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Utility of single nucleotide polymorphisms in prostate biopsy decisions

Loeb, Stacy; Braithwaite, R Scott; Hayes, Richard B
PMCID:3602735
PMID: 23526876
ISSN: 1523-6161
CID: 250392

Serum alpha-tocopherol and gamma-tocopherol concentrations and prostate cancer risk in the PLCO Screening Trial: a nested case-control study

Weinstein, Stephanie J; Peters, Ulrike; Ahn, Jiyoung; Friesen, Marlin D; Riboli, Elio; Hayes, Richard B; Albanes, Demetrius
BACKGROUND: Vitamin E compounds exhibit prostate cancer preventive properties experimentally, but serologic investigations of tocopherols, and randomized controlled trials of supplementation in particular, have been inconsistent. Many studies suggest protective effects among smokers and for aggressive prostate cancer, however. METHODS: We conducted a nested case-control study of serum alpha-tocopherol and gamma-tocopherol and prostate cancer risk in the Prostate, Lung, Colorectal and Ovarian Cancer Screening Trial, with 680 prostate cancer cases and 824 frequency-matched controls. Multivariate-adjusted, conditional logistic regression models were used to estimate odds ratios (OR) and 95% confidence intervals (CIs) for tocopherol quintiles. RESULTS: Serum alpha-tocopherol and gamma-tocopherol were inversely correlated (r = -0.24, p<0.0001). Higher serum alpha-tocopherol was associated with significantly lower prostate cancer risk (OR for the highest vs. lowest quintile = 0.63, 95% CI 0.44-0.92, p-trend 0.05). By contrast, risk was non-significantly elevated among men with higher gamma-tocopherol concentrations (OR for the highest vs. lowest quintile = 1.35, 95% CI 0.92-1.97, p-trend 0.41). The inverse association between prostate cancer and alpha-tocopherol was restricted to current and recently former smokers, but was only slightly stronger for aggressive disease. By contrast, the increased risk for higher gamma-tocopherol was more pronounced for less aggressive cancers. CONCLUSIONS: Our findings indicate higher alpha-tocopherol status is associated with decreased risk of developing prostate cancer, particularly among smokers. Although two recent controlled trials did not substantiate an earlier finding of lower prostate cancer incidence and mortality in response to supplementation with a relatively low dose of alpha-tocopherol, higher alpha-tocopherol status may be beneficial with respect to prostate cancer risk among smokers. Determining what stage of prostate cancer development is impacted by vitamin E, the underlying mechanisms, and how smoking modifies the association, is needed for a more complete understanding of the vitamin E-prostate cancer relation.
PMCID:3390343
PMID: 22792240
ISSN: 1932-6203
CID: 231072

Leukemia-related chromosomal loss detected in hematopoietic progenitor cells of benzene-exposed workers

Zhang, L; Lan, Q; Ji, Z; Li, G; Shen, M; Vermeulen, R; Guo, W; Hubbard, A E; McHale, C M; Rappaport, S M; Hayes, R B; Linet, M S; Yin, S; Smith, M T; Rothman, N
Benzene exposure causes acute myeloid leukemia and hematotoxicity, shown as suppression of mature blood and myeloid progenitor cell numbers. As the leukemia-related aneuploidies monosomy 7 and trisomy 8 previously had been detected in the mature peripheral blood cells of exposed workers, we hypothesized that benzene could cause leukemia through the induction of these aneuploidies in hematopoietic stem and progenitor cells. We measured loss and gain of chromosomes 7 and 8 by fluorescence in situ hybridization in interphase colony-forming unit-granulocyte-macrophage (CFU-GM) cells cultured from otherwise healthy benzene-exposed (n=28) and unexposed (n=14) workers. CFU-GM monosomy 7 and 8 levels (but not trisomy) were significantly increased in subjects exposed to benzene overall, compared with levels in the control subjects (P=0.0055 and P=0.0034, respectively). Levels of monosomy 7 and 8 were significantly increased in subjects exposed to <10 p.p.m. (20%, P=0.0419 and 28%, P=0.0056, respectively) and >/=10 p.p.m. (48%, P=0.0045 and 32%, 0.0354) benzene, compared with controls, and significant exposure-response trends were detected (P(trend)=0.0033 and 0.0057). These data show that monosomies 7 and 8 are produced in a dose-dependent manner in the blood progenitor cells of workers exposed to benzene, and may be mechanistically relevant biomarkers of early effect for benzene and other leukemogens.
PMCID:3472034
PMID: 22643707
ISSN: 0887-6924
CID: 209712

