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Deep anomaly detection of seizures with paired stereoelectroencephalography and video recordings
Martini, Michael L; Valliani, Aly A; Sun, Claire; Costa, Anthony B; Zhao, Shan; Panov, Fedor; Ghatan, Saadi; Rajan, Kanaka; Oermann, Eric Karl
Real-time seizure detection is a resource intensive process as it requires continuous monitoring of patients on stereoelectroencephalography. This study improves real-time seizure detection in drug resistant epilepsy (DRE) patients by developing patient-specific deep learning models that utilize a novel self-supervised dynamic thresholding approach. Deep neural networks were constructed on over 2000 h of high-resolution, multichannel SEEG and video recordings from 14 DRE patients. Consensus labels from a panel of epileptologists were used to evaluate model efficacy. Self-supervised dynamic thresholding exhibited improvements in positive predictive value (PPV; difference: 39.0%; 95% CI 4.5-73.5%; Wilcoxon-Mann-Whitney test; N = 14; p = 0.03) with similar sensitivity (difference: 14.3%; 95% CI - 21.7 to 50.3%; Wilcoxon-Mann-Whitney test; N = 14; p = 0.42) compared to static thresholds. In some models, training on as little as 10 min of SEEG data yielded robust detection. Cross-testing experiments reduced PPV (difference: 56.5%; 95% CI 25.8-87.3%; Wilcoxon-Mann-Whitney test; N = 14; p = 0.002), while multimodal detection significantly improved sensitivity (difference: 25.0%; 95% CI 0.2-49.9%; Wilcoxon-Mann-Whitney test; N = 14; p < 0.05). Self-supervised dynamic thresholding improved the efficacy of real-time seizure predictions. Multimodal models demonstrated potential to improve detection. These findings are promising for future deployment in epilepsy monitoring units to enable real-time seizure detection without annotated data and only minimal training time in individual patients.
PMCID:8021582
PMID: 33820942
ISSN: 2045-2322
CID: 4839072
Drivers of Prolonged Hospitalization Following Spine Surgery: A Game-Theory-Based Approach to Explaining Machine Learning Models
Martini, Michael L; Neifert, Sean N; Gal, Jonathan S; Oermann, Eric K; Gilligan, Jeffrey T; Caridi, John M
BACKGROUND:Understanding the interactions between variables that predict prolonged hospital length of stay (LOS) following spine surgery can help uncover drivers of this risk in patients. This study utilized a novel game-theory-based approach to develop explainable machine learning models to understand such interactions in a large cohort of patients treated with spine surgery. METHODS:Of 11,150 patients who underwent surgery for degenerative spine conditions at a single institution, 3,310 (29.7%) were characterized as having prolonged LOS. Machine learning models predicting LOS were built for each patient. Shapley additive explanation (SHAP) values were calculated for each patient model to quantify the importance of features and variable interaction effects. RESULTS:Models using features identified by SHAP values were highly predictive of prolonged LOS risk (mean C-statistic = 0.87). Feature importance analysis revealed that prolonged LOS risk is multifactorial. Non-elective admission produced elevated SHAP values, indicating a clear, strong risk of prolonged LOS. In contrast, intraoperative and sociodemographic factors displayed bidirectional influences on risk, suggesting potential protective effects with optimization of factors such as estimated blood loss, surgical duration, and comorbidity burden. CONCLUSIONS:Meticulous management of patients with high comorbidity burdens or Medicaid insurance who are admitted non-electively or spend clinically indicated time in the intensive care unit (ICU) during their hospitalization course may be warranted to reduce their risk of unanticipated prolonged LOS following spine surgery. LEVEL OF EVIDENCE/METHODS:Prognostic Level III. See Instructions for Authors for a complete description of levels of evidence.
PMID: 33186002
ISSN: 1535-1386
CID: 4739562
Automated Measurement of Lumbar Lordosis on Radiographs Using Machine Learning and Computer Vision
Cho, Brian H; Kaji, Deepak; Cheung, Zoe B; Ye, Ivan B; Tang, Ray; Ahn, Amy; Carrillo, Oscar; Schwartz, John T; Valliani, Aly A; Oermann, Eric K; Arvind, Varun; Ranti, Daniel; Sun, Li; Kim, Jun S; Cho, Samuel K
STUDY DESIGN/METHODS:Cross sectional database study. OBJECTIVE:To develop a fully automated artificial intelligence and computer vision pipeline for assisted evaluation of lumbar lordosis. METHODS:Lateral lumbar radiographs were used to develop a segmentation neural network (n = 629). After synthetic augmentation, 70% of these radiographs were used for network training, while the remaining 30% were used for hyperparameter optimization. A computer vision algorithm was deployed on the segmented radiographs to calculate lumbar lordosis angles. A test set of radiographs was used to evaluate the validity of the entire pipeline (n = 151). RESULTS:> .05). CONCLUSION/CONCLUSIONS:This study is the first to use artificial intelligence and computer vision in a combined pipeline to rapidly measure a sagittal spinopelvic parameter without prior manual surgeon input. The pipeline measures angles with no statistically significant differences from manual measurements by surgeons. This pipeline offers clinical utility in an assistive capacity, and future work should focus on improving segmentation network performance.
