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Robust fully automated shimming of the human brain for high-field 1H spectroscopic imaging
Hetherington, Hoby P; Chu, Wen-Jang; Gonen, Oded; Pan, Jullie W
Although a variety of methods have been proposed to provide automated adjustment of shim homogeneity, these methods typically fail or require large numbers of iterations in vivo when applied to regions with poor homogeneity, such as the temporal lobe. These limitations are largely due to 1) the limited accuracy of single evolution time measurements when full B0 mapping studies are used, and 2) inaccuracies arising from projection-based methods when the projections pass through regions where the inhomogeneity exceeds the order of the fitted parameters. To overcome these limitations we developed a novel B0 mapping method using multiple evolution times with a novel unwrapping scheme in combination with a user-defined ROI selection tool. We used these methods at 4T on 10 control subjects to obtain high-resolution spectroscopic images of glutamate from the bilateral hippocampi
PMID: 16767750
ISSN: 0740-3194
CID: 71945
Reducing voxel bleed in Hadamard-encoded MRI and MRS
Goelman, Gadi; Liu, Songtao; Gonen, Oded
The point spread function (PSF) of Hadamard encoding deviates from its ideal profile due to practical (as opposed to intrinsic) reasons. Finite radiofrequency (RF) pulse length and gradient strength cause slice profile imperfections that lead to cross-talk ('voxel bleed') as large as 17% for a 1-KHz bandwidth, 5.12-ms RF pulse under 3 mT/m. This could adversely affect localization and quantification, and consequently clinical usefulness. A simple modification of the Hadamard RF pulse synthesis that exploits its unique ability to encode noncontiguous slices is proposed and shown to markedly improve the PSF. Computer simulation, in vitro and in vivo experiments confirm the theoretical derivation of voxel bleed reduction from approximately 17% to below 5% per Hadamard-encoded direction
PMID: 16685718
ISSN: 0740-3194
CID: 68979
Field, coil, and echo-time influence on sensitivity and reproducibility of brain proton MR spectroscopy
Inglese, M; Spindler, M; Babb, J S; Sunenshine, P; Law, M; Gonen, O
BACKGROUND AND PURPOSE: Clinical MR imaging scanners now offer many choices of hardware configurations that were not available in the first 25 years of their existence. Our goal was to assess the influence of coil technology, magnetic field strength, and echo time (TE) on the sensitivity, reflected by the signal intensity-to-noise-ratio (SNR) and reproducibility of proton MR spectroscopy (1H-MR spectroscopy). MATERIAL AND METHODS: The SNR, the intersubject reproducibility, and the intrasubject reproducibility of N-acetylaspartate (NAA), creatine (Cr), and choline (Cho) levels were compared at the common TEs of 30, 144, and 288 ms, by using 1H-MR spectroscopy in 6 volunteers at (1) 3T with a single-element quadrature (SEQ); (2) 1.5T with SEQ; and (3) 1.5T with a 12-channel phased-array (PA) head coil. RESULTS: In terms of sensitivity, the best SNR for all metabolites was obtained at the shortest TE (30 ms). It was comparable between the 3 and 1.5T with the PA, but approximately 35% better than the 1.5T with SEQ. This SNR difference declined <25% at TE of 144 ms and to equity among all imagers at TE of 288 ms. Reproducibility, reflected in the coefficient of variation (CV), was best for NAA at TE of 288 ms, 15%-50% better than at TE of 30 ms in either gray (GM) or white matter (WM). The CV for Cr was best, at TE of 288 ms for GM, but its WM results were independent of TE. Metabolite level reproducibility did not depend on coil technology or magnetic field strength. CONCLUSIONS: For the same coil type, the SNR of all major metabolites was approximately 35% better at 3T than at 1.5T. This advantage, however, was offset at 1.5T with a PA coil, making it a cost-effective upgrade for existing scanners. Surprisingly and counterintuitively, despite the lowest SNR, the best reproducibility was obtained at the longest TE (288 ms), regardless of field or coil
PMID: 16552016
ISSN: 0195-6108
CID: 64183
Clinical significance of dilated Virchow-Robin spaces in mild traumatic brain injury
Inglese, Matilde; Grossman, Robert I; Diller, Leonard; Babb, James S; Gonen, Oded; Silver, Jonathan M A; Rusinek, Henry
