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Gene expression profiling using the terminal continuation (TC) RNA amplification method for small input samples in neuroscience

Chapter by: Ginsberg, SD; Alldred, MJ; Che, S
in: Expression profiling in neuroscience by Karamanos, Yannis [Eds]
New York : Humana Press, c2012
pp. 21-33
ISBN: 9781617794476
CID: 448622

Circulating Abeta40 negatively influences plasma BDNF levels [Meeting Abstract]

Pomara, N; Bruno, D; Pillai, A; Nierenberg, J J; Ginsberg, S D; Mehta, P D; Zetterberg, H; Blennow, K; Buckley, P F
Background: Reductions in brain-derived neurotrophic factor (BDNF) have been implicated in the pathophysiology of depression. Nevertheless, the factors influencing central and peripheral BDNF levels are still poorly understood. Cerebral microvascular endothelial cells are known to be a major source of BDNF within the brain. Exposure of these cells to amyloid beta (Abeta), which may play a role in the pathophysiology of late-life depression, results in cell death or injury with significant reductions in BDNF secretion. Moreover, in rodents, infusion of Abeta40 into the carotid artery resulted in a disruption of endothelial cells, which was not observed with Abeta42 infusion. Therefore, we hypothesized that concentrations of plasma Abeta40, but not Abeta42, would have a negative effect on plasma BDNF levels. Methods: We examined BDNF and Abeta levels in plasma via immunoblotting and ELISA assays, respectively, from 88 subjects with intact cognition (no dementia and a Mini-Mental State Exam score of at least 28) and no gross MRI abnormalities other than white matter hyperintensities. As these subjects were originally recruited for a study on major depressive disorder (MDD), 45 had MDD and 43 were age-matched controls. Results: Consistent with our prediction, Abeta40 levels were inversely correlated with BDNF concentrations (p<.001), whereas Abeta42 levels were independent of BDNF expression (p=.231). This pattern was similar when MDD and control subjects were analyzed separately. Discussion: Our results are consistent with the hypothesis that cerebral endothelial cells are a contributing source of peripheral BDNF and that their disruption by circulating Abeta40 results in reduction in BDNF. However, these preliminary findings need confirmation, and the mechanisms for our observation, including Abeta40-induced cerebral endothelial cell dysfunction, will have to be clarified
EMBASE:70607253
ISSN: 0893-133x
CID: 463332

Differential regulation of catechol-O-methyltransferase expression in a mouse model of aggression

Ginsberg SD; Che S; Hashim A; Zavadil J; Cancro R; Lee SH; Petkova E; Sershen HW; Volavka J
This study was designed to understand molecular and cellular mechanisms underlying aggressive behaviors in mice exposed to repeated interactions in their homecage with conspecifics. A resident-intruder procedure was employed whereby two males were allowed to interact for 10 min trials, and aggressive and/or submissive behaviors (e.g., degree of attacking, biting, chasing, grooming, rearing, or upright posture) were assessed. Following 10 days of behavioral trials, brains were removed and dissected into specific regions including the cerebellum, frontal cortex, hippocampus, midbrain, pons, and striatum. Gene expression analysis was performed using real-time quantitative polymerase-chain reaction (qPCR) for catechol-O-methyltransferase (COMT) and tyrosine hydroxylase (TH). Compared to naive control mice, significant up regulation of COMT expression of residents was observed in the cerebellum, frontal cortex, hippocampus, midbrain, and striatum; in all of these brain regions the COMT expression of residents was also significantly higher than that of intruders. The intruders also had a significant down regulation (compared to naive control mice) within the hippocampus, indicating a selective decrease in COMT expression in the hippocampus of submissive subjects. Immunoblot analysis confirmed COMT up regulation in the midbrain and hippocampus of residents and down regulation in intruders. qPCR analysis of TH expression indicated significant up regulation in the midbrain of residents and concomitant down regulation in intruders. These findings implicate regionally- and behaviorally-specific regulation of COMT and TH expression in aggressive and submissive behaviors. Additional molecular and cellular characterization of COMT, TH, and other potential targets is warranted within this animal model of aggression
PMCID:3199365
PMID: 21512897
ISSN: 1863-2661
CID: 137055

Upregulation of select rab GTPases in cholinergic basal forebrain neurons in mild cognitive impairment and Alzheimer's disease

