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"Pin the Tumor on the Kidney:" An Evaluation of how Surgeons Translate CT and MRI data to 3D Models
Wake, Nicole; Wysock, James S; Bjurlin, Marc A; Chandarana, Hersh; William, C Huang
OBJECTIVE:To quantify how surgeons translate two-dimensional (2D) CT or MRI data to a three-dimensional (3D) model and evaluate if 3D printed models improve tumor localization. MATERIALS AND METHODS/METHODS:Twenty patients with renal masses were randomly selected from our IRB approved prospective 3D modeling study. Three surgeons reviewed the clinically available CT or MRI data; and using computer-aided design (CAD) software, translated the renal tumor to the position on the kidney that corresponded with the image interpretation. The renal tumor location determined by each surgeon was compared to the true renal mass location determined by the segmented imaging data and the Dice Similarity Coefficient (DSC) was calculated to evaluate the spatial overlap accuracy. The exercise was repeated for a subset of patients with a 3D printed model. RESULTS:The mean DSC was 0.243 ± 0.236 for the entire cohort (n=60). There was no overlap between the actual renal tumor and renal tumor identified by the surgeons in 16/60 cases (26.67%). Seven cases were reviewed again by two surgeons in a different setting with a 3D printed renal cancer model. For these cases, the DSC improved from 0.277 ± 0.248 using imaging only to 0.796 ± 0.090 with the 3D printed model (p < 0.01). CONCLUSIONS:In this study, cognitive renal tumor localization based on CT and MRI data was poor. This study demonstrates that experienced surgeons cannot always translate 2D imaging studies into 3D. Furthermore, 3D printed models can improve tumor localization and potentially assist with appropriate surgical approach.
PMID: 31233814
ISSN: 1527-9995
CID: 3955222
Bosniak Classification of Cystic Renal Masses, Version 2019: An Update Proposal and Needs Assessment
Silverman, Stuart G; Pedrosa, Ivan; Ellis, James H; Hindman, Nicole M; Schieda, Nicola; Smith, Andrew D; Remer, Erick M; Shinagare, Atul B; Curci, Nicole E; Raman, Steven S; Wells, Shane A; Kaffenberger, Samuel D; Wang, Zhen J; Chandarana, Hersh; Davenport, Matthew S
Cystic renal cell carcinoma (RCC) is almost certainly overdiagnosed and overtreated. Efforts to diagnose and treat RCC at a curable stage result in many benign neoplasms and indolent cancers being resected without clear benefit. This is especially true for cystic masses, which compared with solid masses are more likely to be benign and, when malignant, less aggressive. For more than 30 years, the Bosniak classification has been used to stratify the risk of malignancy in cystic renal masses. Although it is widely used and still effective, the classification does not formally incorporate masses identified at MRI or US or masses that are incompletely characterized but are highly likely to be benign, and it is affected by interreader variability and variable reported malignancy rates. The Bosniak classification system cannot fully differentiate aggressive from indolent cancers and results in many benign masses being resected. This proposed update to the Bosniak classification addresses some of these shortcomings. The primary modifications incorporate MRI, establish definitions for previously vague imaging terms, and enable a greater proportion of masses to enter lower-risk classes. Although the update will require validation, it aims to expand the number of cystic masses to which the Bosniak classification can be applied while improving its precision and accuracy for the likelihood of cancer in each class.
