 4116382

A quantitative view of MS disease course [Meeting Abstract]

Rovira, A; Perea, R D; Lei, Y; Bermel, R A; Benzinger, T L S; Blefari, M L; Boster, A L; Calabresi, P; Corredor-Jerez, R; De, Moor C; Fartaria, M J; Hersh, C M; Huelnhagen, T; Hyland, M H; Izbudak, I; Jones, S E; Kitzler, H H; Kober, T; Krupp, L; Lui, Y; Makaretz, S; Montalban, X; Mowry, E M; Naismith, R; Ontaneda, D; Plavina, T; Schulze, M; Singh, C; Tackenberg, B; Tintore, M; Tivarus, M E; Tsang, A; Ziemssen, T; Zhuang, Y; Williams, J R; Rudick, R A; Fisher, E
Objective: To use quantitative metrics from a large heterogenous population of MS PATHS (Partners Advancing Technology for Health Solutions) patients to derive an integrated view of MS disease course.
Background(s): A commonly used diagram to describe MS disease course shows how various measures change over time. The curves are derived hypothetically, and the best fit patterns, e.g. linear, accelerating, are uncertain. It is also unknown whether the diagrams reflect the current era of disease modifying therapies.
Method(s): In MS PATHS, 2 standardized MRI acquisition sequences (3D FLAIR and 3D T1 on Siemens 3T scanners) were incorporated into routine MS MRI protocols at all participating institutions. A software prototype (MSPie) was developed for automated calculation of brain parenchymal fraction (BPF), total T2 lesion volume (T2LV), and new T2 lesion counts (newT2). The Multiple Sclerosis Performance Test (MSPT) was used to complete neuroperformance tests and questionnaires, including Patient Determined Disease Steps (PDDS) and self-reported relapses. Serum was collected as part of an MS PATHS biomarker sub-study and analyzed by SIMOA kit assay to measure serum neurofilament light (sNfL). Cross-sectional data from patients with MRI metrics were analyzed using linear regression to calculate slopes, and tests for quadratic terms to test linearity, for each measure vs disease duration.
Result(s): 5215 unique patients (mean[sd] age=45.9[11.9]; disease duration=11.9[8.8] years) had MRI metrics. Over nearly 4 decades of MS, BPF showed a linear decrease (slope=-0.16%/year) while PDDS and T2LV showed a linear increase, with annual slopes of 0.076/year and 0.51ml/year, respectively. Linear terms (slopes) were highly significant (p< 10-15); whereas quadratic terms were weak (p< 0.05). Markers of inflammatory activity, including newT2 and relapses, stayed constant/decreased over the course of MS, with annual slopes of -0.01 (p=0.174) and -0.01 (p< 10-6), respectively. Log(sNfL) increased linearly (slope= 0.015/year, p< 10-14).
Conclusion(s): Standardization of MRIs across an international network is feasible, enabling high quality MRI-based metrics and systematic learning from routine patient care. Although limited by the cross-sectional nature of the analyses, these results show strong linearity observed for various measures of disease progression, suggesting that MS neither stabilizes nor accelerates in later stages, unlike some hypothetical diagrams of disease evolution
EMBASE:631450249
ISSN: 1352-4585
CID: 4385842

Use of diffusion kurtosis versus volumetrics for the detection of gray matter pathology [Meeting Abstract]