PRIMARY OBJECTIVE: To investigate the relationship between the number of dilated Virchow-Robin spaces (VRS) and neurocognitive findings in patients with traumatic brain injury (TBI). RESEARCH DESIGN: Thirty-eight patients with TBI and 21 controls were studied. METHODS AND PROCEDURES: Fifteen patients underwent MRI within a mean interval of 5.4 (range 1-12) days from the brain injury and 23 after an average period of 5.5 (range 0.2-31) years. All subjects were examined with a battery of 13 neuropsychological tests (NP). MAIN OUTCOMES AND RESULTS: The average number of VRS was significantly higher in patients than in controls. There were no significant differences between patients and controls in terms of NP tests. The number of VRS showed a significant inverse correlation with processing speed and a positive correlation with visual perceptual of attention only in patients studied within a short delay of trauma. CONCLUSIONS: VRS are not directly associated to neurocognitive findings, suggesting that they may represent a result of the shear-strain injury
PMID: 16403696
ISSN: 0269-9052
CID: 66693
Preliminary studies regarding the application of localized fluorine magnetic resonance spectroscopy (19F-MRS) at ultra high magnetic field (7 Tesla), for non invasive, in vivo monitoring of gemcitabine and its active anabolic by-product tri-phosphate (dFdCTP) in human pancreatic cancer cells [Meeting Abstract]
Liebes, LF; Gonen, O; Mendoza, S; Zolaratov, A; Hochster, H
ISI:000234382701119
ISSN: 1078-0432
CID: 62404
Assessing global invasion of newly diagnosed glial tumors with whole-brain proton MR spectroscopy
Cohen, Benjamin A; Knopp, Edmond A; Rusinek, Henry; Babb, James S; Zagzag, David; Gonen, Oded
BACKGROUND AND PURPOSE: Because of their invasive nature, high-grade glial tumors are uniformly fatal. The purpose of this study was to quantify MR imaging-occult, glial tumor infiltration beyond its radiologic margin through its consequent neuronal cell damage, assessed by the global concentration decline of the neuronal marker N-acetylaspartate (NAA). METHODS: Seventeen patients (10 men; median age, 39 years; age range, 23-79 years) with radiologically suspected (later pathologically confirmed) supratentorial glial neoplasms, and 17 age- and sex-matched controls were studied. Their whole-brain NAA (WBNAA) amounts were obtained with proton MR spectroscopy: for patients on the day of surgery (n = 17), 1 day postsurgery (n = 15), and once for each control. To convert into concentrations, suitable for intersubject comparison, patients' global NAA amounts were divided by their brain volumes segmented from MR imaging. Least squares regression was used to analyze the data. RESULTS: Pre- and postoperative WBNAA (mean +/- SD) of 9.2 +/- 2.1 and 9.7 +/- 1.8 mmol/L, respectively, in patients were indistinguishable (P = .369) but significantly lower than in controls (12.5 +/- 1.4 mmol/L). Mean resected tumor size (n = 15) was approximately 3% of total brain volume. CONCLUSION: The average 26% WBNAA deficit in the patients, which persisted following surgical resection, cannot be explained merely by depletion within the approximately 3% MR imaging-visible tumor volume or an age-dependent effect. Although there could be several possible causes of such widespread decline--perineuronal satellitosis, neuronal deafferentation, Wallerian and retrograde degeneration, vasogenic edema, functional diaschisis, secondary vascular changes--most are a direct or indirect reflection of extensive, MR imaging-occult, microscopic tumor cell infiltration, diffusely throughout the otherwise 'normal-appearing' brain
PMID: 16219818
ISSN: 0195-6108
CID: 61241
Brain compression without global neuronal loss in meningiomas: whole-brain proton MR spectroscopy report of 2 cases [Case Report]
Cohen, Benjamin A; Knopp, Edmond A; Rusinek, Henry; Liu, Songtao; Gonen, Oded
We report the findings from whole-brain proton MR spectroscopy, quantifying the neuronal marker N-acetylaspartate (NAA), for 2 presurgical meningioma patients and 10 healthy controls. The patients' whole-brain NAA (WBNAA) concentrations were considerably elevated (3+ SDs) compared with healthy controls when excluding the tumors from brain volume; WBNAA levels normalized following correction to approximate 'preneoplastic' brain size. These results suggest global neuronal preservation in these 2 patients while their brains were compressed by large, slowly growing, extra-axial masses
PMCID:3190495
PMID: 16219819
ISSN: 0195-6108
CID: 61240
MR imaging and proton spectroscopy of neuronal injury in late-onset GM2 gangliosidosis
Inglese, Matilde; Nusbaum, Annette O; Pastores, Gregory M; Gianutsos, John; Kolodny, Edwin H; Gonen, Oded