Ginsberg, Stephen D; Mufson, Elliott J; Alldred, Melissa J; Counts, Scott E; Wuu, Joanne; Nixon, Ralph A; Che, Shaoli
Endocytic system dysfunction is one of the earliest disturbances that occur in Alzheimer's disease (AD), and may underlie the selective vulnerability of cholinergic basal forebrain (CBF) neurons during the progression of dementia. Herein we report that genes regulating early and late endosomes are selectively upregulated within CBF neurons in mild cognitive impairment (MCI) and AD. Specifically, upregulation of rab4, rab5, rab7, and rab27 was observed in CBF neurons microdissected from postmortem brains of individuals with MCI and AD compared to age-matched control subjects with no cognitive impairment (NCI). Upregulated expression of rab4, rab5, rab7, and rab27 correlated with antemortem measures of cognitive decline in individuals with MCI and AD. qPCR validated upregulation of these select rab GTPases within microdissected samples of the basal forebrain. Moreover, quantitative immunoblot analysis demonstrated upregulation of rab5 protein expression in the basal forebrain of subjects with MCI and AD. The elevation of rab4, rab5, and rab7 expression is consistent with our recent observations in CA1 pyramidal neurons in MCI and AD. These findings provide further support that endosomal pathology accelerates endocytosis and endosome recycling, which may promote aberrant endosomal signaling and neurodegeneration throughout the progression of AD
PMCID:3163754
PMID: 21669283
ISSN: 1873-6300
CID: 136996

Gender differences in neurotrophin and glutamate receptor expression in cholinergic nucleus basalis neurons during the progression of Alzheimer's disease

Counts, Scott E; Che, Shaoli; Ginsberg, Stephen D; Mufson, Elliott J
The higher incidence rate of Alzheimer's disease (AD) in elderly women indicates that gender plays a role in AD pathogenesis. Evidence from clinical and pharmacologic studies, neuropathological examinations, and models of hormone replacement therapy suggest that cholinergic basal forebrain (CBF) cortical projection neurons within the nucleus basalis (NB), which mediate memory and attention and degenerate in AD, may be preferentially vulnerable in elderly women compared to men. CBF neurons depend on nerve growth factor (NGF) and their cognate receptors (trkA and p75(NTR)) for their survival and maintenance. We recently demonstrated a shift in the balance of NGF and its receptors toward cell death mechanisms during the progression of AD. To address whether gender affects NGF signaling system expression within the CBF, we used single cell RNA amplification and custom microarray technologies to compare gene expression profiles of single cholinergic NB neurons in tissue specimens from male and female members of the Religious Orders Study who died with a clinical diagnosis of no cognitive impairment (NCI), mild cognitive impairment (MCI), or mild/moderate AD. p75(NTR) expression within male cholinergic NB neurons was unchanged across clinical diagnosis, whereas p75(NTR) mRNA levels in female NB neurons exhibited a approximately 40% reduction in AD compared to NCI. Male AD subjects displayed a approximately 45% reduction in trkA mRNA levels within NB neurons compared to NCI and MCI. In contrast, NB neuronal trkA expression in females was reduced approximately 50% in both MCI and AD compared to NCI. Reduced trkA mRNA levels were associated with poorer global cognitive performance and higher Braak scores in the female subjects. In addition, we found a female-selective reduction in GluR2 AMPA glutamate receptor subunit expression in NB neurons in AD. These data suggest that cholinergic NB neurons in females may be at greater risk for degeneration during the progression of AD and support the concept of gender-specific therapeutic interventions during the preclinical stages of the disease.
PMCID:3155625
PMID: 21397006
ISSN: 0891-0618
CID: 165458

Hippocampal neurotrophic signaling and endosomal-lysosomal pathway dysfunction in mild cognitive impairment [Meeting Abstract]

Mufson, E; Ginsberg, S
Background: Although the hippocampus is selectively vulnerable to neurodegeneration during the early stages of Alzheimer's disease (AD), the molecular and cellular mechanisms underlying this dysfunction are poorly understood. Nerve growth factor, itscognate receptors and downstreamevents aswell as endosomal- lysosomal systemimpairmentmayunderlie hippocampal dysfunction during the progression of AD.Methods: To explore the role of thesemolecular factors in hippocampal degeneration during the progression of AD we performed single population gene expression array analysis and quantitative immunoblotting on tissues obtained from subjects who died with an antemortem clinical diagnosis of nocognitive impairment (NCI), mild cognitive impairment (MCI), or AD. Expression profiling observations were validated with real-time qPCR and immunocytochemistry. Results: In the present investigation, we found an increase in hippocampal protein levels of proNGF (p = 0.027) and to a lesser extent phopho-JNK (Ser 473, p = 0.066) in AD compared to NCI andMCI. Hippocampal p75NTR remained stable across the three clinical groups while TrkA levels were reduced w60% in MCI compared to NCI orAD. No differences were found in sortilin, NRH2, phospho-AKT, phospho- ERK1/2 orAKT, ERK1/2 and JNK in the hippocampus across groups. ProNGF levels were positively correlated with phospho-JNK and to a lesser extent to phospho-AKT, suggesting activation of downstream cell survival and stress activation signals. Increased proNGF and phospho-JNK levels were associated with lower MMSE scores but not Braak neuropathology. Phospho-AKT and phosphor-ERK1/2levels were not associated with MMSE or Braak stage. On the other hand, single cell expression profiling of hippocampal CA1 neurons indicate a significant upregulation of early endosome effectors rab4 (AD>MCI&NCI) and rab5 (AD>MCI>NCI), late endosome constituent rab7 (AD &MCI > NCI), and the trafficking molecule rab24 (AD > MCI & NCI). Down regulation of thesynaptic-related marker r!
EMBASE:70502670
ISSN: 1552-5260
CID: 460982