PMID: 31210616
ISSN: 1527-1315
CID: 3939062
MR elastography of liver at 3 Tesla: comparison of gradient-recalled echo (GRE) and spin-echo (SE) echo-planar imaging (EPI) sequences and agreement across stiffness measurements
Zhan, Chenyang; Kannengiesser, Stephan; Chandarana, Hersh; Fenchel, Matthias; Ream, Justin; Shanbhogue, Krishna Prasad
PURPOSE/OBJECTIVE:To compare 2D gradient-recalled echo (GRE) and 2D spin-echo (SE) echo-planar imaging (EPI) MR elastography (MRE) for measurement of hepatic stiffness in adult patients with known or suspected liver disease at 3 Tesla. MATERIALS AND METHODS/METHODS:Three hundred and eighty-seven consecutive patients underwent MRE of the liver at 3 Tesla with 2D-GRE and 2D-SE-EPI sequences. 'Mean liver stiffness (LS)' calculated by averaging 3 ROIs in the right lobe, 'Maximum LS' calculated by an ROI in the right lobe; and 'Freehand LS' calculated by an ROI in the entire liver were measured by two independent readers. Inter-observer and inter-class variability in stiffness measurements were assessed. Stiffness values were correlated with degree of liver fibrosis (METAVIR scores) in 97 patients who underwent biopsy. The diagnostic performance was compared by a receiver-operating characteristic analysis. RESULTS:indicating iron overload). There is high reproducibility for both GRE and SE-EPI variants (ICC = 0.84-0.94 for both GRE and SE-EPI MRE). The highest sensitivity, specificity, and accuracy of differentiating mild fibrosis (F0-F2) from advanced fibrosis (F3-F4) are 0.84 (GRE Freehand measurement), 0.92 (GRE Maximum stiffness measurement), and 0.88 (GRE Freehand measurement), respectively. CONCLUSIONS:High intra-class correlation and intra-reader correlation are seen on measured hepatic stiffness for both 2D-GRE and 2D-SE-EPI MRE. 2D-SE-EPI has lower failure rate. Diagnostic performance of both sequences is equivalent, with highest sensitivity for 2D-GRE Freehand stiffness measurement, and highest specificity 2D-GRE Maximum stiffness measurement.
PMID: 30796479
ISSN: 2366-0058
CID: 3688102
Bosniak IIF and III Renal Cysts: Can Apparent Diffusion Coefficient-Derived Texture Features Discriminate Between Malignant and Benign IIF and III Cysts?
Gillingham, Nicolas; Chandarana, Hersh; Kamath, Amita; Shaish, Hiram; Hindman, Nicole
OBJECTIVE:The aim of this study was to determine which apparent diffusion coefficient-derived texture features are associated with malignancy in Bosniak IIF and III renal cystic lesions. METHODS:Twenty benign and 7 malignant Bosniak IIF (22) or III (5) renal cysts, as evaluated with magnetic resonance imaging, were assessed for progression to pathology-confirmed malignancy. Whole-cyst volumes of interest were manually segmented from apparent diffusion coefficient maps. Texture features were extracted from each volume of interest, including first-order histogram-based features and higher-order features, and data were analyzed with the Mann-Whitney U test to predict malignant progression. RESULTS:Eleven of 17 first-order features were significantly greater in benign compared with malignant cysts. Eight higher-order gray-level co-occurrence matrix (GLCM) texture features were significantly different between groups, 5 of which were greater in the benign population. CONCLUSIONS:Apparent diffusion coefficient-derived texture measures may help differentiate between benign and malignant Bosniak IIF and III cysts.
PMID: 30801565
ISSN: 1532-3145
CID: 3698222
Renal and adrenal masses containing fat at MRI: Proposed nomenclature by the society of abdominal radiology disease-focused panel on renal cell carcinoma
Schieda, Nicola; Davenport, Matthew S; Pedrosa, Ivan; Shinagare, Atul; Chandarana, Hersch; Curci, Nicole; Doshi, Ankur; Israel, Gary; Remer, Erick; Wang, Jane; Silverman, Stuart G
This article proposes a consensus nomenclature for fat-containing renal and adrenal masses at MRI to reduce variability, improve understanding, and enhance communication when describing imaging findings. The MRI appearance of "macroscopic fat" occurs due to a sufficient number of aggregated adipocytes and results in one or more of: 1) intratumoral signal intensity (SI) loss using fat-suppression techniques, or 2) chemical shift artifact of the second kind causing linear or curvilinear India-ink (etching) artifact within or at the periphery of a mass at macroscopic fat-water interfaces. "Macroscopic fat" is most commonly observed in adrenal myelolipoma and renal angiomyolipoma (AML) and only rarely encountered in other adrenal cortical tumors and renal cell carcinomas (RCC). Nonlinear noncurvilinear signal intensity loss on opposed-phase (OP) compared with in-phase (IP) chemical shift MRI (CSI) may be referred to as "microscopic fat" and is due to: a) an insufficient amount of adipocytes, or b) the presence of fat within tumor cells. Determining whether the signal intensity loss observed on CSI is due to insufficient adipocytes or fat within tumor cells cannot be accomplished using CSI alone; however, it can be inferred when other imaging features strongly suggest a particular diagnosis. Fat-poor AML are homogeneously hypointense on T2 -weighted (T2 W) imaging and avidly enhancing; signal intensity loss at OP CSI is uncommon, but when present is usually focal and is caused by an insufficient number of adipocytes within adjacent voxels. Conversely, clear-cell RCC are heterogeneously hyperintense on T2 W imaging and avidly enhancing, with the signal intensity loss observed on OP CSI being typically diffuse and due to fat within tumor cells. Adrenal adenomas, adrenal cortical carcinoma, and adrenal metastases from fat-containing primary malignancies also show signal intensity loss on OP CSI due to fat within tumor cells and not from intratumoral adipocytes. Level of Evidence: 5 Technical Efficacy Stage: 3 J. Magn. Reson. Imaging 2019.
