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A motion compensating prior for dynamic MRI reconstruction using combination of compressed sensing and parallel imaging
Chapter by: Bilen, Çaǧdaş; Selesnick, Ivan; Wang, Yao; Otazo, Ricardo; Sodickson, Daniel K.
in: 2011 IEEE Signal Processing in Medicine and Biology Symposium, SPMB 2011 by
[S.l.] : Society of Photo-Optical Instrumentation EngineersBellingham, WA, United States, 2011
pp. ?-?
ISBN: 9781467303729
CID: 2869362
TROMBONE: T(1) -relaxation-oblivious mapping of transmit radio-frequency field (B(1) ) for MRI at high magnetic fields
Fleysher, Roman; Fleysher, Lazar; Inglese, Matilde; Sodickson, Daniel
Fast, 3D radio-frequency transmit field (B(1) ) mapping is important for parallel transmission, spatially selective pulse design and quantitative MRI applications. It has been shown that actual flip angle imaging-two interleaved spoiled gradient recalled echo images acquired in steady state with two very short time delays (TR(1) , TR(2) )-is an attractive method of B(1) mapping. Herein, we describe the TROMBONE method that efficiently integrates actual flip angle imaging with EPI imaging, alleviates very short TR requirement of actual flip angle imaging and through their synergy yields up to 16 times higher precision in B(1) estimation in the same experimental time. High precision of TROMBONE can be traded for faster scans. The map of B(1) reconstructed from the ratio of intensities of two images is insensitive to longitudinal relaxation time (T(1) ) in the physiologically relevant range. A table of the optimal acquisition protocol parameters for various target experimental conditions is provided. Magn Reson Med, 2011. (c) 2011 Wiley-Liss, Inc
PMCID:3130840
PMID: 21394765
ISSN: 1522-2594
CID: 135536
Extended para-hydrogenation monitored by NMR spectroscopy
Tang, Joel A; Gruppi, Francesca; Fleysher, Roman; Sodickson, Daniel K; Canary, James W; Jerschow, Alexej
A system that provides a sustained hyperpolarized (1)H NMR signal in an aqueous medium is reported. The enhanced signal lasts much longer than typical (1)H T(1) values, uncovering new possibilities for implementing hyperpolarized (1)H NMR/MRI experiments or performing kinetics studies that would not otherwise be detectable
PMID: 21079839
ISSN: 1364-548x
CID: 134194
Thalamic resting-state functional networks: disruption in patients with mild traumatic brain injury
Tang, Lin; Ge, Yulin; Sodickson, Daniel K; Miles, Laura; Zhou, Yongxia; Reaume, Joseph; Grossman, Robert I
Purpose: To explore the neural correlates of the thalamus by using resting-state functional magnetic resonance (MR) imaging and to investigate whether thalamic resting-state networks (RSNs) are disrupted in patients with mild traumatic brain injury (MTBI). Materials and Methods: This HIPAA-compliant study was approved by the institutional review board, and written informed consent was obtained from 24 patients with MTBI and 17 healthy control subjects. The patients had varying degrees of symptoms, with a mean disease duration of 22 days. The resting-state functional MR imaging data were analyzed by using a standard seed-based whole-brain correlation method to characterize thalamic RSNs. Student t tests were used to perform comparisons. The association between thalamic RSNs and performance on neuropsychologic and neurobehavioral measures was also investigated in patients with MTBI by using Spearman rank correlation. Results: A normal pattern of thalamic RSNs was demonstrated in healthy subjects. This pattern was characterized as representing relatively symmetric and restrictive functional thalamocortical connectivity, suggesting an inhibitory property of the thalamic neurons during the resting state. This pattern was disrupted, with significantly increased thalamic RSNs (P </= .005) and decreased symmetry (P = .03) in patients with MTBI compared with healthy control subjects. Increased functional thalamocortical redistributive connectivity was correlated with diminished neurocognitive functions and clinical symptoms in patients with MTBI. Conclusion: These findings of abnormal thalamic RSNs lend further support to the presumed subtle thalamic injury in patients with MTBI. Resting-state functional MR imaging can be used as an additional imaging modality for detection of thalamocortical connectivity abnormalities and for better understanding of the complex persistent postconcussive syndrome. (c) RSNA, 2011
PMCID:3157002
PMID: 21775670
ISSN: 1527-1315
CID: 136638
Accelerated cardiac T(2) mapping using breath-hold multiecho fast spin-echo pulse sequence with k-t FOCUSS
Feng L; Otazo R; Jung H; Jensen JH; Ye JC; Sodickson DK; Kim D
