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Accelerating multi-coil MR image reconstruction using weak supervision
Atalık, Arda; Chopra, Sumit; Sodickson, Daniel K
Deep-learning-based MR image reconstruction in settings where large fully sampled dataset collection is infeasible requires methods that effectively use both under-sampled and fully sampled datasets. This paper evaluates a weakly supervised, multi-coil, physics-guided approach to MR image reconstruction, leveraging both dataset types, to improve both the quality and robustness of reconstruction. A physics-guided end-to-end variational network (VarNet) is pretrained in a self-supervised manner using a 4
PMID: 39382814
ISSN: 1352-8661
CID: 5730182
DeepEMC-T2 mapping: Deep learning-enabled T2 mapping based on echo modulation curve modeling
Pei, Haoyang; Shepherd, Timothy M; Wang, Yao; Liu, Fang; Sodickson, Daniel K; Ben-Eliezer, Noam; Feng, Li
PURPOSE/OBJECTIVE:maps from fewer echoes. METHODS:mapping was evaluated in seven experiments. RESULTS:estimation. CONCLUSIONS:estimation from fewer echoes allows for increased volumetric coverage and/or higher slice resolution without prolonging total scan times.
PMCID:11436299
PMID: 39129209
ISSN: 1522-2594
CID: 5706952
The perils and the promise of whole-body MRI: why we may be debating the wrong things
Sodickson, Daniel K
PMID: 39251175
ISSN: 1558-349x
CID: 5690082
An experimental system for detection and localization of hemorrhage using ultra-wideband microwaves with deep learning
Hedayati, Eisa; Safari, Fatemeh; Verghese, George; Ciancia, Vito R; Sodickson, Daniel K; Dehkharghani, Seena; Alon, Leeor
Stroke is a leading cause of mortality and disability. Emergent diagnosis and intervention are critical, and predicated upon initial brain imaging; however, existing clinical imaging modalities are generally costly, immobile, and demand highly specialized operation and interpretation. Low-energy microwaves have been explored as a low-cost, small form factor, fast, and safe probe for tissue dielectric properties measurements, with both imaging and diagnostic potential. Nevertheless, challenges inherent to microwave reconstruction have impeded progress, hence conduction of microwave imaging remains an elusive scientific aim. Herein, we introduce a dedicated experimental framework comprising a robotic navigation system to translate blood-mimicking phantoms within a human head model. An 8-element ultra-wideband array of modified antipodal Vivaldi antennas was developed and driven by a two-port vector network analyzer spanning 0.6-9.0 GHz at an operating power of 1 mW. Complex scattering parameters were measured, and dielectric signatures of hemorrhage were learned using a dedicated deep neural network for prediction of hemorrhage classes and localization. An overall sensitivity and specificity for detection >0.99 was observed, with Rayleigh mean localization error of 1.65 mm. The study establishes the feasibility of a robust experimental model and deep learning solution for ultra-wideband microwave stroke detection.
PMID: 39242634
ISSN: 2731-3395
CID: 5688452
Preliminary Experience with Three Alternative Motion Sensors for 0.55 Tesla MR Imaging
Tibrewala, Radhika; Brantner, Douglas; Brown, Ryan; Pancoast, Leanna; Keerthivasan, Mahesh; Bruno, Mary; Block, Kai Tobias; Madore, Bruno; Sodickson, Daniel K; Collins, Christopher M
Due to limitations in current motion tracking technologies and increasing interest in alternative sensors for motion tracking both inside and outside the MRI system, in this study we share our preliminary experience with three alternative sensors utilizing diverse technologies and interactions with tissue to monitor motion of the body surface, respiratory-related motion of major organs, and non-respiratory motion of deep-seated organs. These consist of (1) a Pilot-Tone RF transmitter combined with deep learning algorithms for tracking liver motion, (2) a single-channel ultrasound transducer with deep learning for monitoring bladder motion, and (3) a 3D Time-of-Flight camera for observing the motion of the anterior torso surface. Additionally, we demonstrate the capability of these sensors to simultaneously capture motion data outside the MRI environment, which is particularly relevant for procedures like radiation therapy, where motion status could be related to previously characterized cyclical anatomical data. Our findings indicate that the ultrasound sensor can track motion in deep-seated organs (bladder) as well as respiratory-related motion. The Time-of-Flight camera offers ease of interpretation and performs well in detecting surface motion (respiration). The Pilot-Tone demonstrates efficacy in tracking bulk respiratory motion and motion of major organs (liver). Simultaneous use of all three sensors could provide complementary motion information outside the MRI bore, providing potential value for motion tracking during position-sensitive treatments such as radiation therapy.
