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Towards the characterization of the tumor microenvironment through dictionary learning-based interpretable classification of multiplexed immunofluorescence images
Krishnan, Santhoshi N; Barua, Souptik; Frankel, Timothy L; Rao, Arvind
PMID: 36541756
ISSN: 1361-6560
CID: 5388932
Discordance between postprandial plasma glucose measurement and continuous glucose monitoring
Barua, Souptik; A Wierzchowska-McNew, Raven; Deutz, Nicolaas E P; Sabharwal, Ashutosh
BACKGROUND:There has been growing interest in studying postprandial glucose responses using continuous glucose monitoring (CGM) in nondiabetic individuals. Accurate measurement of glucose responses to meals can facilitate applications such as precision nutrition and early detection of diabetes. OBJECTIVES/OBJECTIVE:We aimed to quantify the discordance between simultaneous postprandial glucose measurements made using plasma and CGM. METHODS:We studied 10 nondiabetic older adults who randomly consumed 9 predefined meals of varying macronutrient compositions. Glucose was measured for 8 h after the meal by the CGM, blood samples for plasma collection were taken regularly, and plasma glucose was quantified using gold-standard laboratory measurement and a fingerstick blood glucose meter. The primary outcome measured was the mean absolute relative difference (MARD) of CGM and fingerstick measurements relative to the gold standard. Secondary outcomes were Bland-Altman statistics, Clarke Error Grid, and time in range metrics. Additional subgroup analyses were performed by stratifying the postprandial glucose measurements based on the macronutrient composition of the meals. RESULTS:When compared against the gold-standard postprandial glucose measurements, the fingerstick meter was more accurate (MARD: 8.0%; 95% CI: 7.6%, 8.6%) than the CGM (MARD: 13.7%; 95% CI: 13.1%, 14.3%; PÂ <Â 0.0001). After the meals, Bland-Altman analysis demonstrated that the CGM underestimated the 8-h gold-standard glucose rise by 12.8Â mg/dL on average (PÂ <Â 0.0001), whereas the fingerstick meter did so by 5.5Â mg/dL on average (PÂ <Â 0.0001). The CGM underestimated the time spent in the 70-180Â mg/dL range (PÂ =Â 0.002) and overestimated the time spent <70Â mg/dL (PÂ <Â 0.0001) compared with the other 2 methods. CONCLUSIONS:We discovered discordance between gold standard, fingerstick, and CGM in measuring plasma glucose concentrations after a meal. Consequently, emerging applications of CGM in healthy individuals, such as precision nutrition and diabetes onset prediction, may need to account for these discordances.This trial was registered at clinicaltrials.gov as NCT04928872.
PMID: 35776949
ISSN: 1938-3207
CID: 5362762
The northeast glucose drift: Stratification of post-breakfast dysglycemia among predominantly Hispanic/Latino adults at-risk or with type 2 diabetes
Souptik, Barua; Ashutosh, Sabharwal; Namino, Glantz; Casey, Conneely; Arianna, Larez; Wendy, Bevier; David, Kerr
BACKGROUND:There is minimal experience in continuous glucose monitoring (CGM) among underserved racial/ethnic minority populations with or at risk of type 2 diabetes (T2D), and therefore a lack of CGM-driven insight for these individuals. We analyzed breakfast-related CGM profiles of free-living, predominantly Hispanic/Latino individuals at-risk of T2D, with pre-T2D, or with non-insulin treated T2D. METHODS:levels into (i) at-risk of T2D, (ii) with pre-T2D, and (iii) with non-insulin treated T2D, wore blinded CGMs for two weeks. We compared valid CGM profiles from 106 of these participants representing glucose response to breakfast using four parameters. FINDINGS/RESULTS: INTERPRETATION/CONCLUSIONS:levels and monitor diabetes progression. FUNDING/BACKGROUND:US Department of Agriculture (Grant #2018-33800-28404), a seed grant from the industry board fees of the NSF Engineering Research Center for Precise Advanced Technologies and Health Systems for Underserved Populations (PATHS-UP) (Award #1648451), and the Elsevier foundation.