PMID: 30693607
ISSN: 1522-2586
CID: 3626532
Optimization of MRI Turnaround Times Through the Use of Dockable Tables and Innovative Architectural Design Strategies
Recht, Michael P; Block, Kai Tobias; Chandarana, Hersh; Friedland, Jennifer; Mullholland, Thomas; Teahan, Donal; Wiggins, Roy
OBJECTIVE:The purpose of this study is to increase the value of MRI by reengineering the MRI workflow at a new imaging center to shorten the interval (i.e., turnaround time) between each patient examination by at least 5 minutes. MATERIALS AND METHODS/METHODS:The elements of the MRI workflow that were optimized included the use of dockable tables, the location of patient preparation rooms, the number of doors per scanning room, and the storage location and duplication of coils. Turnaround times at the new center and at two existing centers were measured both for all patients and for situations when the next patient was ready to be brought into the scanner room after the previous patient's examination was completed. RESULTS:Workflow optimizations included the use of dockable tables, dedicated patient preparation rooms, two doors in each MRI room, positioning the scanner to provide the most direct path to the scanner, and coil storage in the preparation rooms, with duplication of the most frequently used coils. At the new imaging center, the median and mean (± SD) turnaround times for situations in which patients were ready for scanning were 115 seconds (95% CI, 113-117 seconds) and 132 ± 72 seconds (95% CI, 129-135 seconds), respectively, and the median and mean turnaround times for all situations were 141 seconds (95% CI, 137-146 seconds) and 272 ± 270 seconds (95% CI, 263-282 seconds), respectively. For existing imaging centers, the median and mean turnaround times for situations in which patients were ready for scanning were 430 seconds (95% CI, 424-434 seconds) and 460 ± 156 seconds (95% CI, 455-465 seconds), respectively, and the median and mean turnaround times for all situations were 481 seconds (95% CI, 474-486 seconds) and 537 ± 219 seconds (95% CI, 532-543 seconds), respectively. CONCLUSION/CONCLUSIONS:The optimized MRI workflow resulted in a mean time savings of 5 minutes 28 seconds per patient.
PMID: 30807221
ISSN: 1546-3141
CID: 3698342
Patient-specific 3D printed and augmented reality kidney and prostate cancer models: impact on patient education
Wake, Nicole; Rosenkrantz, Andrew B; Huang, Richard; Park, Katalina U; Wysock, James S; Taneja, Samir S; Huang, William C; Sodickson, Daniel K; Chandarana, Hersh
BACKGROUND:Patient-specific 3D models are being used increasingly in medicine for many applications including surgical planning, procedure rehearsal, trainee education, and patient education. To date, experiences on the use of 3D models to facilitate patient understanding of their disease and surgical plan are limited. The purpose of this study was to investigate in the context of renal and prostate cancer the impact of using 3D printed and augmented reality models for patient education. METHODS:Patients with MRI-visible prostate cancer undergoing either robotic assisted radical prostatectomy or focal ablative therapy or patients with renal masses undergoing partial nephrectomy were prospectively enrolled in this IRB approved study (n = 200). Patients underwent routine clinical imaging protocols and were randomized to receive pre-operative planning with imaging alone or imaging plus a patient-specific 3D model which was either 3D printed, visualized in AR, or viewed in 3D on a 2D computer monitor. 3D uro-oncologic models were created from the medical imaging data. A 5-point Likert scale survey was administered to patients prior to the surgical procedure to determine understanding of the cancer and treatment plan. If randomized to receive a pre-operative 3D model, the survey was completed twice, before and after viewing the 3D model. In addition, the cohort that received 3D models completed additional questions to compare usefulness of the different forms of visualization of the 3D models. Survey responses for each of the 3D model groups were compared using the Mann-Whitney and Wilcoxan rank-sum tests. RESULTS:All 200 patients completed the survey after reviewing their cases with their surgeons using imaging only. 127 patients completed the 5-point Likert scale survey regarding understanding of disease and surgical procedure twice, once with imaging and again after reviewing imaging plus a 3D model. Patients had a greater understanding using 3D printed models versus imaging for all measures including comprehension of disease, cancer size, cancer location, treatment plan, and the comfort level regarding the treatment plan (range 4.60-4.78/5 vs. 4.06-4.49/5, p < 0.05). CONCLUSIONS:All types of patient-specific 3D models were reported to be valuable for patient education. Out of the three advanced imaging methods, the 3D printed models helped patients to have the greatest understanding of their anatomy, disease, tumor characteristics, and surgical procedure.