Prospective study of genomic hypomethylation of leukocyte DNA and colorectal cancer risk

Huang, Wen-Yi; Su, L Joseph; Hayes, Richard B; Moore, Lee E; Katki, Hormuzd A; Berndt, Sonja I; Weissfeld, Joel L; Yegnasubramanian, Srinivasan; Purdue, Mark P
BACKGROUND: Systematic genome-wide reductions of methylated cytosine (5-mC) levels have been observed in colorectal cancer tissue and are suspected to play a role in carcinogenesis, possibly as a consequence of inadequate folate intake. Reduced 5-mC levels in peripheral blood leukocytes have been associated with increased risk of colorectal cancer and adenoma in cross-sectional studies. METHODS: To minimize disease- and/or treatment-related effects, we studied leukocyte 5-mC levels in prospectively collected blood specimens of 370 cases and 493 controls who were cancer-free at blood collection from the Prostate, Lung, Colorectal, and Ovarian (PLCO) Cancer Screening Trial. Leukocyte 5-mC level was determined by a high-pressure liquid chromatography (HPLC)/tandem mass spectrometry method and expressed as the relative amount of methyl to total cytosine residues, or %5-mC. We estimated the association between colorectal cancer risk and %5-mC categories by computing ORs and 95% confidence intervals (CI) through logistic regression modeling. RESULTS: We observed no dose-dependent association between colorectal cancer and%5-mC categories (lowest vs. highest tertile: OR, 1.14; 95% CI, 0.80-1.63; P(trend) = 0.51). However, among subjects whose 5-mC levels were at the highest tertile, we observed an inverse association between natural folate intake and colorectal cancer (highest tertile of natural folate vs. lowest: OR, 0.35; 95% CI, 0.17-0.71; P(trend) = 0.003; P(interaction) = 0.003). CONCLUSIONS: This prospective investigation show no clear association between leukocyte 5-mC level and subsequent colorectal cancer risk but a suggestive risk modification between 5-mC level and natural folate intake. Impact: Adequate folate status may protect against colorectal carcinogenesis through mechanisms involving adequate DNA methylation in the genome. Cancer Epidemiol Biomarkers Prev; 21(11); 2014-21. (c)2012 AACR.
PMCID:3493855
PMID: 23001241
ISSN: 1055-9965
CID: 185482

Polygenes and Estimated Heritability of Prostate Cancer in an African American Sample Using GWAS Data [Meeting Abstract]

He, Jing; Chen, Gary K.; Blot, William J.; Strom, Sara S.; Berndt, Sonja I.; Kitties, Rick A.; Rybicki, Benjamin A.; Isaacs, William; Ingles, Sue A.; Stanford, Janet L.; Diver, Ryan W.; Witte, John S.; Hsing, Ann W.; Nemesure, Barbara; Rebbeck, Timothy R.; Cooney, Kathleen A.; Xu, Jianfeng; Kibel, Adam S.; Hu, Jennifer J.; John, Esther M.; Gueye, Serigne M.; Watya, Stephen; Signorello, Lisa B.; Hayes, Richard B.; Wang, Zhaoming; Chu, Lisa W.; Klein, Eric A.; Goodman, Phyllis; Yeboah, Edward; Tettey, Yao; Cai, Qiuyin; Kolb, Suzanne; Ostrander, Elaine A.; Zeigler-Johnson, Charnita; Yamamura, Yuko; Neslund-Dudas, Christine; Haslag-Minoff, Jennifer; Wu, William; Thomas, Venetta; Allen, Glenn O.; Murphy, Adam; Chang, Bao-Li; Zheng, Lilly S.; Leske, Cristina M.; Wu, Suh-Yuh; Ray, Anna M.; Hennis, Anselm J. M.; Thun, Michael J.; Carpten, John; Casey, Graham; Chanock, Stephen J.; Henderson, Brian E.; Haiman, Christopher A.; Stram, Daniel O.
ISI:000309913200064
ISSN: 0741-0395
CID: 183752