PMCID:11207459
PMID: 38931494
ISSN: 1424-8220
CID: 5698062
FastMRI Prostate: A public, biparametric MRI dataset to advance machine learning for prostate cancer imaging
Tibrewala, Radhika; Dutt, Tarun; Tong, Angela; Ginocchio, Luke; Lattanzi, Riccardo; Keerthivasan, Mahesh B; Baete, Steven H; Chopra, Sumit; Lui, Yvonne W; Sodickson, Daniel K; Chandarana, Hersh; Johnson, Patricia M
Magnetic resonance imaging (MRI) has experienced remarkable advancements in the integration of artificial intelligence (AI) for image acquisition and reconstruction. The availability of raw k-space data is crucial for training AI models in such tasks, but public MRI datasets are mostly restricted to DICOM images only. To address this limitation, the fastMRI initiative released brain and knee k-space datasets, which have since seen vigorous use. In May 2023, fastMRI was expanded to include biparametric (T2- and diffusion-weighted) prostate MRI data from a clinical population. Biparametric MRI plays a vital role in the diagnosis and management of prostate cancer. Advances in imaging methods, such as reconstructing under-sampled data from accelerated acquisitions, can improve cost-effectiveness and accessibility of prostate MRI. Raw k-space data, reconstructed images and slice, volume and exam level annotations for likelihood of prostate cancer are provided in this dataset for 47468 slices corresponding to 1560 volumes from 312 patients. This dataset facilitates AI and algorithm development for prostate image reconstruction, with the ultimate goal of enhancing prostate cancer diagnosis.
PMID: 38643291
ISSN: 2052-4463
CID: 5726322
Brain-implanted conductors amplify radiofrequency fields in rodents: Advantages and risks
Vöröslakos, Mihály; Yaghmazadeh, Omid; Alon, Leeor; Sodickson, Daniel K; Buzsáki, György
Over the past few decades, daily exposure to radiofrequency (RF) fields has been increasing due to the rapid development of wireless and medical imaging technologies. Under extreme circumstances, exposure to very strong RF energy can lead to heating of body tissue, even resulting in tissue injury. The presence of implanted devices, moreover, can amplify RF effects on surrounding tissue. Therefore, it is important to understand the interactions of RF fields with tissue in the presence of implants, in order to establish appropriate wireless safety protocols, and also to extend the benefits of medical imaging to increasing numbers of people with implanted medical devices. This study explored the neurological effects of RF exposure in rodents implanted with neuronal recording electrodes. We exposed freely moving and anesthetized rats and mice to 950 MHz RF energy while monitoring their brain activity, temperature, and behavior. We found that RF exposure could induce fast onset firing of single neurons without heat injury. In addition, brain implants enhanced the effect of RF stimulation resulting in reversible behavioral changes. Using an optical temperature measurement system, we found greater than tenfold increase in brain temperature in the vicinity of the implant. On the one hand, our results underline the importance of careful safety assessment for brain-implanted devices, but on the other hand, we also show that metal implants may be used for neurostimulation if brain temperature can be kept within safe limits.