PMCID:8703234
PMID: 34988413
ISSN: 2589-5370
CID: 5363552
Physical Activity, Hypoglycemia, and Type 1 Diabetes: A Data-Driven Approach [Meeting Abstract]
Prasanna, Sahana; Barua, Souptik; Johnson, Jeremiah J.; Siller, Alejandro F.; Sabharwal, Ashutosh; Desalvo, Daniel
ISI:000854899300458
ISSN: 0012-1797
CID: 5362882
18FDG positron emission tomography mining for metabolic imaging biomarkers of radiation-induced xerostomia in patients with oropharyngeal cancer
Elhalawani, Hesham; Cardenas, Carlos E; Volpe, Stefania; Barua, Souptik; Stieb, Sonja; Rock, Calvin B; Lin, Timothy; Yang, Pei; Wu, Haijun; Zaveri, Jhankruti; Elgohari, Baher; Abdallah, Lamiaa E; Jethanandani, Amit; Mohamed, Abdallah S R; Court, Laurence E; Hutcheson, Katherine A; Brandon Gunn, G; Rosenthal, David I; Frank, Steven J; Garden, Adam S; Rao, Arvind; Fuller, Clifton D
PURPOSE/OBJECTIVE:FDG-PET to develop metabolic imaging biomarkers (MIBs) of RT-related parotid injury. METHODS:FDG activity and dose grid were performed. Ipsilateral (Ipsi) and contralateral (contra) parotid glands were sub-segmented based on the received dose in 5 Gy increments, i.e. 0-5 Gy, 5-10 Gy sub-volumes, etc. Median and dose-weighted SUV were extracted from whole parotid volumes and sub-volumes on pre- & post-RT PET scans, using in-house code that runs on MATLAB. Wilcoxon signed-rank and Kruskal-Wallis tests were used to test differences pre- and post-RT. RESULTS:432 parotid glands, belonging to 108 OPC patients treated with RT, were sub-segmented & analyzed. Xero 3-6 ms was reported as: non-severe (78.7%) and severe (21.3%). SUV- median values were significantly reduced post-RT, irrespective of laterality (p = 0.02). A similar pattern was observed in parotid sub-volumes, especially ipsi parotid gland sub-volumes receiving doses 10-50 Gy (p < 0.05). Kruskal-Wallis test showed a significantly higher mean RT dose in the contra parotid in the patients with more severe Xero 3-6mo (p = 0.03). Multiple logistic regression showed a combined clinical-dosimetric-metabolic imaging model could predict the severity of Xero 3-6mo; AUC = 0.78 (95%CI: 0.66-0.85; p < 0.0001). CONCLUSION/CONCLUSIONS:FDG-PET metrics of parotid glands in patients with OPC. Temporal dynamics of PET-derived metrics can potentially serve as MIBs of RT-related xerostomia in concert with clinical and dosimetric variables.
PMCID:8239739
PMID: 34195391
ISSN: 2405-6308
CID: 5362752
Dysglycemia in adults at risk for or living with non-insulin treated type 2 diabetes: Insights from continuous glucose monitoring
Barua, Souptik; Sabharwal, Ashutosh; Glantz, Namino; Conneely, Casey; Larez, Arianna; Bevier, Wendy; Kerr, David
BACKGROUND:Continuous glucose monitoring (CGM) has demonstrable benefits for people living with diabetes, but the supporting evidence is almost exclusively from White individuals with type 1 diabetes. Here, we have quantified CGM profiles in Hispanic/Latino adults with or at-risk of non-insulin treated type 2 diabetes (T2D). METHODS:100 participants (79 female, 86% Hispanic/Latino [predominantly Mexican], age 54·6 [±12·0] years) stratified into (i) at risk of T2D, (ii) with pre-diabetes (pre-T2D), and (iii) with non-insulin treated T2D, wore blinded CGMs for 2 weeks. Beyond standardized CGM measures (average glucose, glucose variability, time in 70-140 mg/dL and 70-180 mg/dL ranges), we also examined additional CGM measures based on the time of day. FINDINGS/RESULTS:<0·0001). INTERPRETATION/CONCLUSIONS:Standardized CGM measures show a progression of dysglycemia from at-risk of T2D, to pre-T2D, and to T2D. Stratifying CGM readings by time of day and the range 140-180 mg/dL provides additional metrics to differentiate between the groups. FUNDING/BACKGROUND:US Department of Agriculture (Grant #2018-33800-28404) and NSF PATHS-UP ERC (Award #1648451).
