Try a new search

Format these results:

Searched for:

in-biosketch:true

person:shepht01

Total Results:

123


In vivo quantification of demyelination and recovery using compartment-specific diffusion MRI metrics validated by electron microscopy

Jelescu, Ileana O; Zurek, Magdalena; Winters, Kerryanne V; Veraart, Jelle; Rajaratnam, Anjali; Kim, Nathanael S; Babb, James S; Shepherd, Timothy M; Novikov, Dmitry S; Kim, Sungheon G; Fieremans, Els
There is a need for accurate quantitative non-invasive biomarkers to monitor myelin pathology in vivo and distinguish myelin changes from other pathological features including inflammation and axonal loss. Conventional MRI metrics such as T2, magnetization transfer ratio and radial diffusivity have proven sensitivity but not specificity. In highly coherent white matter bundles, compartment-specific white matter tract integrity (WMTI) metrics can be directly derived from the diffusion and kurtosis tensors: axonal water fraction, intra-axonal diffusivity, and extra-axonal radial and axial diffusivities. We evaluate the potential of WMTI to quantify demyelination by monitoring the effects of both acute (6weeks) and chronic (12weeks) cuprizone intoxication and subsequent recovery in the mouse corpus callosum, and compare its performance with that of conventional metrics (T2, magnetization transfer, and DTI parameters). The changes observed in vivo correlated with those obtained from quantitative electron microscopy image analysis. A 6-week intoxication produced a significant decrease in axonal water fraction (p<0.001), with only mild changes in extra-axonal radial diffusivity, consistent with patchy demyelination, while a 12-week intoxication caused a more marked decrease in extra-axonal radial diffusivity (p=0.0135), consistent with more severe demyelination and clearance of the extra-axonal space. Results thus revealed increased specificity of the axonal water fraction and extra-axonal radial diffusivity parameters to different degrees and patterns of demyelination. The specificities of these parameters were corroborated by their respective correlations with microstructural features: the axonal water fraction correlated significantly with the electron microscopy derived total axonal water fraction (rho=0.66; p=0.0014) but not with the g-ratio, while the extra-axonal radial diffusivity correlated with the g-ratio (rho=0.48; p=0.0342) but not with the electron microscopy derived axonal water fraction. These parameters represent promising candidates as clinically feasible biomarkers of demyelination and remyelination in the white matter.
PMCID:4851889
PMID: 26876473
ISSN: 1095-9572
CID: 1949552

Dixon sequence with superimposed model-based bone compartment provides highly accurate PET/MR attenuation correction of the brain

Koesters, Thomas; Friedman, Kent Parks; Fenchel, Matthias; Zhan, Yiqiang; Hermosillo, Gerardo; Babb, James; Jelescu, Ileana O; Faul, David; Boada, Fernando E; Shepherd, Timothy M
Simultaneous PET/MR of the brain is a promising new technology for characterizing patients with suspected cognitive impairment or epilepsy. Unlike CT though, MR signal intensities do not provide a direct correlate to PET photon attenuation correction (AC) and inaccurate radiotracer standard uptake value (SUV) estimation could limit future PET/MR clinical applications. We tested a novel AC method that supplements standard Dixon-based tissue segmentation with a superimposed model-based bone compartment. METHODS: We directly compared SUV estimation for MR-based AC methods to reference CT AC in 16 patients undergoing same-day, single 18FDG dose PET/CT and PET/MR for suspected neurodegeneration. Three Dixon-based MR AC methods were compared to
PMCID:4896499
PMID: 26837338
ISSN: 1535-5667
CID: 1933112

Accelerated and motion-robust in vivo T mapping from radially undersampled data using bloch-simulation-based iterative reconstruction

Ben-Eliezer, Noam; Sodickson, Daniel K; Shepherd, Timothy; Wiggins, Graham C; Block, Kai Tobias
PURPOSE: Development of a quantitative transverse relaxation time (T2 )-mapping platform that operates at clinically feasible timescales by employing advanced image reconstruction of radially undersampled multi spin-echo (MSE) datasets. METHODS: Data was acquired on phantom and in vivo at 3 Tesla using MSE protocols employing radial k-space sampling trajectories. In order to overcome the nontrivial spin evolution associated with MSE protocols, a numerical signal model was precalculated based on Bloch simulations of the actual pulse-sequence scheme used in the acquisition process. This signal model was subsequently incorporated into an iterative model-based image reconstruction process, producing T2 and proton-density maps. RESULTS: T2 maps of phantom and in vivo brain were successfully constructed, closely matching values produced by a single spin-echo reference scan. High-resolution mapping was also performed for the spinal cord in vivo, differentiating the underlying gray/white matter morphology. CONCLUSION: The presented MSE data-processing framework offers reliable mapping of T2 relaxation values in a approximately 5-minute timescale, free of user- and scanner-dependent variations. The use of radial k-space sampling provides further advantages in the form of high immunity to irregular physiological motion, as well as enhanced spatial resolutions, owing to its inherent ability to perform alias-free limited field-of-view imaging. Magn Reson Med, 2015. (c) 2015 Wiley Periodicals, Inc.
PMCID:4609223
PMID: 25891292
ISSN: 1522-2594
CID: 1543012