BACKGROUND AND PURPOSE: Despite the ubiquity of G(M2) gangliosides accumulation in patients with late-onset G(M2) gangliosidosis (G(M2)G), the only clinical MR imaging-apparent brain abnormality is profound cerebellar atrophy. The goal of this study was to detect the presence and assess the extent of neuroaxonal injury in the normal-appearing gray and white matter (NAGM and NAWM) of these patients. METHODS: During a single imaging session, 9 patients with late-onset G(M2)G and 8 age-matched normal volunteers underwent the following protocol: (1) T1- and T2-weighted and fluid-attenuated inversion recovery MR images, as well as (2) multivoxel proton MR spectroscopy (1H-MR spectroscopy) to quantify the distribution of the n-acetylaspartate (NAA), creatine (Cr), and choline (Cho), were obtained. RESULTS: The patients' NAA levels in the thalamus (6.5 +/- 1.9 mmol/L) and NAWM (5.8 +/- 2.1 mmol/L) were approximately 40% lower than the controls' (P = .003 and P = .005), whereas the Cr and Cho reductions ( approximately 30% and approximately 26%) did not reach significance (P values of .06-.1). All cerebellar metabolites, especially NAA and Cr, were much (30%-90%) lower in the patients, which reflects the atrophy. CONCLUSION: In late-onset G(M2)G, NAA decreases are detectable in NAGM and NAWM even absent morphologic (MR imaging) abnormalities. Because the accumulation of G(M2) gangliosides can be reduced pharmacologically, 1H-MR spectroscopy might be a sensitive and specific for detecting and quantifying neuroaxonal injury and monitoring response to emerging treatments
PMID: 16155156
ISSN: 0195-6108
CID: 61242
Structural and functional neuroimaging of pediatric depression
Gabbay, Vilma; Silva, Raul R; Castellanos, F. Xavier; Rabinovitz, Beth; Gonen, Oded
Pediatric major depressive disorder (MDD) is a common disease associated with significant morbidity and mortality. Newly available noninvasive neuroimaging techniques provide unique opportunities to illuminate the underlying neurobiological factors of MDD. This article reviews structural and functional neuroimaging data in pediatric MDD. In general, neuroimaging studies in pediatric MDD tend to confirm findings in adult depression implicating the prefrontal cortex, amygdala, and hippocampus. These brain regions are linked and believed to be critical in modulating emotional responses. However, neuroimaging research in pediatric MDD is still in its infancy, and inconsistencies are rife. These inconsistencies are largely due to the small samples and lack of agreement regarding methodology in ascertainment as well as in imaging. Greater focus on careful delineation of clinically and neurobiologically defined subgroups will likely lead to improved understanding of the pathophysiology of MDD. (journal abstract)
PSYCH:2005-12583-015
ISSN: 1082-6319
CID: 62648
Diffuse axonal injury in mild traumatic brain injury: a diffusion tensor imaging study
Inglese, Matilde; Makani, Sachin; Johnson, Glyn; Cohen, Benjamin A; Silver, Jonathan A; Gonen, Oded; Grossman, Robert I
OBJECT: Diffuse axonal injury (DAI) is a major complication of traumatic brain injury (TBI) that leads to functional and psychological deficits. Although DAI is frequently underdiagnosed by conventional imaging modalities, it can be demonstrated using diffusion tensor imaging. The aim of this study was to assess the presence and extent of DAI in patients with mild TBI. METHODS: Forty-six patients with mild TBI and 29 healthy volunteers underwent a magnetic resonance (MR) imaging protocol including: dual-spin echo, fluid-attenuated inversion recovery, T2-weighted gradient echo, and diffusion tensor imaging sequences. In 20 of the patients, MR imaging was performed at a mean of 4.05 days after injury. In the remaining 26, MR imaging was performed at a mean of 5.7 years after injury. In each case, mean diffusivity and fractional anisotropy were measured using both whole-brain histograms and regions of interest analysis. No differences in any of the histogram-derived measures were found between patients and control volunteers. Compared with controls, a significant reduction of fractional anisotropy was observed in patients' corpus callosum, internal capsule, and centrum semiovale, and there were significant increases of mean diffusivity in the corpus callosum and internal capsule. Neither histogram-derived nor regional diffusion tensor imaging metrics differed between the two groups. CONCLUSIONS: Although mean diffusivity and fractional anisotropy abnormalities in these patients with TBI were too subtle to be detected with the whole-brain histogram analysis, they are present in brain areas that are frequent sites of DAI. Because diffusion tensor imaging changes are present at both early and late time points following injury, they may represent an early indicator and a prognostic measure of subsequent brain damage.
PMID: 16175860
ISSN: 0022-3085
CID: 58178