PMCID:8093893
PMID: 33997745
ISSN: 2589-5370
CID: 5362742
Stabilized epithelial phenotype of cancer cells in primary tumors leads to increased colonization of liver metastasis in pancreatic cancer
Carstens, Julienne L; Yang, Sujuan; Correa de Sampaio, Pedro; Zheng, Xiaofeng; Barua, Souptik; McAndrews, Kathleen M; Rao, Arvind; Burks, Jared K; Rhim, Andrew D; Kalluri, Raghu
Pancreatic ductal adenocarcinoma (PDAC) is therapeutically recalcitrant and metastatic. Partial epithelial to mesenchymal transition (EMT) is associated with metastasis; however, a causal connection needs further unraveling. Here, we use single-cell RNA sequencing and genetic mouse models to identify the functional roles of partial EMT and epithelial stabilization in PDAC growth and metastasis. A global EMT expression signature identifies ∼50 cancer cell clusters spanning the epithelial-mesenchymal continuum in both human and murine PDACs. The combined genetic suppression of Snail and Twist results in PDAC epithelial stabilization and increased liver metastasis. Genetic deletion of Zeb1 in PDAC cells also leads to liver metastasis associated with cancer cell epithelial stabilization. We demonstrate that epithelial stabilization leads to the enhanced collective migration of cancer cells and modulation of the immune microenvironment, which likely contribute to efficient liver colonization. Our study provides insights into the diverse mechanisms of metastasis in pancreatic cancer and potential therapeutic targets.
PMCID:8078733
PMID: 33852841
ISSN: 2211-1247
CID: 5362722
Computed Tomography Radiomics Kinetics as Early Imaging Correlates of Osteoradionecrosis in Oropharyngeal Cancer Patients
Barua, Souptik; Elhalawani, Hesham; Volpe, Stefania; Al Feghali, Karine A; Yang, Pei; Ng, Sweet Ping; Elgohari, Baher; Granberry, Robin C; Mackin, Dennis S; Gunn, G Brandon; Hutcheson, Katherine A; Chambers, Mark S; Court, Laurence E; Mohamed, Abdallah S R; Fuller, Clifton D; Lai, Stephen Y; Rao, Arvind
Osteoradionecrosis (ORN) is a major side-effect of radiation therapy in oropharyngeal cancer (OPC) patients. In this study, we demonstrate that early prediction of ORN is possible by analyzing the temporal evolution of mandibular subvolumes receiving radiation. For our analysis, we use computed tomography (CT) scans from 21 OPC patients treated with Intensity Modulated Radiation Therapy (IMRT) with subsequent radiographically-proven ≥ grade II ORN, at three different time points: pre-IMRT, 2-months, and 6-months post-IMRT. For each patient, radiomic features were extracted from a mandibular subvolume that developed ORN and a control subvolume that received the same dose but did not develop ORN. We used a Multivariate Functional Principal Component Analysis (MFPCA) approach to characterize the temporal trajectories of these features. The proposed MFPCA model performs the best at classifying ORN vs. Control subvolumes with an area under curve (AUC) = 0.74 [95% confidence interval (C.I.): 0.61-0.90], significantly outperforming existing approaches such as a pre-IMRT features model or a delta model based on changes at intermediate time points, i.e., at 2- and 6-month follow-up. This suggests that temporal trajectories of radiomics features derived from sequential pre- and post-RT CT scans can provide markers that are correlates of RT-induced mandibular injury, and consequently aid in earlier management of ORN.
PMCID:8063205
PMID: 33898983
ISSN: 2624-8212
CID: 5362732
18FDG Positron Emission Tomography Mining for Metabolic Imaging Biomarkers of Radiation-induced Xerostomia in Patients with Oropharyngeal Cancer [Meeting Abstract]
Fuller, Clifton; Elhalawani, Hesham; Cardenas, Carlos; Volpe, Stefania; Barua, Souptik; Stieb, Sonja; Rock, Calvin; Lin, Timothy; Yang, Pei; Wu, Haijun; Zaveri, Jhankruti; Elgohari, Baher; Abdallah, Lamiaa; Jethanandani, Amit; Mohamed, Abdallah S. R.; Court, Laurence E.; Hutcheson, Katherine; Gunn, Gary; Rosenthal, David; Frank, Steven; Garden, Adam; Rao, Arvind
ISI:000701779700130
ISSN: 0277-3732
CID: 5362852
Epithelial/mesenchymal identity dictates pancreatic cancer cell metastasis. [Meeting Abstract]
Carstens, Julienne L.; Yang, Sujuan; de Sampaio, Pedro Correa; Zheng, Xiaofeng; Barua, Souptik; McAndrews, Kathleen M.; Rao, Arvind; Burks, Jared K.; Rhim, Andrew D.; Kalluri, Raghu
ISI:000720117400076
ISSN: 0008-5472
CID: 5362862