Cardiac T(2) mapping is a promising method for quantitative assessment of myocardial edema and iron overload. We have developed a new multiecho fast spin echo (ME-FSE) pulse sequence for breath-hold T(2) mapping with acceptable spatial resolution. We propose to further accelerate this new ME-FSE pulse sequence using k-t focal underdetermined system solver adapted with a framework that uses both compressed sensing and parallel imaging (e.g., sensitivity encoding) to achieve higher spatial resolution. We imaged 12 control subjects in midventricular short-axis planes and compared the accuracy of T(2) measurements obtained using ME-FSE with generalized autocalibrating partially parallel acquisitions and ME-FSE with k-t focal underdetermined system solver. For image reconstruction, we used a bootstrapping two-step approach, where in the first step fast Fourier transform was used as the sparsifying transform and in the final step principal component analysis was used as the sparsifying transform. When compared with T(2) measurements obtained using generalized autocalibrating partially parallel acquisitions, T(2) measurements obtained using k-t focal underdetermined system solver were in excellent agreement (mean difference = 0.04 msec; upper/lower 95% limits of agreement were 2.26/-2.19 msec, respectively). The proposed accelerated ME-FSE pulse sequence with k-t focal underdetermined system solver is a promising investigational method for rapid T(2) measurement of the heart with relatively high spatial resolution (1.7 x 1.7 mm(2) ). Magn Reson Med, 2011. (c) 2011 Wiley-Liss, Inc
PMCID:3097270
PMID: 21360737
ISSN: 1522-2594
CID: 127198
Intravoxel incoherent motion imaging of tumor microenvironment in locally advanced breast cancer
Sigmund, E E; Cho, G Y; Kim, S; Finn, M; Moccaldi, M; Jensen, J H; Sodickson, D K; Goldberg, J D; Formenti, S; Moy, L
Diffusion-weighted imaging plays important roles in cancer diagnosis, monitoring, and treatment. Although most applications measure restricted diffusion by tumor cellularity, diffusion-weighted imaging is also sensitive to vascularity through the intravoxel incoherent motion effect. Hypervascularity can confound apparent diffusion coefficient measurements in breast cancer. We acquired multiple b-value diffusion-weighted imaging at 3 T in a cohort of breast cancer patients and performed biexponential intravoxel incoherent motion analysis to extract tissue diffusivity (D(t) ), perfusion fraction (f(p) ), and pseudodiffusivity (D(p) ). Results indicated significant differences between normal fibroglandular tissue and malignant lesions in apparent diffusion coefficient mean (+/-standard deviation) values (2.44 +/- 0.30 vs. 1.34 +/- 0.39 mum(2) /msec, P < 0.01) and D(t) (2.36 +/- 0.38 vs. 1.15 +/- 0.35 mum(2) /msec, P < 0.01). Lesion diffusion-weighted imaging signals demonstrated biexponential character in comparison to monoexponential normal tissue. There is some differentiation of lesion subtypes (invasive ductal carcinoma vs. other malignant lesions) with f(p) (10.5 +/- 5.0% vs. 6.9 +/- 2.9%, P = 0.06), but less so with D(t) (1.14 +/- 0.32 mum(2) /msec vs. 1.18 +/- 0.52 mum(2) /msec, P = 0.88) and D(p) (14.9 +/- 11.4 mum(2) /msec vs. 16.1 +/- 5.7 mum(2) /msec, P = 0.75). Comparison of intravoxel incoherent motion biomarkers with contrast enhancement suggests moderate correlations. These results suggest the potential of intravoxel incoherent motion vascular and cellular biomarkers for initial grading, progression monitoring, or treatment assessment of breast tumors. Magn Reson Med, 2011. (c) 2011 Wiley-Liss, Inc
PMCID:4692245
PMID: 21287591
ISSN: 1522-2594
CID: 131795
Cutoff-Free Traveling Wave NMR
Tang, Joel A.; Wiggins, Graham C.; Sodickson, Daniel K.; Jerschow, Alexej
Recently, the concept of traveling wave NMR/MRI was introduced by Brunner et al. (Nature 2009;457:994-992), who demonstrated MR images acquired using radio frequency (RF) waves propagating down the bore of a MR scanner which acts as a waveguide. One of the significant limitations of this approach is that each bore has a specific cutoff frequency, which can be higher than most Larmor frequencies at the magnetic field strengths commonly in use for MR imaging and spectroscopy today. One can overcome this limitation by using a central conductor in the waveguide and thereby converting it in to a transmission line which has no cutoff frequency. Broadband propagation of waves through the sample thus becomes possible. NMR spectra and images with such an arrangement are presented and traveling wave behavior is demonstrated. In addition to facilitating NMR spectroscopy and imaging in smaller bores via traveling waves, this approach also allows one to perform multinuclear traveling wave experiments (an example of which is shown), and to study otherwise difficult-to-access samples in unusual geometries. (C) 2011 Wiley Periodicals, Inc. Concepts Magn Reson Part A 38: 253-267, 2011
