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Rapid and accurate T mapping from multi-spin-echo data using Bloch-simulation-based reconstruction
Ben-Eliezer, Noam; Sodickson, Daniel K; Block, Kai Tobias
PURPOSE: Quantitative T2 -relaxation-based contrast has the potential to provide valuable clinical information. Practical T2 -mapping, however, is impaired either by prohibitively long acquisition times or by contamination of fast multiecho protocols by stimulated and indirect echoes. This work presents a novel postprocessing approach aiming to overcome the common penalties associated with multiecho protocols, and enabling rapid and accurate mapping of T2 relaxation values. METHODS: Bloch simulations are used to estimate the actual echo-modulation curve (EMC) in a multi-spin-echo experiment. Simulations are repeated for a range of T2 values and transmit field scales, yielding a database of simulated EMCs, which is then used to identify the T2 value whose EMC most closely matches the experimentally measured data at each voxel. RESULTS: T2 maps of both phantom and in vivo scans were successfully reconstructed, closely matching maps produced from single spin-echo data. Results were consistent over the physiological range of T2 values and across different experimental settings. CONCLUSION: The proposed technique allows accurate T2 mapping in clinically feasible scan times, free of user- and scanner-dependent variations, while providing a comprehensive framework that can be extended to model other parameters (e.g., T1 , B1 + , B0 , diffusion) and support arbitrary acquisition schemes. Magn Reson Med, 2014. (c) 2014 Wiley Periodicals, Inc.
PMCID:4169365
PMID: 24648387
ISSN: 0740-3194
CID: 904092
The rapid imaging renaissance: sparser samples, denser dimensions, and glimmerings of a grand unified tomography [Meeting Abstract]
Sodickson, Daniel K; Feng, Li; Knoll, Florian; Cloos, Martijn; Ben-Eliezer, Noam; Axel, Leon; Chandarana, Hersh; Block, Tobias; Otazo, Ricardo
The task of imaging is to gather spatiotemporal information which can be organized into a coherent map. Tomographic imaging in particular involves the use of multiple projections, or other interactions of a probe (light, sound, etc.) with a body, in order to determine cross-sectional information. Though the probes and the corresponding imaging modalities may vary, and though the methodology of particular imaging approaches is in constant ferment, the conceptual underpinnings of tomographic imaging have in many ways remained fixed for many decades. Recent advances in applied mathematics, however, have begun to roil this intellectual landscape. The advent of compressed sensing, anticipated in various algorithms dating back many years but unleashed in full theoretical force in the last decade, has changed the way imagers have begun to think about data acquisition and image reconstruction. The power of incoherent sampling and sparsity-enforcing reconstruction has been demonstrated in various contexts and, when combined with other modern fast imaging techniques, has enabled unprecedented increases in imaging efficiency. Perhaps more importantly, however, such approaches have spurred a shift in perspective, prompting us to focus less on nominal data sufficiency than on information content. Beginning with examples from MRI, then proceeding through selected other modalities such as CT and PET, as well as multimodality combinations, this paper explores the potential of newly evolving acquisition and reconstruction paradigms to change the way we do imaging in the lab and in the clinic.
ISI:000355665600014
ISSN: 0277-786x
CID: 2061802
Effect of an annular sleeve of high permittivity material on resonant modes and homogeneity of a
Vaidya, M.V.; Chen, G.; Zhang, B.; Collins, C.M.; Sodickson, D.K.; Lattanzi, R.
We investigated how high permittivity materials affect the S-parameters and transmit
INSPEC:15309516
ISSN: 1945-7928
CID: 1749652
Rapid free-breathing dynamic contrast-enhanced MRI using motion-resolved compressed
Li Feng; Sodickson, D.K.; Otazo, R.
Compressed sensing is a powerful rapid imaging approach for Magnetic Resonance Imaging
INSPEC:15309544
ISSN: 1945-7928
CID: 1749622
Magnetic resonance fingerprint compression [Meeting Abstract]
Cloos, Marijin; Zhao, T; Knoll, Florian; Alon, L; Lattanzi, R; Sodickson, Daniel K
ORIGINAL:0014695
ISSN: 1524-6965
CID: 4534412
Simultaneous PET-MRI reconstruction with vectorial second order total generalized variation [Meeting Abstract]
Knoll, Florian; Holler, Martin; Koesters, Thomas; Bredies, Kristian; Sodickson, Daniel K.
