Try a new search

Format these results:

Searched for:

in-biosketch:yes

person:nagelk01

Total Results:

32


Information-theoretic analysis of realistic odor plumes: What cues are useful for determining location?

Boie, Sebastian D; Connor, Erin G; McHugh, Margaret; Nagel, Katherine I; Ermentrout, G Bard; Crimaldi, John P; Victor, Jonathan D
Many species rely on olfaction to navigate towards food sources or mates. Olfactory navigation is a challenging task since odor environments are typically turbulent. While time-averaged odor concentration varies smoothly with the distance to the source, instaneous concentrations are intermittent and obtaining stable averages takes longer than the typical intervals between animals' navigation decisions. How to effectively sample from the odor distribution to determine sampling location is the focus on this article. To investigate which sampling strategies are most informative about the location of an odor source, we recorded three naturalistic stimuli with planar lased-induced fluorescence and used an information-theoretic approach to quantify the information that different sampling strategies provide about sampling location. Specifically, we compared multiple sampling strategies based on a fixed number of coding bits for encoding the olfactory stimulus. When the coding bits were all allocated to representing odor concentration at a single sensor, information rapidly saturated. Using the same number of coding bits in two sensors provides more information, as does coding multiple samples at different times. When accumulating multiple samples at a fixed location, the temporal sequence does not yield a large amount of information and can be averaged with minimal loss. Furthermore, we show that histogram-equalization is not the most efficient way to use coding bits when using the olfactory sample to determine location.
PMCID:6054425
PMID: 29990365
ISSN: 1553-7358
CID: 3192532

Active Zone Scaffold Protein Ratios Tune Functional Diversity across Brain Synapses

Fulterer, Andreas; Andlauer, Till F M; Ender, Anatoli; Maglione, Marta; Eyring, Katherine; Woitkuhn, Jennifer; Lehmann, Martin; Matkovic-Rachid, Tanja; Geiger, Joerg R P; Walter, Alexander M; Nagel, Katherine I; Sigrist, Stephan J
High-throughput electron microscopy has started to reveal synaptic connectivity maps of single circuits and whole brain regions, for example, in the Drosophila olfactory system. However, efficacy, timing, and frequency tuning of synaptic vesicle release are also highly diversified across brain synapses. These features critically depend on the nanometer-scale coupling distance between voltage-gated Ca2+ channels (VGCCs) and the synaptic vesicle release machinery. Combining light super resolution microscopy with in vivo electrophysiology, we show here that two orthogonal scaffold proteins (ELKS family Bruchpilot, BRP, and Syd-1) cluster-specific (M)Unc13 release factor isoforms either close (BRP/Unc13A) or further away (Syd-1/Unc13B) from VGCCs across synapses of the Drosophila olfactory system, resulting in different synapse-characteristic forms of short-term plasticity. Moreover, BRP/Unc13A versus Syd-1/Unc13B ratios were different between synapse types. Thus, variation in tightly versus loosely coupled scaffold protein/(M)Unc13 modules can tune synapse-type-specific release features, and "nanoscopic molecular fingerprints" might identify synapses with specific temporal features.
PMID: 29719243
ISSN: 2211-1247
CID: 3061662

Mechanisms Underlying Population Response Dynamics in Inhibitory Interneurons of the Drosophila Antennal Lobe

