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An algorithm to improve diagnostic accuracy in diabetes in computerised problem orientated medical records (POMR) compared with an established algorithm developed in episode orientated records (EOMR)
De Lusignan, Simon; Liaw, Siaw-Teng; Dedman, Daniel; Khunti, Kamlesh; Sadek, Khaled; Jones, Simon
BACKGROUND: An algorithm that detects errors in diagnosis, classification or coding of diabetes in primary care computerised medial record (CMR) systems is currently available. However, this was developed on CMR systems that are episode orientated medical records (EOMR); and do not force the user to always code a problem or link data to an existing one. More strictly problem orientated medical record (POMR) systems mandate recording a problem and linking consultation data to them. OBJECTIVE: To compare the rates of detection of diagnostic accuracy using an algorithm developed in EOMR with a new POMR specific algorithm. METHOD: We used data from The Health Improvement Network (THIN) database (N = 2,466,364) to identify a population of 100,513 (4.08%) patients considered likely to have diabetes. We recalibrated algorithms designed to classify cases of diabetes to take account of that POMR enforced coding consistency in the computerised medical record systems [In Practice Systems (InPS) Vision] that contribute data to THIN. We explored the different proportions of people classified as having type 1 diabetes mellitus (T1DM) or type 2 diabetes mellitus (T2DM) and with diabetes unclassifiable as either T1DM or T2DM. We compared proportions using chi-square tests and used Tukey's test to compare the characteristics of the people in each group. RESULTS: The prevalence of T1DM using the original EOMR algorithm was 0.38% (9,264/2,466,364), and for T2DM 3.22% (79,417/2,466,364). The prevalence using the new POMR algorithm was 0.31% (7,750/2,466,364) T1DM and 3.65% (89,990/2,466,364) T2DM. The EOMR algorithms also left more people unclassified 11,439 (12%), as to their type of diabetes compared with 2,380 (2.4%), for the new algorithm. Those people who were only classified by the EOMR system differed in terms of older age, and apparently better glycaemic control, despite not being prescribed medication for their diabetes (p < 0.005). CONCLUSION: Increasing the degree of problem orientation of the medical record system can improve the accuracy of recording of diagnoses and, therefore, the accuracy of using routinely collected data from CMRs to determine the prevalence of diabetes mellitus; data processing strategies should reflect the degree of problem orientation.
PMID: 26245239
ISSN: 2058-4563
CID: 1731742
an valid and practical risk-prediction or casemix adjustment models, including adjustment for comorbidity, be generated from English hospital administrative data (Hospital Episode Statistics)? A national observational study
Bottle, Alex; Gaudoin, Rene; Goudie, Rosalind; Jones, Simon; Aylin, Paul
BACKGROUND:NHS hospitals collect a wealth of administrative data covering accident and emergency (A&E) department attendances, inpatient and day case activity, and outpatient appointments. Such data are increasingly being used to compare units and services, but adjusting for risk is difficult. OBJECTIVES:To derive robust risk-adjustment models for various patient groups, including those admitted for heart failure (HF), acute myocardial infarction, colorectal and orthopaedic surgery, and outcomes adjusting for available patient factors such as comorbidity, using England’s Hospital Episode Statistics (HES) data. To assess if more sophisticated statistical methods based on machine learning such as artificial neural networks (ANNs) outperform traditional logistic regression (LR) for risk prediction. To update and assess for the NHS the Charlson index for comorbidity. To assess the usefulness of outpatient data for these models. MAIN OUTCOME MEASURES:Mortality, readmission, return to theatre, outpatient non-attendance. For HF patients we considered various readmission measures such as diagnosis-specific and total within a year. METHODS:We systematically reviewed studies comparing two or more comorbidity indices. Logistic regression, ANNs, support vector machines and random forests were compared for mortality and readmission. Models were assessed using discrimination and calibration statistics. Competing risks proportional hazards regression and various count models were used for future admissions and bed-days. RESULTS: = 0.73 for death following stroke. Calibration was often good for procedure groups but poorer for diagnosis groups, with overprediction of low risk a common cause. The machine learning methods we investigated offered little beyond LR for their greater complexity and implementation difficulties. For HF, some patient-level predictors differed by primary diagnosis of readmission but not by length of follow-up. Prior non-attendance at outpatient appointments was a useful, strong predictor of readmission. Hospital-level readmission rates for HF did not correlate with readmission rates for non-HF; hospital performance on national audit process measures largely correlated only with HF readmission rates. CONCLUSIONS:Many practical risk-prediction or casemix adjustment models can be generated from HES data using LR, though an extra step is often required for accurate calibration. Including outpatient data in readmission models is useful. The three machine learning methods we assessed added little with these data. Readmission rates for HF patients should be divided by diagnosis on readmission when used for quality improvement. FUTURE WORK:As HES data continue to develop and improve in scope and accuracy, they can be used more, for instance A&E records. The return to theatre metric appears promising and could be extended to other index procedures and specialties. While our data did not warrant the testing of a larger number of machine learning methods, databases augmented with physiological and pathology information, for example, might benefit from methods such as boosted trees. Finally, one could apply the HF readmissions analysis to other chronic conditions. FUNDING:The National Institute for Health Research Health Services and Delivery Research programme.