PMID: 30783869
ISSN: 2365-6271
CID: 3686222
Simultaneous Evaluation of Lung Anatomy and Ventilation Using 4D Respiratory-Motion-Resolved Ultrashort Echo Time Sparse MRI
Feng, Li; Delacoste, Jean; Smith, David; Weissbrot, Joseph; Flagg, Eric; Moore, William H; Girvin, Francis; Raad, Roy; Bhattacharji, Priya; Stoffel, David; Piccini, Davide; Stuber, Matthias; Sodickson, Daniel K; Otazo, Ricardo; Chandarana, Hersh
BACKGROUND:Computed tomography (CT) and spirometry are the current standard methods for assessing lung anatomy and pulmonary ventilation, respectively. However, CT provides limited ventilation information and spirometry only provides global measures of lung ventilation. Thus, a method that can enable simultaneous examination of lung anatomy and ventilation is of clinical interest. PURPOSE/OBJECTIVE:To develop and test a 4D respiratory-resolved sparse lung MRI (XD-UTE: eXtra-Dimensional Ultrashort TE imaging) approach for simultaneous evaluation of lung anatomy and pulmonary ventilation. STUDY TYPE/METHODS:Prospective. POPULATION/METHODS:In all, 23 subjects (11 volunteers and 12 patients, mean age = 63.6 ± 8.4). FIELD STRENGTH/SEQUENCE/UNASSIGNED:3T MR; a prototype 3D golden-angle radial UTE sequence, a Cartesian breath-hold volumetric-interpolated examination (BH-VIBE) sequence. ASSESSMENT/RESULTS:All subjects were scanned using the 3D golden-angle radial UTE sequence during normal breathing. Ten subjects underwent an additional scan during alternating normal and deep breathing. Respiratory-motion-resolved sparse reconstruction was performed for all the acquired data to generate dynamic normal-breathing or deep-breathing image series. For comparison, BH-VIBE was performed in 12 subjects. Lung images were visually scored by three experienced chest radiologists and were analyzed by two observers who segmented the left and right lung to derive ventilation parameters in comparison with spirometry. STATISTICAL TESTS/UNASSIGNED:Nonparametric paired two-tailed Wilcoxon signed-rank test; intraclass correlation coefficient, Pearson correlation coefficient. RESULTS:XD-UTE achieved significantly improved image quality compared both with Cartesian BH-VIBE and radial reconstruction without motion compensation (P < 0.05). The global ventilation parameters (a sum of the left and right lung measures) were in good correlation with spirometry in the same subjects (correlation coefficient = 0.724). There were excellent correlations between the results obtained by two observers (intraclass correlation coefficient ranged from 0.8855-0.9995). DATA CONCLUSION/UNASSIGNED:Simultaneous evaluation of lung anatomy and ventilation using XD-UTE is demonstrated, which have shown good potential for improved diagnosis and management of patients with heterogeneous lung diseases. LEVEL OF EVIDENCE/METHODS:2 Technical Efficacy: Stage 2 J. Magn. Reson. Imaging 2018.
