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Simultaneous Evaluation of Lung Anatomy and Ventilation Using 4D Respiratory-Motion-Resolved Ultrashort Echo Time Sparse MRI

Feng, Li; Delacoste, Jean; Smith, David; Weissbrot, Joseph; Flagg, Eric; Moore, William H; Girvin, Francis; Raad, Roy; Bhattacharji, Priya; Stoffel, David; Piccini, Davide; Stuber, Matthias; Sodickson, Daniel K; Otazo, Ricardo; Chandarana, Hersh
BACKGROUND:Computed tomography (CT) and spirometry are the current standard methods for assessing lung anatomy and pulmonary ventilation, respectively. However, CT provides limited ventilation information and spirometry only provides global measures of lung ventilation. Thus, a method that can enable simultaneous examination of lung anatomy and ventilation is of clinical interest. PURPOSE/OBJECTIVE:To develop and test a 4D respiratory-resolved sparse lung MRI (XD-UTE: eXtra-Dimensional Ultrashort TE imaging) approach for simultaneous evaluation of lung anatomy and pulmonary ventilation. STUDY TYPE/METHODS:Prospective. POPULATION/METHODS:In all, 23 subjects (11 volunteers and 12 patients, mean age = 63.6 ± 8.4). FIELD STRENGTH/SEQUENCE/UNASSIGNED:3T MR; a prototype 3D golden-angle radial UTE sequence, a Cartesian breath-hold volumetric-interpolated examination (BH-VIBE) sequence. ASSESSMENT/RESULTS:All subjects were scanned using the 3D golden-angle radial UTE sequence during normal breathing. Ten subjects underwent an additional scan during alternating normal and deep breathing. Respiratory-motion-resolved sparse reconstruction was performed for all the acquired data to generate dynamic normal-breathing or deep-breathing image series. For comparison, BH-VIBE was performed in 12 subjects. Lung images were visually scored by three experienced chest radiologists and were analyzed by two observers who segmented the left and right lung to derive ventilation parameters in comparison with spirometry. STATISTICAL TESTS/UNASSIGNED:Nonparametric paired two-tailed Wilcoxon signed-rank test; intraclass correlation coefficient, Pearson correlation coefficient. RESULTS:XD-UTE achieved significantly improved image quality compared both with Cartesian BH-VIBE and radial reconstruction without motion compensation (P < 0.05). The global ventilation parameters (a sum of the left and right lung measures) were in good correlation with spirometry in the same subjects (correlation coefficient = 0.724). There were excellent correlations between the results obtained by two observers (intraclass correlation coefficient ranged from 0.8855-0.9995). DATA CONCLUSION/UNASSIGNED:Simultaneous evaluation of lung anatomy and ventilation using XD-UTE is demonstrated, which have shown good potential for improved diagnosis and management of patients with heterogeneous lung diseases. LEVEL OF EVIDENCE/METHODS:2 Technical Efficacy: Stage 2 J. Magn. Reson. Imaging 2018.
PMID: 30252989
ISSN: 1522-2586
CID: 3314262

Microstructure Changes in Radiochromic Films Due To Magnetic Field and Radiation

Volotskova, Olga; Fang, Xuiqi; Keidar, Michael; Chandarana, Hersh; Das, Indra J
PURPOSE/OBJECTIVE:To correlate the dose response and changes in microscopic structures of the radiochromic films exposed to the clinical magnetic field in the range 1.5-3T with standard and flattening filter-free (FFF) photon beams. METHODS:sheets/samples from one batch. These samples were exposed to a 1.5 Tesla (T) and/or 3T B-field from an MRI scanner using an abdominal sequence for 7 min before and after irradiation with 6 MV and/or 6 MV FFF beams. Films were placed in reference condition at 5 cm depth in a solid water phantom and exposed up to 20 Gy. The sample orientation was maintained the same during exposure, readout and scanning electron microscopic (SEM)-analysis. The samples were scanned with an Epson Expression 11000XL in 48-bit RGB color mode at 300 dpi with red channel. Scanned images were processed in Image J and red channel mean intensity values were recorded. The samples were then coated with 6 nm gold and imaged by SEM Teneo (5kV, 13pA) under 2000, 2500, and 3000 magnifications for texture analysis. RESULTS:The changes in the microstructure of the films in magnetic fields (1.5 and 3.0 T) were dose dependent. The orientation and granular size of samples at higher doses were altered compared to the controls. Needle-shaped structures of the active layer were longer and aligned for samples exposed to higher doses and magnetic field. However, no significant changes in optical density due to the presence of a magnetic field pre/post irradiation up to 20 Gy were observed. CONCLUSION/CONCLUSIONS:Fine structures of the film represent the polymerization characteristics that are affected by the radiation dose in the magnetic field. Upon exposure to radiation, diacetylene monomers undergo polymerization that forms longer chains with a temporal response. Even though this study did not notice any significant changes in optical density due to the presence of magnetic field, this should be studied in simultaneous application of the magnetic field during treatment in a dedicated MR-linac unit.
PMID: 30341911
ISSN: 2473-4209
CID: 3370132

fastMRI: An Open Dataset and Benchmarks for Accelerated MRI [PrePrint]