PMCID:10947979
PMID: 37876116
ISSN: 1521-186x
CID: 5639612
Computational methods for the estimation of ideal current patterns in realistic human models
Giannakopoulos, Ilias I; Georgakis, Ioannis P; Sodickson, Daniel K; Lattanzi, Riccardo
PURPOSE/OBJECTIVE:To introduce a method for the estimation of the ideal current patterns (ICP) that yield optimal signal-to-noise ratio (SNR) for realistic heterogeneous tissue models in MRI. THEORY AND METHODS/METHODS:The ICP were calculated for different surfaces that resembled typical radiofrequency (RF) coil formers. We constructed numerical electromagnetic (EM) bases to accurately represent EM fields generated by RF current sources located on the current-bearing surfaces. Using these fields as excitations, we solved the volume integral equation and computed the EM fields in the sample. The fields were appropriately weighted to calculate the optimal SNR and the corresponding ICP. We demonstrated how to qualitatively use ICP to guide the design of a coil array to maximize SNR inside a head model. RESULTS: CONCLUSION/CONCLUSIONS:ICP can be calculated for human tissue models, potentially guiding the design of application-specific RF coil arrays.
PMID: 37800398
ISSN: 1522-2594
CID: 5617622
An experimental system for detection and localization of hemorrhage using ultra-wideband microwaves with deep learning
Hedayati, Eisa; Safari, Fatemeh; Verghese, George; Ciancia, Vito R; Sodickson, Daniel K; Dehkharghani, Seena; Alon, Leeor
Stroke is a leading cause of mortality and disability. Emergent diagnosis and intervention are critical, and predicated upon initial brain imaging; however, existing clinical imaging modalities are generally costly, immobile, and demand highly specialized operation and interpretation. Low-energy microwaves have been explored as low-cost, small form factor, fast, and safe probes of tissue dielectric properties, with both imaging and diagnostic potential. Nevertheless, challenges inherent to microwave reconstruction have impeded progress, hence microwave imaging (MWI) remains an elusive scientific aim. Herein, we introduce a dedicated experimental framework comprising a robotic navigation system to translate blood-mimicking phantoms within an anatomically realistic human head model. An 8-element ultra-wideband (UWB) array of modified antipodal Vivaldi antennas was developed and driven by a two-port vector network analyzer spanning 0.6-9.0 GHz at an operating power of 1 mw. Complex scattering parameters were measured, and dielectric signatures of hemorrhage were learned using a dedicated deep neural network for prediction of hemorrhage classes and localization. An overall sensitivity and specificity for detection >0.99 was observed, with Rayliegh mean localization error of 1.65 mm. The study establishes the feasibility of a robust experimental model and deep learning solution for UWB microwave stroke detection.
PMID: 37873017
ISSN: 2331-8422
CID: 5892482
Low-field MRI: A report on the 2022 ISMRM workshop
Campbell-Washburn, Adrienne E; Keenan, Kathryn E; Hu, Peng; Mugler, John P; Nayak, Krishna S; Webb, Andrew G; Obungoloch, Johnes; Sheth, Kevin N; Hennig, Jürgen; Rosen, Matthew S; Salameh, Najat; Sodickson, Daniel K; Stein, Joel M; Marques, José P; Simonetti, Orlando P
In March 2022, the first ISMRM Workshop on Low-Field MRI was held virtually. The goals of this workshop were to discuss recent low field MRI technology including hardware and software developments, novel methodology, new contrast mechanisms, as well as the clinical translation and dissemination of these systems. The virtual Workshop was attended by 368 registrants from 24 countries, and included 34 invited talks, 100 abstract presentations, 2 panel discussions, and 2 live scanner demonstrations. Here, we report on the scientific content of the Workshop and identify the key themes that emerged. The subject matter of the Workshop reflected the ongoing developments of low-field MRI as an accessible imaging modality that may expand the usage of MRI through cost reduction, portability, and ease of installation. Many talks in this Workshop addressed the use of computational power, efficient acquisitions, and contemporary hardware to overcome the SNR limitations associated with low field strength. Participants discussed the selection of appropriate clinical applications that leverage the unique capabilities of low-field MRI within traditional radiology practices, other point-of-care settings, and the broader community. The notion of "image quality" versus "information content" was also discussed, as images from low-field portable systems that are purpose-built for clinical decision-making may not replicate the current standard of clinical imaging. Speakers also described technical challenges and infrastructure challenges related to portability and widespread dissemination, and speculated about future directions for the field to improve the technology and establish clinical value.
PMID: 37345725
ISSN: 1522-2594
CID: 5542822