Cao, L Q; Ades-Aron, B; Yaros, K; Gillingham, N; Novikov, D; Lui, Y W; Kister, I; Shepherd, T K; Fieremans, E
Introduction: Although often characterized as a disease of white matter, gray matter (GM) pathology has been shown to play an important role in multiple sclerosis (MS).
Objective(s): We used diffusion kurtosis imaging (DKI), a clinically feasible extension of diffusion tensor imaging (DTI) to characterize pathology in cortical and subcortical GM regions in MS patients compared to controls and study how selected DKI parameters correlate with disease severity in comparison to traditional volumetric approaches.
Method(s): 36 MS patients and 24 age and gender matched controls were enrolled in the study. MS patients completed a Patient Determined Disease Steps Score (PDDS). All patients received MRI on a 3T MR Scanner (Siemens, Skyra, or Prisma), which included whole brain 3D magnetization-prepared rapid gradientecho (MPRAGE) (1 mm3 isotropic resolution) for extracting volumetrics and monopolar diffusion-weighted echo-planar imaging (EPI) (voxel size = 1.7 x 1.7 x 3 mm3, b=0, 250, 1000, and 2000 s/m2 along 84 directions, TE/TR = 100/3500 ms, GRAPPA with acceleration 2, and multiband 2) for deriving diffusion metrics. Volume metrics from automatic segmentation from MPRAGE and diffusion metrics which included mean diffusivity (MD), mean kurtosis (MK), and fractional anisotropy (FA) were derived for 7 subcortical and 5 cortical GM regions. We determined the partial correlations between PDDS and either GM volume or diffusion parameters covarying for gender and age. We also determined the differences in volume and diffusion metrics between MS patients and controls using ANCOVA with age as the covariate.
Result(s): We observed statistically significant differences in volumes between MS patients and controls for the amygdala, caudate, putamen, nucleus accumbens, cingulate lobe, and subcortical gray volumes with p-values ranging from 0.001 to 0.044. Statistically significant group differences were observed in a majority of the ROI for FA, MD, and MK. Overall, FA was increased, MD was increased, and MK was decreased for most ROI in MS patients compared to controls. There was an increased number of significant partial correlations between PDDS and diffusion metrics compared to PDDS and volume metrics, specifically positive correlations for occipital lobe MD and FA and negative correlations for hippocampal FA.
Conclusion(s): Our results suggest that DKI metrics are sensitive to changes in GM and complimentary to GM volumetrics as an index of GM pathology
EMBASE:631449409
ISSN: 1352-4585
CID: 4385802

Altered Relationship between Working Memory and Brain Microstructure after Mild Traumatic Brain Injury

Chung, S; Wang, X; Fieremans, E; Rath, J F; Amorapanth, P; Foo, F-Y A; Morton, C J; Novikov, D S; Flanagan, S R; Lui, Y W
BACKGROUND AND PURPOSE/OBJECTIVE:Working memory impairment is one of the most troubling and persistent symptoms after mild traumatic brain injury (MTBI). Here we investigate how working memory deficits relate to detectable WM microstructural injuries to discover robust biomarkers that allow early identification of patients with MTBI at the highest risk of working memory impairment. MATERIALS AND METHODS/METHODS:Multi-shell diffusion MR imaging was performed on a 3T scanner with 5 b-values. Diffusion metrics of fractional anisotropy, diffusivity and kurtosis (mean, radial, axial), and WM tract integrity were calculated. Auditory-verbal working memory was assessed using the Wechsler Adult Intelligence Scale, 4th ed, subtests: 1) Digit Span including Forward, Backward, and Sequencing; and 2) Letter-Number Sequencing. We studied 19 patients with MTBI within 4 weeks of injury and 20 healthy controls. Tract-Based Spatial Statistics and ROI analyses were performed to reveal possible correlations between diffusion metrics and working memory performance, with age and sex as covariates. RESULTS:= .04), mainly present in the right superior longitudinal fasciculus, which was not observed in healthy controls. Patients with MTBI also appeared to lose the normal associations typically seen in fractional anisotropy and axonal water fraction with Letter-Number Sequencing. Tract-Based Spatial Statistics results also support our findings. CONCLUSIONS:Differences between patients with MTBI and healthy controls with regard to the relationship between microstructure measures and working memory performance may relate to known axonal perturbations occurring after injury.
PMID: 31371359
ISSN: 1936-959x
CID: 4010192

Quantitative magnetic resonance evaluation of the trigeminal nerve in familial dysautonomia

Won, Eugene; Palma, Jose-Alberto; Kaufmann, Horacio; Milla, Sarah S; Cohen, Benjamin; Norcliffe-Kaufmann, Lucy; Babb, James S; Lui, Yvonne W
PURPOSE/OBJECTIVE:Familial dysautonomia (FD) is a rare autosomal recessive disease that affects the development of sensory and autonomic neurons, including those in the cranial nerves. We aimed to determine whether conventional brain magnetic resonance imaging (MRI) could detect morphologic changes in the trigeminal nerves of these patients. METHODS:Cross-sectional analysis of brain MRI of patients with genetically confirmed FD and age- and sex-matched controls. High-resolution 3D gradient-echo T1-weighted sequences were used to obtain measurements of the cisternal segment of the trigeminal nerves. Measurements were obtained using a two-reader consensus. RESULTS:in controls (P < 0.001). No association between trigeminal nerve area and age was found in patients or controls. CONCLUSIONS:Using conventional MRI, the caliber of the trigeminal nerves was significantly reduced bilaterally in patients with FD compared to controls, a finding that appears to be highly characteristic of this disorder. The lack of correlation between age and trigeminal nerve size supports arrested neuronal development rather than progressive atrophy.
PMID: 30783821
ISSN: 1619-1560
CID: 3686212