Zbontar, Jure; Knoll, Florian; Sriram, Anuroop; Murrell, Tullie; Huang, Zhengnan; Muckley, Matthew J; Defazio, Aaron; Stern, Ruben; Johnson, Patricia; Bruno, Mary; Parente, Marc; Geras, Krzysztof J; Katsnelson, Joe; Chandarana, Hersh; Zhang, Zizhao; Drozdzal, Michal; Romero, Adirana; Rabbat, Michael; Vincent, Pascal; Yakubova, Nafissa; Pinkerton, James; Wang, Duo; Owens, Erich; Zitnick, C Lawrence; Recht, Michael P; Sodickson, Daniel K; Lui, Yvonne W
Accelerating Magnetic Resonance Imaging (MRI) by taking fewer measurements has the potential to reduce medical costs, minimize stress to patients and make MRI possible in applications where it is currently prohibitively slow or expensive. We introduce the fastMRI dataset, a large-scale collection of both raw MR measurements and clinical MR images, that can be used for training and evaluation of machine-learning approaches to MR image reconstruction. By introducing standardized evaluation criteria and a freely-accessible dataset, our goal is to help the community make rapid advances in the state of the art for MR image reconstruction. We also provide a self-contained introduction to MRI for machine learning researchers with no medical imaging background
ORIGINAL:0014686
ISSN: 2331-8422
CID: 4534312

Volumetric multicomponent T-1 rho relaxation mapping of the human liver under free breathing at 3T

Sharafi, Azadeh; Baboli, Rahman; Zibetti, Marcelo; Shanbhogue, Krishna; Olsen, Sonja; Block, Tobias; Chandarana, Hersh; Regatte, Ravinder
ISI:000496286600001
ISSN: 0740-3194
CID: 4221632

Robustness of first-order texture features on 3t liver mri [Meeting Abstract]

Prabhu, V; Bruno, M; Gillingham, N; Chandarana, H
Purpose: To determine the impact of DWI and T2WI acquisition parameters on first-order hepatic texture measures at 3T MRI.
Material(s) and Method(s): Five healthy volunteers (3 M/2F, mean 40 years old) were prospectively imaged at 3T using baseline liver free-breathing DWI and T2WI acquisition twice to assess scan-rescan repeatability. Three modifications to acquisition parameters were also performed individually: decreased averages (2 vs. 4); lower resolution (DWI: 128x96 vs. 192x144 and T2WI: 192x192 vs. 320x320); and increased slice thickness (8 vs. 4 mm). A single reader placed four co-registered hepatic ROIs using 3D Slicer v4.8.1 (https://urldefense.proofpoint.com/v2/url?u=http-3A__www.slicer.org&d=DwIFAg&c=j5oPpO0eBH1iio48DtsedeElZfc04rx3ExJHeIIZuCs&r=EQR3KLkQ5UWCWWT7EfebH2P_dJeKQhvwk7yvrJe5GJY&m=VVljDEDjGLS_4z5jZ0uX9AVqXkAPM24hpGmZl06It_E&s=TQM-Y7ippXB-a-cXGwkMg-DnVAXTLHOB9hyiAIzdwXQ&e= ). 10 first-order histogram texture features (average of the four ROI) were compared to baseline acquisition. Percent difference (%diff) and coefficient of variance (CV) were computed using MedCalc.
Result(s): For ADC, 8 out of 10 parameters were repeat-able with <10% scan-rescan %diff; Skewness and Minimum were least repeatable with >10% scan-rescan %diff. Entropy was the only parameter that had < 10% CV and %diff for all acquisition schemes; all other parameters had >10% CV for at least one modified acquisition scheme. Skewness, Minimum, and Variance had the largest average CV. Change in slice thickness had the largest impact on most texture features. For T2WI, 9 out of 10 parameters were repeatable with <10% scan-rescan %diff; Skewness had >10% scan-rescan %diff. Entropy and Uniformity were the only two parameters that had <15% CV and %diff for all acquisition schemes. Change in slice thickness had the largest impact on most texture features.
Conclusion(s): ADC and T2WI first-order hepatic texture features, except for entropy, depend on acquisition parameters. Care must be taken to maintain identical acquisition schemes to compare changes in these features, such as after treatment
EMBASE:629939208
ISSN: 2366-0058
CID: 4226092

Multi-institutional analysis of CT and MRI reports evaluating indeterminate renal masses: comparison to a national survey investigating desired report elements