PMID: 30252989
ISSN: 1522-2586
CID: 3314262
Microstructure Changes in Radiochromic Films Due To Magnetic Field and Radiation
Volotskova, Olga; Fang, Xuiqi; Keidar, Michael; Chandarana, Hersh; Das, Indra J
PURPOSE/OBJECTIVE:To correlate the dose response and changes in microscopic structures of the radiochromic films exposed to the clinical magnetic field in the range 1.5-3T with standard and flattening filter-free (FFF) photon beams. METHODS:sheets/samples from one batch. These samples were exposed to a 1.5 Tesla (T) and/or 3T B-field from an MRI scanner using an abdominal sequence for 7 min before and after irradiation with 6 MV and/or 6 MV FFF beams. Films were placed in reference condition at 5 cm depth in a solid water phantom and exposed up to 20 Gy. The sample orientation was maintained the same during exposure, readout and scanning electron microscopic (SEM)-analysis. The samples were scanned with an Epson Expression 11000XL in 48-bit RGB color mode at 300 dpi with red channel. Scanned images were processed in Image J and red channel mean intensity values were recorded. The samples were then coated with 6 nm gold and imaged by SEM Teneo (5kV, 13pA) under 2000, 2500, and 3000 magnifications for texture analysis. RESULTS:The changes in the microstructure of the films in magnetic fields (1.5 and 3.0 T) were dose dependent. The orientation and granular size of samples at higher doses were altered compared to the controls. Needle-shaped structures of the active layer were longer and aligned for samples exposed to higher doses and magnetic field. However, no significant changes in optical density due to the presence of a magnetic field pre/post irradiation up to 20 Gy were observed. CONCLUSION/CONCLUSIONS:Fine structures of the film represent the polymerization characteristics that are affected by the radiation dose in the magnetic field. Upon exposure to radiation, diacetylene monomers undergo polymerization that forms longer chains with a temporal response. Even though this study did not notice any significant changes in optical density due to the presence of magnetic field, this should be studied in simultaneous application of the magnetic field during treatment in a dedicated MR-linac unit.
PMID: 30341911
ISSN: 2473-4209
CID: 3370132
Robustness of first-order texture features on 3t liver mri [Meeting Abstract]
Prabhu, V; Bruno, M; Gillingham, N; Chandarana, H
Purpose: To determine the impact of DWI and T2WI acquisition parameters on first-order hepatic texture measures at 3T MRI.
Material(s) and Method(s): Five healthy volunteers (3 M/2F, mean 40 years old) were prospectively imaged at 3T using baseline liver free-breathing DWI and T2WI acquisition twice to assess scan-rescan repeatability. Three modifications to acquisition parameters were also performed individually: decreased averages (2 vs. 4); lower resolution (DWI: 128x96 vs. 192x144 and T2WI: 192x192 vs. 320x320); and increased slice thickness (8 vs. 4 mm). A single reader placed four co-registered hepatic ROIs using 3D Slicer v4.8.1 (https://urldefense.proofpoint.com/v2/url?u=http-3A__www.slicer.org&d=DwIFAg&c=j5oPpO0eBH1iio48DtsedeElZfc04rx3ExJHeIIZuCs&r=EQR3KLkQ5UWCWWT7EfebH2P_dJeKQhvwk7yvrJe5GJY&m=VVljDEDjGLS_4z5jZ0uX9AVqXkAPM24hpGmZl06It_E&s=TQM-Y7ippXB-a-cXGwkMg-DnVAXTLHOB9hyiAIzdwXQ&e= ). 10 first-order histogram texture features (average of the four ROI) were compared to baseline acquisition. Percent difference (%diff) and coefficient of variance (CV) were computed using MedCalc.
Result(s): For ADC, 8 out of 10 parameters were repeat-able with <10% scan-rescan %diff; Skewness and Minimum were least repeatable with >10% scan-rescan %diff. Entropy was the only parameter that had < 10% CV and %diff for all acquisition schemes; all other parameters had >10% CV for at least one modified acquisition scheme. Skewness, Minimum, and Variance had the largest average CV. Change in slice thickness had the largest impact on most texture features. For T2WI, 9 out of 10 parameters were repeatable with <10% scan-rescan %diff; Skewness had >10% scan-rescan %diff. Entropy and Uniformity were the only two parameters that had <15% CV and %diff for all acquisition schemes. Change in slice thickness had the largest impact on most texture features.
Conclusion(s): ADC and T2WI first-order hepatic texture features, except for entropy, depend on acquisition parameters. Care must be taken to maintain identical acquisition schemes to compare changes in these features, such as after treatment
EMBASE:629939208
ISSN: 2366-0058
CID: 4226092