ISI:000413680600291
ISSN: 1095-7863
CID: 4533892
PET-MRF: One-step 6-minute multi-parametric PET-MR imaging using MR fingerprinting and multi-modality joint image reconstruction [Meeting Abstract]
Knoll, Florian; Cloos, Martijin; Koesters, Thomas; Zenge, Michael; Otazo, Ricardo; Sodickson, Daniel K
Purpose: Despite the extensive opportunities offered by current state-of-the-art PET-MR systems [1], their use is still far from routine clinical practice. While it is feasible to acquire PET data from a single bed position in about 5 minutes, collecting the clinically relevant variety of traditional MR contrasts requires substantially more time. This bottleneck formed by the traditional MR paradigm leads to a relatively inefficient use of the PET component and is particularly prohibitive for multiplebed-position PET protocols. This work proposes a one-step procedure that merges the MR fingerprinting (MRF) framework [2] with the PET acquisition, and employs a dedicated multi-modality reconstruction exploiting joint information among multiple contrast weightings to enable a 6 minute comprehensive PET-MR exam, which can provide the majority of clinical MR contrasts alongside quantitative parametric maps of the relaxation parameters (T1, T2) together with improved PET images. Theory & Methods: Although MRF is inherently robust against incoherent undersampling artifacts, there is a limit beyond which the final image quality will suffer. Instead of relaying purely on incoherence between undersampling artifacts and simulated signal evolutions (standard MRF reconstruction), we propose an extension of a recently proposed nonlinear joint multimodality reconstruction [3] to simultaneously reconstruct the series of MRF images and the PET image by enforcing joint sparsity, thereby reducing residual undersampling artifacts in MR while at the same time improving PET reconstruction quality. The joint MRF-PET reconstruction is performed by minimizing the …
ORIGINAL:0014704
ISSN: 1524-6965
CID: 4534542
Precuneal and amygdala spontaneous activity and functional connectivity in war-zone-related PTSD
Yan, Xiaodan; Lazar, Mariana; Shalev, Arieh Y; Neylan, Thomas C; Wolkowitz, Owen M; Brown, Adam D; Henn-Haase, Clare; Yehuda, Rachel; Flory, Janine D; Abu-Amara, Duna; Sodickson, Daniel K; Marmar, Charles R
Abnormality in the "fear circuitry" has been known as a major neural characteristic of posttraumatic stress disorder (PTSD). Recent studies also revealed decreased functional connectivity in the default mode network in PTSD. The present study aims to investigate, in war-zone-related PTSD, the spontaneous activity and functional connectivity of the amygdala and the precuneus, which are two representative brain regions of the two networks, respectively. Two groups of 52 male US Operation Iraqi Freedom (OIF) and Operation Enduring Freedom (OEF) veterans (PTSD vs. controls), well matched on age and ethnicity, were clinically assessed and then studied in a resting state functional magnetic resonance imaging (fMRI) procedure. Functional connectivity analysis was conducted on the resting state fMRI data with the amygdala and precuneus as seeds. Compared with controls, veterans with PTSD had lower functional connectivity in the default mode network, as well as lower amygdala-frontal functional connectivity. Both the PTSD and the control group had a significant positive precuneal-amygdala functional connectivity without a significant group difference. The magnitudes of spontaneous activity of the amygdala and the precuneus were negatively correlated in the PTSD group and showed significant quadratic relationships with the amount of emotional abuse in early life trauma. These findings may improve our understanding about the relationships between fear circuitry and the default mode network in the context of war-zone-related PTSD.
PMID: 25561375
ISSN: 0165-1781
CID: 1428912
Characterization of a dielectric phantom for high-field magnetic resonance imaging applications
Duan, Qi; Duyn, Jeff H; Gudino, Natalia; de Zwart, Jacco A; van Gelderen, Peter; Sodickson, Daniel K; Brown, Ryan
PURPOSE: In this work, a generic recipe for an inexpensive and nontoxic phantom was developed within a range of biologically relevant dielectric properties from 150 MHz to 4.5 GHz. METHODS: The recipe includes deionized water as the solvent, NaCl to primarily control conductivity, sucrose to primarily control permittivity, agar-agar to gel the solution and reduce heat diffusivity, and benzoic acid to preserve the gel. Two hundred and seventeen samples were prepared to cover the feasible range of NaCl and sucrose concentrations. Their dielectric properties were measured using a commercial dielectric probe and were fitted to a 3D polynomial to generate a recipe describing the properties as a function of NaCl concentration, sucrose concentration, and frequency. RESULTS: Results indicated that the intuitive linear and independent relationships between NaCl and conductivity and between sucrose and permittivity are not valid. A generic polynomial recipe was developed to characterize the complex relationship between the solutes and the resulting dielectric values and has been made publicly available as a web application. In representative mixtures developed to mimic brain and muscle tissue, less than 2% difference was observed between the predicted and measured conductivity and permittivity values. CONCLUSIONS: It is expected that the recipe will be useful for generating dielectric phantoms for general magnetic resonance imaging (MRI) coil development at high magnetic field strength, including coil safety evaluation as well as pulse sequence evaluation (including B1 (+) mapping, B1 (+) shimming, and selective excitation pulse design), and other non-MRI applications which require biologically equivalent dielectric properties.
PMCID:4281072
PMID: 25281973
ISSN: 0094-2405
CID: 1299002
Golden-angle radial sparse parallel MRI: Combination of compressed sensing, parallel imaging, and golden-angle radial sampling for fast and flexible dynamic volumetric MRI
Feng, Li; Grimm, Robert; Tobias Block, Kai; Chandarana, Hersh; Kim, Sungheon; Xu, Jian; Axel, Leon; Sodickson, Daniel K; Otazo, Ricardo
PURPOSE: To develop a fast and flexible free-breathing dynamic volumetric MRI technique, iterative Golden-angle RAdial Sparse Parallel MRI (iGRASP), that combines compressed sensing, parallel imaging, and golden-angle radial sampling. METHODS: Radial k-space data are acquired continuously using the golden-angle scheme and sorted into time series by grouping an arbitrary number of consecutive spokes into temporal frames. An iterative reconstruction procedure is then performed on the undersampled time series where joint multicoil sparsity is enforced by applying a total-variation constraint along the temporal dimension. Required coil-sensitivity profiles are obtained from the time-averaged data. RESULTS: iGRASP achieved higher acceleration capability than either parallel imaging or coil-by-coil compressed sensing alone. It enabled dynamic volumetric imaging with high spatial and temporal resolution for various clinical applications, including free-breathing dynamic contrast-enhanced imaging in the abdomen of both adult and pediatric patients, and in the breast and neck of adult patients. CONCLUSION: The high performance and flexibility provided by iGRASP can improve clinical studies that require robustness to motion and simultaneous high spatial and temporal resolution. Magn Reson Med, 2013. (c) 2013 Wiley Periodicals, Inc.
PMCID:3991777
PMID: 24142845
ISSN: 0740-3194
CID: 817022