Models for Admixture Mapping in a Regression Framework [Meeting Abstract]

Liu, Jinghua; Chen, Gary K.; Blot, William J.; Strom, Sara S.; Berndt, Sonja I.; Kittles, Rick A.; Rybicki, Benjamin A.; Isaacs, William; Ingles, Sue A.; Stanford, Janet L.; Diver, W. Ryan; Witte, John S.; Hsing, Ann W.; Nemesure, Barbara; Rebbeck, Timothy R.; Cooney, Kathleen A.; Xu, Jianfeng; Kibel, Adam S.; Hu, Jennifer J.; John, Esther M.; Gueye, Serigne M.; Watya, Stephen; Signorello, Lisa B.; Hayes, Richard B.; Wang, Zhaoming; Chu, Lisa; Klein, Eric A.; Goodman, Phyllis; Yeboah, Edward; Tettey, Yao; Cai, Qiuyin; Kolb, Suzanne; Ostrander, Elaine A.; Zeigler-Johnson, Charnita; Yamamura, Yuko; Neslund-Dudas, Christine; Haslag-Minoff, Jennifer; Wu, William; Thomas, Venetta; Allen, Glenn O.; Murphy, Adma; Chang, Bao-Li; Zheng, S. Lilly; Leske, M. Cristina; Wu, Suh-Yuh; Ray, Anna M.; Hennis, Anselm J. M.; Thun, Michael J.; Carpten, John; Casey, Graham; Chanock, Stephen J.; Stram, Daniel O.; Henderson, Brian E.; Haiman, Christopher A.; Conti, David V.
ISI:000309913200032
ISSN: 0741-0395
CID: 183732

Vitamin or mineral supplement intake and the risk of head and neck cancer: pooled analysis in the INHANCE consortium

Li, Qian; Chuang, Shu-Chun; Eluf-Neto, Jose; Menezes, Ana; Matos, Elena; Koifman, Sergio; Wunsch-Filho, Victor; Fernandez, Leticia; Daudt, Alexander W; Curado, Maria Paula; Winn, Deborah M; Franceschi, Silvia; Herrero, Rolando; Castellsague, Xavier; Morgenstern, Hal; Zhang, Zuo-Feng; Lazarus, Philip; Muscat, Joshua; McClean, Michael; Kelsey, Karl T; Hayes, Richard B; Purdue, Mark P; Schwartz, Stephen M; Chen, Chu; Benhamou, Simone; Olshan, Andrew F; Yu, Guopei; Schantz, Stimson; Ferro, Gilles; Brennan, Paul; Boffetta, Paolo; Hashibe, Mia
To investigate the potential role of vitamin or mineral supplementation on the risk of head and neck cancer (HNC), we analyzed individual-level pooled data from 12 case-control studies (7,002 HNC cases and 8,383 controls) participating in the International Head and Neck Cancer Epidemiology consortium. There were a total of 2,028 oral cavity cancer, 2,465 pharyngeal cancer, 874 unspecified oral/pharynx cancer, 1,329 laryngeal cancer and 306 overlapping HNC cases. Odds ratios (OR) and 95% confidence intervals (CIs) for self reported ever use of any vitamins, multivitamins, vitamin A, vitamin C, vitamin E, and calcium, beta-carotene, iron, selenium and zinc supplements were assessed. We further examined frequency, duration and cumulative exposure of each vitamin or mineral when possible and stratified by smoking and drinking status. All ORs were adjusted for age, sex, race/ethnicity, study center, education level, pack-years of smoking, frequency of alcohol drinking and fruit/vegetable intake. A decreased risk of HNC was observed with ever use of vitamin C (OR = 0.76, 95% CI = 0.59-0.96) and with ever use of calcium supplement (OR = 0.64, 95% CI = 0.42-0.97). The inverse association with HNC risk was also observed for 10 or more years of vitamin C use (OR = 0.72, 95% CI = 0.54-0.97) and more than 365 tablets of cumulative calcium intake (OR = 0.36, 95% CI = 0.16-0.83), but linear trends were not observed for the frequency or duration of any supplement intake. We did not observe any strong associations between vitamin or mineral supplement intake and the risk of HNC.
PMCID:3376697
PMID: 22173631
ISSN: 0020-7136
CID: 174578