Preoperative Imaging for Facial Transplant: A Guide for Radiologists

Prabhu, Vinay; Plana, Natalie M; Hagiwara, Mari; Diaz-Siso, J Rodrigo; Lui, Yvonne W; Davis, Adam J; Sliker, Clint W; Shapiro, Maksim; Moin, Adnaan S; Rodriguez, Eduardo D
Facial transplant (FT) is a viable option for patients with severe craniomaxillofacial deformities. Transplant imaging requires coordination between radiologists and surgeons and an understanding of the merits and limitations of imaging modalities. Digital subtraction angiography and CT angiography are critical to mapping vascular anatomy, while volume-rendered CT allows evaluation of osseous defects and landmarks used for surgical cutting guides. This article highlights the components of successful FT imaging at two institutions and in two index cases. A deliberate stepwise approach to performance and interpretation of preoperative FT imaging, which consists of the modalities and protocols described here, is essential to seamless integration of the multidisciplinary FT team. ©RSNA, 2019 See discussion on this article by Lincoln .
PMID: 31125293
ISSN: 1527-1323
CID: 3921042

Behavioral and Structural Effects of Single and Repeat Closed-Head Injury

Kao, Y-C J; Lui, Y W; Lu, C-F; Chen, H-L; Hsieh, B-Y; Chen, C-Y
BACKGROUND AND PURPOSE/OBJECTIVE:The effects of multiple head impacts, even without detectable primary injury, on subsequent behavioral impairment and structural abnormality is yet well explored. Our aim was to uncover the dynamic changes and long-term effects of single and repetitive head injury without focal contusion on tissue microstructure and macrostructure. MATERIALS AND METHODS/METHODS:tests were used to evaluate the outcome change after injury and the cumulative effects of impact load, respectively. RESULTS:< .05) in neurologic outcome, balance, and locomotor activity were also aggravated after double injury. Histologic analysis showed astrogliosis 24 hours after injury, which persisted throughout the study period. CONCLUSIONS:There are measurable and dynamic changes in microstructure, cortical volume, behavior, and histopathology after both single and double injury, with more severe effects seen after double injury. This work bridges cross-sectional evidence from human subject and pathologic studies using animal models with a multi-time point, longitudinal research paradigm.
PMID: 30923084
ISSN: 1936-959x
CID: 3778932

State of the Art: Machine Learning Applications in Glioma Imaging

Lotan, Eyal; Jain, Rajan; Razavian, Narges; Fatterpekar, Girish M; Lui, Yvonne W
OBJECTIVE:Machine learning has recently gained considerable attention because of promising results for a wide range of radiology applications. Here we review recent work using machine learning in brain tumor imaging, specifically segmentation and MRI radiomics of gliomas. CONCLUSION/CONCLUSIONS:We discuss available resources, state-of-the-art segmentation methods, and machine learning radiomics for glioma. We highlight the challenges of these techniques as well as the future potential in clinical diagnostics, prognostics, and decision making.
PMID: 30332296
ISSN: 1546-3141
CID: 3368562

fastMRI: An Open Dataset and Benchmarks for Accelerated MRI [PrePrint]

Zbontar, Jure; Knoll, Florian; Sriram, Anuroop; Murrell, Tullie; Huang, Zhengnan; Muckley, Matthew J; Defazio, Aaron; Stern, Ruben; Johnson, Patricia; Bruno, Mary; Parente, Marc; Geras, Krzysztof J; Katsnelson, Joe; Chandarana, Hersh; Zhang, Zizhao; Drozdzal, Michal; Romero, Adirana; Rabbat, Michael; Vincent, Pascal; Yakubova, Nafissa; Pinkerton, James; Wang, Duo; Owens, Erich; Zitnick, C Lawrence; Recht, Michael P; Sodickson, Daniel K; Lui, Yvonne W
Accelerating Magnetic Resonance Imaging (MRI) by taking fewer measurements has the potential to reduce medical costs, minimize stress to patients and make MRI possible in applications where it is currently prohibitively slow or expensive. We introduce the fastMRI dataset, a large-scale collection of both raw MR measurements and clinical MR images, that can be used for training and evaluation of machine-learning approaches to MR image reconstruction. By introducing standardized evaluation criteria and a freely-accessible dataset, our goal is to help the community make rapid advances in the state of the art for MR image reconstruction. We also provide a self-contained introduction to MRI for machine learning researchers with no medical imaging background
ORIGINAL:0014686
ISSN: 2331-8422
CID: 4534312