Quantitative impact of Dixon mumap variability in dual-time-point brain PET/MR

Jackson, Kimberly; Bartlett, Rachel; Friedman, Kent; Shepherd, Timothy; Koesters, Thomas; Teruel, Jose; Fenchel, Mathias; Hermosillova-Valadez, Gerardo; Faul, David; Boada, Fernando
PMCID:4798694
PMID: 26956335
ISSN: 2197-7364
CID: 2023522

Correlation of white matter damage with amyloid and hippocampal atrophy in normal aging and amnestic Mild Cognitive Impairment (aMCI): an MR-PET study. [Meeting Abstract]

Jelescu, Ileana; Shepherd, Timothy; Novikov, Dmitry; Ding, Yu-Shin; Koesters, Thomas; Friedman, Kent; Galvin, James; Fieremans, Els
ISI:000358738801262
ISSN: 1535-5667
CID: 1734812

Disabling amnestic syndrome following stereotactic laser ablation of a hypothalamic hamartoma in a patient with a prior temporal lobectomy

Zubkov, Sarah; Del Bene, Victor A; MacAllister, William S; Shepherd, Timothy M; Devinsky, Orrin
A 19-year-old man with cortical dysplasia and intractable focal seizures underwent a right temporal lobectomy. A hypothalamic hamartoma was subsequently recognized, and he then underwent MRI-guided stereotactic laser ablation. Unfortunately, he sustained damage to the bilateral medial mammillary bodies and suffered significant memory loss. We review laser ablation therapy for hypothalamic hamartomas and the anatomy of the memory network. We postulate that his persistent memory disorder resulted from a combination of the right temporal lobectomy and injury to the bilateral medial mammillary bodies.
PMCID:4536301
PMID: 26288758
ISSN: 2213-3232
CID: 1732292

Teaching NeuroImages: NMDA encephalomyelitis with MRI abnormalities isolated to ventral spinal cord gray matter

Zubkov, Sarah; Aggarwal Joshi, Puja; Shepherd, Timothy M; Kothare, Sanjeev V
PMCID:4540248
PMID: 26259859
ISSN: 1526-632x
CID: 1720962

Improved FDG kinetic analysis in brain tumors through simultaneous MR/PET acquisition [Meeting Abstract]

Vahle, Anne-Kristin; Koesters, Thomas; Mikheev, Artem; Logan, Jean; Fatterpekar, Girish; Shepherd, Timothy; Glielmi, Christopher; Block, Kai Tobias; Faul, David; Boada, Fernando
ISI:000361438100505
ISSN: 1535-5667
CID: 2544642

185 3-tesla magnetic resonance imaging track density imaging to identify thalamic nuclei for functional neurosurgery

Shepherd, Timothy M; Chung, Sohae; Glielmi, Christopher; Mogilner, Alon Y; Boada, Fernando; Kondziolka, Douglas
INTRODUCTION: Essential tremor can be treated by thalamic stimulation or ablation of the ventral intermediate nucleus (VIM) with good outcomes [1]. Routine magnetic resonance imaging (MRI) cannot distinguish between thalamic nuclei so targeting is based on anatomic atlas-based coordinates. Diffusion MRI-based track density imaging (TDI) can better depict internal thalamic structure [2], but previously has required high-field MRI or long acquisitions that are not clinically practical. We applied multiband diffusion MRI [3] to enable 3-Tesla (3-T) MRI TDI in patients with essential tremor. METHODS: Six patients with essential tremor underwent standard preoperative MRI with an additional multiband diffusion sequence that used 3-slice acceleration factor, 3-mm isotropic image resolution, whole-brain coverage (45 slices) and 256 diffusion gradient directions (b = 2500 s/mm) acquired in 11 minutes. TDI data post-processing generated track density and direction-encoded color maps at 500-micron isotropic super-resolution [2]. RESULTS: Combining TDI and multiband diffusion acquisitions resulted in high-quality images of the human thalamus in typical elderly essential tremor patients using 3-T MRI and clinically feasible scan times. Results also were consistent for repeat imaging in the 3 volunteers. TDI with or without direction-encoding demonstrated some of the internal anatomy of the thalamus, but fiber-orientation maps derived from these data (Fig. 1) were preferred by the 2 participating functional neurosurgeons. CONCLUSION: Multiband diffusion acquisition makes TDI-based parcellation of the thalamus feasible in elderly patients with essential tremor using 3-T MRI. This approach provides at least equivalent data to previous diffusion tractography or TDI approaches for thalamus parcellation, but without long scan times or a 7-Tesla MRI system [4-6]. While planning for gamma knife ablation of VIM for these initial 6 patients still relied on conventional methods, future efforts will focus on validation and careful introduction of TDI-derived thalamic maps to actual surgical planning.
ORIGINAL:0010425
ISSN: 0148-396x
CID: 1899682

Adult brain tumor imaging: state of the art

Bangiyev, Lev; Rossi Espagnet, Maria Camilla; Young, Robert; Shepherd, Timothy; Knopp, Edmond; Friedman, Kent; Boada, Fernando; Fatterpekar, Girish M
PMID: 24342674
ISSN: 0037-198x
CID: 746552