PMCID:7359685
PMID: 32677567
ISSN: 2192-5682
CID: 5883292
By the Numbers Analysis of Effect of COVID-19 on a Neurosurgical Residency at the Epicenter
Rothrock, Robert J; Maragkos, Georgios A; Schupper, Alexander J; McNeill, Ian T; Oermann, Eric K; Yaeger, Kurt A; Gilligan, Jeffrey; Bederson, Joshua B; Mocco, J D
BACKGROUND:The severe acute respiratory syndrome coronavirus 2 pandemic has created challenges to neurosurgical patient care. Despite editorials evaluating neurosurgery responses to 2019 novel coronavirus disease (COVID-19), data reporting effects of COVID-19 on neurosurgical case volume, census, and resident illness are lacking. The aim of this study was to present a real-world analysis of neurosurgical volumes, resident deployment, and unique challenges encountered during the severe acute respiratory syndrome coronavirus 2 outbreak peak in New York City. METHODS:Daily census and case volume data were prospectively collected throughout the severe acute respiratory syndrome coronavirus 2 outbreak in spring 2020. Neurosurgical census was compared against COVID-19 system-wide data. Neurosurgical cases during the crisis were analyzed and compared with 7-week periods from 2019 and early 2020. Resident deployment and illness were reviewed. RESULTS:From March 16, 2020, to May 5, 2020, residents participated in 72 operations and 69 endovascular procedures compared with 448 operations and 253 endovascular procedures from January 2020 to February 2020 and 530 operations and 340 endovascular procedures from March 2019 to May 2019. There was a 59% reduction in neurosurgical census during the outbreak (median 24 patients, 2.75 average total cases daily). COVID-19 neurosurgical admissions peaked in concert with the system-wide pandemic. Three residents demonstrated COVID-19 symptoms (no hospitalizations occurred) for a total 24 workdays lost (median 7 workdays). CONCLUSIONS:These data provide real-world guidance on neurosurgical infrastructure needs during a COVID-19 outbreak. While redeployment to support the COVID-19 response was required, a significant need remained to continue to provide critical neurosurgical service.
PMCID:7367024
PMID: 32688039
ISSN: 1878-8769
CID: 5883302
Large Rises in Thoracolumbar Fusions by 2040: A Cause for Concern with an Increasingly Elderly Surgical Population
Neifert, Sean N; Martini, Michael L; Hanss, Katie; Rothrock, Robert J; Gilligan, Jeffrey; Zimering, Jeffrey; Caridi, John M; Oermann, Eric Karl
BACKGROUND:/Objective: With a growing aging population in the United States, the number of operative lumbar spine pathologies continues to grow. Therefore, our objective was to estimate the future demand for lumbar spine surgery volumes for the United States to the year 2040. METHODS:The National/Nationwide Inpatient Sample was queried for years 2003-2015 for anterior interbody and posterior lumbar fusions (ALIF, PLF) to create national estimates of procedural volumes for those years. The average age and comorbidity burden was characterized, and Poisson modeling controlling for age and sex allowed for surgical volume prediction to 2040 in ten year increments. Age was grouped into categories (<25 years old, 25-34, 35-44, 45-54, 55-64, 65-74, 75-84, and >85), and estimates of surgical volumes for each age subgroup were created RESULTS: ALIF volume is expected to increase from 46,903 to 55,528, while PLF volume is expected to increase from 248,416 to 297,994 from 2020 to 2040. For ALIF, the largest increases are expected in the 45-54 year old (10,316 to 12,216) and 75-84 year old (2,898 to 5,340) age groups. Similarly the largest increases in PLF will be seen in the 65-74 year old (71,087 to 77,786) and 75-84 year old (28,253 to 52,062) age groups. CONCLUSION/CONCLUSIONS:The large increases in expected volumes of ALIF and PLF could necessitate training of more spinal surgeons and an examination of projected costs. Further analyses are needed to characterize the needs of this increasingly large population of surgical patients.