ISI:000297415900005
ISSN: 1546-6086
CID: 147728
A 7-Tesla High Density Transmit with 28-Channel Receive-Only Array Knee Coil
Finnerty, M; Yang, X; Zheng, T; Heilman, J; Castrilla, N; Herczak, J; Fujita, H; Ibrahim, T S; Boada, F; Zhao, T; Schmitt, F; Stoeckel, B; Potthast, A; Wicklow, K; Trattnig, S; Mamisch, C; Recht, M; Sodickson, D; Wiggins, G; Zhu, Y
PMCID:4205507
PMID: 25346622
ISSN: 1524-6965
CID: 2529472
ON COMPRESSED SENSING IN PARALLEL MRI OF CARDIAC PERFUSION USING TEMPORALWAVELET AND TV REGULARIZATION [Meeting Abstract]
Bilen, C; Selesnick, IW; Wang, Y; Otazo, R; Kim, D; Axel, L; Sodickson, DK
Imaging of cardiac perfusion with MR is a challenging area of research especially due to the motion of the heart and limited time of data acquisition. Compressed sensing is a popular signal estimation method recently adopted by researchers in MRI which can improve the spatial and/or temporal resolution of the acquired images by reducing the number of necessary samples for image reconstruction. This paper focuses on performance of temporal regularization with total variation and wavelets in compressed sensing. The impact of the choice of regularization parameters on the image quality and the temporal variation of intensity in region of interests (ROIs) are discussed. It is found that selecting the regularization parameter so as to optimize the quality of the reconstructed image sequence as a whole, leads to erroneous reconstruction of certain regions due to over regularization.
ISI:000287096000154
ISSN: 1520-6149
CID: 2421512
Highly-accelerated first-pass cardiac perfusion MRI using compressed sensing and parallel imaging [Meeting Abstract]
Otazo R.; Kim D.; Axel L.; Sodickson D.K.
Introduction: Robust implementation of first-pass cardiac perfusion MRI for clinical use can be particularly challenging due to competing constraints of spatial and temporal resolution, and spatial coverage [1]. k-t SENSE [2] can be used to achieve high accelerations, but dynamic training data are required which reduces the effective acceleration rate. An alternative acceleration technique is compressed sensing (CS) [3], where spatial and temporal correlations result in sparsity of image series content, which may in turn be exploited to achieve high levels of undersampling without losing image information. We have recently presented the combination of compressed sensing and parallel imaging (JOCS: JOint-CS [4]) to increase the acceleration rate of CS alone. In this work, we demonstrate first-pass cardiac perfusion MRI with whole-heart coverage and high spatial and temporal resolution using the JOCS technique. Purpose: Evaluate the feasibility of highly-accelerated first-pass cardiac perfusion MRI with whole-heart coverage per heartbeat using JOCS. Methods: First-pass cardiac perfusion MRI with 0.1 mmol/kg of Gd-DTPA (Magnevist) was performed in two healthy volunteers and one patient with coronary artery disease. A modified multislice TurboFLASH sequence was employed on a whole-body 3 T scanner (Siemens;Tim-Trio) using the 12-element body matrix coil array. The relevant imaging parameters include: FOV = 320 mm x 320 mm, image-resolution = 1.7 mm x 1.7 mm, slice-thickness = 8 mm, TE/TR = 1.3 ms/2.5 ms, repetitions = 40. Acceleration was accomplished using ky-t random undersampling to produce the required incoherence. Breath-hold measurements with acceleration factor of R = 8 (allowing 10 (Figure presented) (Figure presented) acquired slices per heartbeat, temporal-resolution = 60 ms/slice) were performed. In the patient, delayed-enhancement images were obtained using a phase-sensitive inversion recovery (PSIR) [6] pulse sequence, 15 minutes after the administration of the contrast agent. Image reconstruction was performed using the JOCS algorithm [5]. A Fourier transform along the time dimension and finite differences along the spatial dimensions were used as sparsifying transforms. Results: Fig. 1 shows the reconstructed images (10 slices) for the peak blood and peak myocardial wall enhancement phases for one volunteer study. The reconstructed images covered most of the heart with adequate blood and myocardial wall enhancement and good image quality. Fig. 2 shows perfusion images at peak myocardial wall enhancement in three short-axis views (mid-to-apical) with perfusion defects for the patient study. The corresponding PSIR delayed-enhancement images show myocardial scarring regions that correlate well with the perfusion defect regions. Conclusion: JOCS enables first-pass cardiac perfusion MRI studies with whole-heart coverage and high spatial (<2 mm) and temporal (60 ms/slice) resolution. Future work will explore 3D imaging and the use of larger numbers of coils
EMBASE:70455946
ISSN: 1097-6647
CID: 135284