PMID: 25642500
ISSN: 2050-4357
CID: 2979402
The UK vs Sweden : is the NHS really so bad?
Lazaridis, Emmanuel N; Gavalova, Lucia; Jones, Simon; Quinn, Tom; Weston, Clive
Sheng-Chia Chung and colleagues report in The Lancet (23 January 2014) an international comparison of cardiovascular patient mortality between the UK and Sweden. They suggest that "more than 10000 deaths at 30 days would have been prevented or delayed had UK patients experienced the care of their Swedish counterparts." Further, they estimate that 1741 deaths would have been prevented in the UK had the Swedish pattern of primary percutaneous coronary intervention (PCI) and beta-blocker use been replicated in the NHS from 2004 to 2010. However, their study does not provide convincing evidence that faster uptake of primary PCI or beta-blockers on discharge would have had an effect on cardiovascular patient mortality in the UK.
ORIGINAL:0009819
ISSN: 2167-9843
CID: 1746512
The Incidence of Infective Endocarditis in England is Increasing-An Assessment of the Impact of Cessation of Antibiotic Prophylaxis Using Population Statistics [Meeting Abstract]
Dayer, Mark J; Jones, Simon; Prendergast, Bernard; Baddour, Larry M; Lockhart, Peter B; Thornhill, Martin H
ISI:000346033700031
ISSN: 1524-4539
CID: 1732702
Combining specialist and generalist training could improve GP recruitment
Munro, Neil; Bewick, Mike; Jones, Simon; de Lusignan, Simon
ORIGINAL:0009803
ISSN: n/a
CID: 1732742
The Cost-Effectiveness of Midwifery Staffing and Skill Mix on Maternity Outcomes: A Report for The National Institute for Health and Care Excellence
Cookson, Graham; Jones, Simon; van Vlymen, Jeremy; Laliotis, Ioannis
[S.l.] : University of Surrey, 2014
Extent: 97 p. ; 28cm
ISBN:
CID: 1732802
Sentinel lymph node metastasis burden in breast cancer patients predicts risk of further axillary metastases following analysis using one-step nucleic acid amplification: A prospective cohort study
Milner, Thomas; de Lusignan, Simon; Jones, Simon; Jackson, Peter; Layer, Graham; Kissin, Mark; Irvine, Tracey
In breast cancer patients undergoing sentinel lymph node biopsy (SLNB) analysis using one-step nucleic acid amplification (OSNA), clarity is required as to the determinants of further metastasis risk upon completion axillary lymph node dissection (ALND). This study aims to identify whether the proportion of sentinel nodes containing metastases predicts risk of further axillary disease.
ORIGINAL:0009807
ISSN: 0748-7983
CID: 1732812
Association of continuous subcutaneous insulin infusion (CSII) during pregnancy with pregnancy related outcome and its relationship with microvascular complications [Meeting Abstract]
Ahmed, MS; Tahrani, A; Ateeq, S; Jones, S; Buckley, H; Dyer, P; Field, A; Hand, J; Karamat, M
ISI:000333445900404
ISSN: 1464-5491
CID: 1732032
People with common mental health problems and diabetes receive better surveillance of diabetes related conditions and equal surveillance of their diabetes in primary care [Meeting Abstract]
McGovern, AP; Munro, N; Chan, T; Jones, S; De Lusignan, S
ISI:000333445900462
ISSN: 1464-5491
CID: 1732042
Falls in the elderly were predicted opportunistically using a decision tree and systematically using a database-driven screening tool
Rafiq, Meena; McGovern, Andrew; Jones, Simon; Harris, Kevin; Tomson, Charles; Gallagher, Hugh; de Lusignan, Simon
OBJECTIVE: To identify risk factors for falls and generate two screening tools: an opportunistic tool for use in consultation to flag at risk patients and a systematic database screening tool for comprehensive falls assessment of the practice population. STUDY DESIGN AND SETTING: This multicenter cohort study was part of the quality improvement in chronic kidney disease trial. Routine data for participants aged 65 years and above were collected from 127 general practice (GP) databases across the UK, including sociodemographic, physical, diagnostic, pharmaceutical, lifestyle factors, and records of falls or fractures over 5 years. Multilevel logistic regression analyses were performed to identify predictors. The strongest predictors were used to generate a decision tree and risk score. RESULTS: Of the 135,433 individuals included, 10,766 (8%) experienced a fall or fracture during follow-up. Age, female sex, previous fall, nocturia, anti-depressant use, and urinary incontinence were the strongest predictors from our risk profile (area under the receiver operating characteristics curve = 0.72). Medication for hypertension did not increase the falls risk. Females aged over 75 years and subjects with a previous fall were the highest risk groups from the decision tree. The risk profile was converted into a risk score (range -7 to 56). Using a cut-off of >/=9, sensitivity was 68%, and specificity was 60%. CONCLUSION: Our study developed opportunistic and systematic tools to predict falls without additional mobility assessments.
PMID: 24786593
ISSN: 1878-5921
CID: 1731602