PMID: 32652276
ISSN: 1878-8769
CID: 4527572
Trends in Incidence and Mortality by Hospital Teaching Status and Location in Aneurysmal Subarachnoid Hemorrhage
Neifert, Sean N; Martini, Michael L; Hardigan, Trevor; Ladner, Travis R; Macdonald, R Loch; Oermann, Eric Karl
OBJECTIVE:Few studies have examined the impact of teaching status and location on outcomes in subarachnoid hemorrhage (SAH). The objective of the present study was to compare mortality and functional outcomes between urban teaching, urban nonteaching, and rural centers for hospitalizations with SAH. METHODS:The National Inpatient Sample (NIS) years 2003-2016 was queried for hospitalizations with aneurysmal SAH from 2003 to 2017. Cohorts treated at urban teaching, urban nonteaching, and rural centers were compared with the urban teaching center cohort acting as the reference. The NIS-SOM, a validated measure of SAH functional outcome, was used as a co-primary outcome with mortality. Multivariable models adjusted for age, sex, NIH-SSS score, hypertension, and hospital bedsize. Trends in SAH mortality rates were calculated. RESULTS:There were 379,716 SAH hospitalizations at urban teaching centers, 105,638 at urban nonteaching centers, and 17,165 at rural centers. Adjusted mortality rates for urban teaching centers were lower than urban nonteaching (21.90% vs. 25.00%, p<0.0001) and rural (21.90% vs. 30.90%, p<0.0001) centers. While urban teaching (24.74% to 21.22%) and urban nonteaching (24.78% to 23.68%) had decreases in mortality rates over the study period, rural hospitals showed increased mortality rates (25.67% to 33.38%). CONCLUSIONS:Rural and urban nonteaching centers have higher rates of mortality from SAH than urban teaching centers. Further study is necessary to understand drivers of these differences.
PMID: 32599190
ISSN: 1878-8769
CID: 4503922
Sensor Modalities for Brain-Computer Interface Technology: A Comprehensive Literature Review
Martini, Michael L; Oermann, Eric Karl; Opie, Nicholas L; Panov, Fedor; Oxley, Thomas; Yaeger, Kurt
Brain-computer interface (BCI) technology is rapidly developing and changing the paradigm of neurorestoration by linking cortical activity with control of an external effector to provide patients with tangible improvements in their ability to interact with the environment. The sensor component of a BCI circuit dictates the resolution of brain pattern recognition and therefore plays an integral role in the technology. Several sensor modalities are currently in use for BCI applications and are broadly either electrode-based or functional neuroimaging-based. Sensors vary in their inherent spatial and temporal resolutions, as well as in practical aspects such as invasiveness, portability, and maintenance. Hybrid BCI systems with multimodal sensory inputs represent a promising development in the field allowing for complimentary function. Artificial intelligence and deep learning algorithms have been applied to BCI systems to achieve faster and more accurate classifications of sensory input and improve user performance in various tasks. Neurofeedback is an important advancement in the field that has been implemented in several types of BCI systems by showing users a real-time display of their recorded brain activity during a task to facilitate their control over their own cortical activity. In this way, neurofeedback has improved BCI classification and enhanced user control over BCI output. Taken together, BCI systems have progressed significantly in recent years in terms of accuracy, speed, and communication. Understanding the sensory components of a BCI is essential for neurosurgeons and clinicians as they help advance this technology in the clinical setting.
PMID: 31361011
ISSN: 1524-4040
CID: 4491512
Big Data Defined: A Practical Review for Neurosurgeons
Bydon, Mohamad; Schirmer, Clemens M; Oermann, Eric K; Kitagawa, Ryan S; Pouratian, Nader; Davies, Jason; Sharan, Ashwini; Chambless, Lola B
BACKGROUND:Modern science and healthcare generate vast amounts of data, and, coupled with the increasingly inexpensive and accessible computing, a tremendous opportunity exists to use these data to improve care. A better understanding of data science and its relationship to neurosurgical practice will be increasingly important as we transition into this modern "big data" era. METHODS:A review of the literature was performed for key articles referencing big data for neurosurgical care or related topics. RESULTS:In the present report, we first defined the nature and scope of data science from a technical perspective. We then discussed its relationship to the modern neurosurgical practice, highlighting key references, which might form a useful introductory reading list. CONCLUSIONS:Numerous challenges exist going forward; however, organized neurosurgery has an important role in fostering and facilitating these efforts to merge data science with neurosurgical practice.
PMID: 31562965
ISSN: 1878-8769
CID: 4491542
Intraoperative brain tumour identification with deep learning [Comment]
Martini, Michael L; Oermann, Eric K
PMID: 32099093
ISSN: 1759-4782
CID: 4491552
Commentary: Predicting Long-Term Outcomes After Poor-Grade Aneurysmal Subarachnoid Hemorrhage Using Decision Tree Modeling
Hardigan, Trevor; Kellner, Christopher; Oermann, Eric Karl
PMID: 32195545
ISSN: 1524-4040
CID: 4491562