Aspirin but not ibuprofen use is associated with reduced risk of prostate cancer: a PLCO Study

Shebl, F M; Sakoda, L C; Black, A; Koshiol, J; Andriole, G L; Grubb, R; Church, T R; Chia, D; Zhou, C; Chu, L W; Huang, W-Y; Peters, U; Kirsh, V A; Chatterjee, N; Leitzmann, M F; Hayes, R B; Hsing, A W
Background:Although most epidemiological studies suggest that non-steroidal anti-inflammatory drug use is inversely associated with prostate cancer risk, the magnitude and specificity of this association remain unclear.Methods:We examined self-reported aspirin and ibuprofen use in relation to prostate cancer risk among 29 450 men ages 55-74 who were initially screened for prostate cancer from 1993 to 2001 in the Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial. Men were followed from their first screening exam until 31 December 2009, during which 3575 cases of prostate cancer were identified.Results:After adjusting for potential confounders, the hazard ratios (HRs) of prostate cancer associated with <1 and >/=1 pill of aspirin daily were 0.98 (95% confidence interval (CI), 0.90-1.07) and 0.92 (95% CI: 0.85-0.99), respectively, compared with never use (P for trend 0.04). The effect of taking at least one aspirin daily was more pronounced when restricting the analyses to men older than age 65 or men who had a history of cardiovascular-related diseases or arthritis (HR (95% CI); 0.87 (0.78-0.97), 0.89 (0.80-0.99), and 0.88 (0.78-1.00), respectively). The data did not support an association between ibuprofen use and prostate cancer risk.Conclusion:Daily aspirin use, but not ibuprofen use, was associated with lower risk of prostate cancer risk.
PMCID:3389420
PMID: 22722313
ISSN: 0007-0920
CID: 171587

Y chromosome haplogroups and prostate cancer in populations of European and Ashkenazi Jewish ancestry

Wang, Zhaoming; Parikh, Hemang; Jia, Jinping; Myers, Timothy; Yeager, Meredith; Jacobs, Kevin B; Hutchinson, Amy; Burdett, Laurie; Ghosh, Arpita; Thun, Michael J; Gapstur, Susan M; Ryan Diver, W; Virtamo, Jarmo; Albanes, Demetrius; Cancel-Tassin, Geraldine; Valeri, Antoine; Cussenot, Olivier; Offit, Kenneth; Giovannucci, Ed; Ma, Jing; Stampfer, Meir J; Michael Gaziano, J; Hunter, David J; Dutra-Clarke, Ana; Kirchhoff, Tomas; Alavanja, Michael; Freeman, Laura B; Koutros, Stella; Hoover, Robert; Berndt, Sonja I; Hayes, Richard B; Agalliu, Ilir; Burk, Robert D; Wacholder, Sholom; Thomas, Gilles; Amundadottir, Laufey
Genetic variation on the Y chromosome has not been convincingly implicated in prostate cancer risk. To comprehensively analyze the role of inherited Y chromosome variation in prostate cancer risk in individuals of European ancestry, we genotyped 34 binary Y chromosome markers in 3,995 prostate cancer cases and 3,815 control subjects drawn from four studies. In this set, we identified nominally significant association between a rare haplogroup, E1b1b1c, and prostate cancer in stage I (P = 0.012, OR = 0.51; 95% confidence interval 0.30-0.87). Population substructure of E1b1b1c carriers suggested Ashkenazi Jewish ancestry, prompting a replication phase in individuals of both European and Ashkenazi Jewish ancestry. The association was not significant for prostate cancer overall in studies of either Ashkenazi Jewish (1,686 cases and 1,597 control subjects) or European (686 cases and 734 control subjects) ancestry (P (meta) = 0.078), but a meta-analysis of stage I and II studies revealed a nominally significant association with prostate cancer risk (P (meta) = 0.010, OR = 0.77; 95% confidence interval 0.62-0.94). Comparing haplogroup frequencies between studies, we noted strong similarities between those conducted in the US and France, in which the majority of men carried R1 haplogroups, resembling Northwestern European populations. On the other hand, Finns had a remarkably different haplogroup distribution with a preponderance of N1c and I1 haplogroups. In summary, our results suggest that inherited Y chromosome variation plays a limited role in prostate cancer etiology in European populations but warrant follow-up in additional large and well characterized studies of multiple ethnic backgrounds.
PMCID:3374121
PMID: 22271044
ISSN: 0340-6717
CID: 170668