A genotype resource for postmortem brain samples from the Autism Tissue Program

Wintle, Richard F; Lionel, Anath C; Hu, Pingzhao; Ginsberg, Stephen D; Pinto, Dalila; Thiruvahindrapduram, Bhooma; Wei, John; Marshall, Christian R; Pickett, Jane; Cook, Edwin H; Scherer, Stephen W
The Autism Tissue Program (ATP), a science program of Autism Speaks, provides researchers with access to well-characterized postmortem brain tissues. Researchers access these tissues through a peer-reviewed, project-based approval process, and obtain related clinical information from a secure, online informatics portal. However, few of these samples have DNA banked from other sources (such as a blood sample from the same individual), hindering genotype-phenotype correlation and interpretation of gene expression data derived from the banked brain tissue. Here, we describe an initiative to extract DNA from Brodmann Area 19, and genotype these samples using both the Affymetrix Genome-Wide Human SNP Array 6.0 and the Illumina Human1M-Duo DNA Analysis BeadChip genome-wide microarray technologies. We additionally verify reported gender, and infer ethnic background from the single nucleotide polymorphism data. We have also used a rigorous, multiple algorithm approach to identify genomic copy number variation (CNV) from these array data. Following an initial proof of principle study using two samples, 52 experimental samples, consisting of 27 subjects with confirmed or suspected autism and related disorders, 5 subjects with cytogenetically visible duplications of 15q, 2 with epilepsy and 18 age-matched normal controls were processed, yielding high-quality genotype data in all cases. The genotype and CNV data are provided via the ATP informatics portal as a resource for the autism research community
PMCID:4605268
PMID: 21254448
ISSN: 1939-3806
CID: 134278

Vacuolar pathology in the median eminence of the hypothalamus after hyponatremia

Levine, Seymour; Saltzman, Arthur; Ginsberg, Stephen D
The median eminence of the hypothalamus is an important conduit by which neurosecretory hormones from hypothalamic nuclei are delivered to the pars nervosa (neural lobe) of the pituitary en route tothe bloodstream. Dilutional hyponatremia was produced in adult ratsto determine the effect on the morphology of the median eminence of the hypothalamus. Hyponatremia was caused by reducing electrolyte and organic osmolyte reserves to block the excretion of water through delivery of the nephrotoxin mercuric chloride (HgCl2). Histological examination of the brain 1 day after a hyponatremic insult revealed vacuolation within the median eminence of the hypothalamus. No other lesions were found in other parts of the brain after hyponatremia. The hyponatremic lesion consisted of a band of closely packed vacuoles that crossed the floor of the third ventricle. Vacuoles associated with hyponatremia were predominantly in the subependymal, fiber, reticular, and palisade layers of the median eminence. Vacuolation was not observed in the tanycyte layer of the median eminence. This study indicates that the median eminence is a potentially vulnerable site in human hyponatremic conditions that should be evaluated further in relevant animal models
PMCID:3074179
PMID: 21343884
ISSN: 0022-3069
CID: 124107

Microarray analysis of CA1 pyramidal neurons in the hTau mouse model of tauopathy reveals progressive synaptic degeneration [Meeting Abstract]

Alldred, M. J.; Duff, K. E.; Ginsberg, S. D.
BIOSIS:PREV201200102641
ISSN: 1558-3635
CID: 459282

Perinatal choline supplementation improves learning of an attention task and alters basal forebrain cholinergic neurons in the Ts65Dn mouse model of Down syndrome [Meeting Abstract]

Powers, B. E.; Kelley, C. M.; Ash, J. A.; Valazquez, R.; Strawderman, M.; Mufson, E. J.; Ginsberg, S. D.; Strupp, B. J.
BIOSIS:PREV201200081012
ISSN: 1558-3635
CID: 459132