Hu, Eric M; Zhang, Andrew; Silverman, Stuart G; Pedrosa, Ivan M; Wang, Zhen J; Smith, Andrew D; Chandarana, Hersh; Doshi, Ankur; Shinagare, Atul B; Remer, Erick M; Kaffenberger, Samuel D; Miller, David C; Davenport, Matthew S
PURPOSE/OBJECTIVE:To determine the need for a standardized renal mass reporting template by analyzing reports of indeterminate renal masses and comparing their contents to stated preferences of radiologists and urologists. METHODS:The host IRB waived regulatory oversight for this multi-institutional HIPAA-compliant quality improvement effort. CT and MRI reports created to characterize an indeterminate renal mass were analyzed from 6 community (median: 17 reports/site) and 6 academic (median: 23 reports/site) United States practices. Report contents were compared to a published national survey of stated preferences by academic radiologists and urologists from 9 institutions. Descriptive statistics and Chi-square tests were calculated. RESULTS:Of 319 reports, 85% (271; 192 CT, 79 MRI) reported a possibly malignant mass (236 solid, 35 cystic). Some essential elements were commonly described: size (99% [269/271]), mass type (solid vs. cystic; 99% [268/271]), enhancement (presence vs. absence; 92% [248/271]). Other essential elements had incomplete penetrance: the presence or absence of fat in solid masses (14% [34/236]), size comparisons when available (79% [111/140]), Bosniak classification for cystic masses (54% [19/35]). Preferred but non-essential elements generally were described in less than half of reports. Nephrometry scores usually were not included for local therapy candidates (12% [30/257]). Academic practices were significantly more likely than community practices to include mass characterization details, probability of malignancy, and staging. Community practices were significantly more likely to include management recommendations. CONCLUSIONS:Renal mass reporting elements considered essential or preferred often are omitted in radiology reports. Variation exists across radiologists and practice settings. A standardized template may mitigate these inconsistencies.
PMID: 29666953
ISSN: 2366-0058
CID: 3057302

Emerging Role of MRI in Radiation Therapy

Chandarana, Hersh; Wang, Hesheng; Tijssen, R H N; Das, Indra J
Advances in multimodality imaging, providing accurate information of the irradiated target volume and the adjacent critical structures or organs at risk (OAR), has made significant improvements in delivery of the external beam radiation dose. Radiation therapy conventionally has used computed tomography (CT) imaging for treatment planning and dose delivery. However, magnetic resonance imaging (MRI) provides unique advantages: added contrast information that can improve segmentation of the areas of interest, motion information that can help to better target and deliver radiation therapy, and posttreatment outcome analysis to better understand the biologic effect of radiation. To take advantage of these and other potential advantages of MRI in radiation therapy, radiologists and MRI physicists will need to understand the current radiation therapy workflow and speak the same language as our radiation therapy colleagues. This review article highlights the emerging role of MRI in radiation dose planning and delivery, but more so for MR-only treatment planning and delivery. Some of the areas of interest and challenges in implementing MRI in radiation therapy workflow are also briefly discussed.
PMID: 30194794
ISSN: 1522-2586
CID: 3274902

MRI Based Treatment Planning of Spinal Stereotactic Radiation Therapy [Meeting Abstract]

Teruel, J. R.; Wang, H.; McCarthy, A.; Osterman, K. S.; Schiff, P. B.; Chandarana, H.; Das, I. J.
ISI:000447811601544
ISSN: 0360-3016
CID: 3493412

Hybrid T2 - and T1 -weighted radial acquisition for free-breathing abdominal examination

Benkert, Thomas; Mugler, John P; Rigie, David S; Sodickson, Daniel K; Chandarana, Hersh; Block, Kai Tobias
PURPOSE/OBJECTIVE:-weighted images from a single scan and allows for free-breathing acquisition. THEORY AND METHODS/UNASSIGNED:-weighted gradient-echo (GRE) data. Improved robustness is achieved by extracting a respiratory signal from the GRE data and using it for motion-weighted reconstruction. RESULTS:-weighted Dixon acquisition is possible. CONCLUSION/CONCLUSIONS:-weighted imaging in a single scan. In addition to free-breathing abdominal examination, it promises value for clinical applications that are frequently affected by motion artifacts.
PMCID:6107373
PMID: 29656522
ISSN: 1522-2594
CID: 3042912

Correction to: Multi-institutional analysis of CT and MRI reports evaluating indeterminate renal masses: comparison to a national survey investigating desired report elements [Correction]

Hu, Eric M; Zhang, Andrew; Silverman, Stuart G; Pedrosa, Ivan; Wang, Zhen J; Smith, Andrew D; Chandarana, Hersh; Doshi, Ankur; Shinagare, Atul B; Remer, Erick M; Kaffenberger, Samuel D; Miller, David C; Davenport, Matthew S
The original version of this article contained an error in author name. The co-author's name was published as Ivan M. Pedrosa, instead it should be Ivan Pedrosa. The original article has been corrected.
PMID: 29767283
ISSN: 2366-0058
CID: 3164832