Characterization of Gene-Environment Interactions for Colorectal Cancer Susceptibility Loci

Hutter, CM; Chang-Claude, J; Slattery, ML; Pflugeisen, BM; Lin, Y; Duggan, D; Nan, H; Lemire, M; Rangrej, J; Figueiredo, JC; Jiao, S; Harrison, TA; Liu, Y; Chen, LS; Stelling, DL; Warnick, GS; Hoffmeister, M; Kury, S; Fuchs, CS; Giovannucci, E; Hazra, A; Kraft, P; Hunter, DJ; Gallinger, S; Zanke, BW; Brenner, H; Frank, B; Ma, J; Ulrich, CM; White, E; Newcomb, PA; Kooperberg, C; Lacroix, AZ; Prentice, RL; Jackson, RD; Schoen, RE; Chanock, SJ; Berndt, SI; Hayes, RB; Caan, BJ; Potter, JD; Hsu, L; Bezieau, S; Chan, AT; Hudson, TJ; Peters, U
Genome-wide association studies (GWAS) have identified more than a dozen loci associated with colorectal cancer (CRC) risk. Here, we examined potential effect-modification between single-nucleotide polymorphisms (SNP) at 10 of these loci and probable or established environmental risk factors for CRC in 7,016 CRC cases and 9,723 controls from nine cohort and case-control studies. We used meta-analysis of an efficient empirical-Bayes estimator to detect potential multiplicative interactions between each of the SNPs [rs16892766 at 8q23.3 (EIF3H/UTP23), rs6983267 at 8q24 (MYC), rs10795668 at 10p14 (FLJ3802842), rs3802842 at 11q23 (LOC120376), rs4444235 at 14q22.2 (BMP4), rs4779584 at 15q13 (GREM1), rs9929218 at 16q22.1 (CDH1), rs4939827 at 18q21 (SMAD7), rs10411210 at 19q13.1 (RHPN2), and rs961253 at 20p12.3 (BMP2)] and select major CRC risk factors (sex, body mass index, height, smoking status, aspirin/nonsteroidal anti-inflammatory drug use, alcohol use, and dietary intake of calcium, folate, red meat, processed meat, vegetables, fruit, and fiber). The strongest statistical evidence for a gene-environment interaction across studies was for vegetable consumption and rs16892766, located on chromosome 8q23.3, near the EIF3H and UTP23 genes (nominal P(interaction) = 1.3 x 10(-4); adjusted P = 0.02). The magnitude of the main effect of the SNP increased with increasing levels of vegetable consumption. No other interactions were statistically significant after adjusting for multiple comparisons. Overall, the association of most CRC susceptibility loci identified in initial GWAS seems to be invariant to the other risk factors considered; however, our results suggest potential modification of the rs16892766 effect by vegetable consumption. Cancer Res; 72(8); 2036-44. (c)2012 AACR.
PMCID:3374720
PMID: 22367214
ISSN: 0008-5472
CID: 166892