Nagel, Katherine I; Wilson, Rachel I
Local inhibitory neurons control the timing of neural activity in many circuits. To understand how inhibition controls timing, it is important to understand the dynamics of activity in populations of local inhibitory interneurons, as well as the mechanisms that underlie these dynamics. Here we describe thein vivoresponse dynamics of a large population of inhibitory local neurons (LNs) in theDrosophila melanogasterantennal lobe, the analog of the vertebrate olfactory bulb, and we dissect the network and intrinsic mechanisms that give rise to these dynamics. Some LNs respond to odor onsets ("ON" cells) and others to offsets ("OFF" cells), whereas still others respond at both times. Moreover, different LNs signal odor concentration fluctuations on different timescales. Some respond rapidly, and can track rapid concentration fluctuations. Others respond slowly, and are best at tracking slow fluctuations. We found a continuous spectrum of preferred stimulation timescales among LNs, as well as a continuum of ON-OFF behavior. Usingin vivowhole-cell recordings, we show that the timing of an LN's response (ON vs OFF) can be predicted from the interplay of excitatory and inhibitory synaptic currents that it receives. Meanwhile, the preferred timescale of an LN is related to its intrinsic properties. These results illustrate how a population of inhibitory interneurons can collectively encode bidirectional changes in stimulus intensity on multiple timescales, and how this can arise via an interaction between synaptic and intrinsic mechanisms. SIGNIFICANCE STATEMENT: Most neural circuits contain diverse populations of inhibitory interneurons. The way inhibition shapes network activity will depend on the spiking dynamics of the interneuron population. Here we describe the dynamics of activity in a large population of inhibitory interneurons in the first brain relay of the fruit fly olfactory system. Because odor plumes fluctuate on multiple timescales, the drive to this circuit can vary over a range of frequencies. We show how synaptic and cellular mechanisms interact to recruit different interneurons at different times, and in response to different temporal features of odor stimuli. As a result, inhibition is recruited over a range of conditions, and there is the potential to tune the timing of inhibition as the environment changes.
PMCID:4829653
PMID: 27076428
ISSN: 1529-2401
CID: 2102952

Synaptic and circuit mechanisms promoting broadband transmission of olfactory stimulus dynamics

Nagel, Katherine I; Hong, Elizabeth J; Wilson, Rachel I
Sensory stimuli fluctuate on many timescales. However, short-term plasticity causes synapses to act as temporal filters, limiting the range of frequencies that they can transmit. How synapses in vivo might transmit a range of frequencies in spite of short-term plasticity is poorly understood. The first synapse in the Drosophila olfactory system exhibits short-term depression, but can transmit broadband signals. Here we describe two mechanisms that broaden the frequency characteristics of this synapse. First, two distinct excitatory postsynaptic currents transmit signals on different timescales. Second, presynaptic inhibition dynamically updates synaptic properties to promote accurate transmission of signals across a wide range of frequencies. Inhibition is transient, but grows slowly, and simulations reveal that these two features of inhibition promote broadband synaptic transmission. Dynamic inhibition is often thought to restrict the temporal patterns that a neuron responds to, but our results illustrate a different idea: inhibition can expand the bandwidth of neural coding.
PMCID:4289142
PMID: 25485755
ISSN: 1546-1726
CID: 1560582

Smelling on the fly: sensory cues and strategies for olfactory navigation in Drosophila

Gaudry, Quentin; Nagel, Katherine I; Wilson, Rachel I
Navigating toward (or away from) a remote odor source is a challenging problem that requires integrating olfactory information with visual and mechanosensory cues. Drosophila melanogaster is a useful organism for studying the neural mechanisms of these navigation behaviors. There are a wealth of genetic tools in this organism, as well as a history of inventive behavioral experiments. There is also a large and growing literature in Drosophila on the neural coding of olfactory, visual, and mechanosensory stimuli. Here we review recent progress in understanding how these stimulus modalities are encoded in the Drosophila nervous system. We also discuss what strategies a fly might use to navigate in a natural olfactory landscape while making use of all these sources of sensory information. We emphasize that Drosophila are likely to switch between multiple strategies for olfactory navigation, depending on the availability of various sensory cues. Finally, we highlight future research directions that will be important in understanding the neural circuits that underlie these behaviors.
PMCID:3323672
PMID: 22221864
ISSN: 0959-4388
CID: 1072442

Two-dimensional adaptation in the auditory forebrain

Sharpee, Tatyana O; Nagel, Katherine I; Doupe, Allison J
Sensory neurons exhibit two universal properties: sensitivity to multiple stimulus dimensions, and adaptation to stimulus statistics. How adaptation affects encoding along primary dimensions is well characterized for most sensory pathways, but if and how it affects secondary dimensions is less clear. We studied these effects for neurons in the avian equivalent of primary auditory cortex, responding to temporally modulated sounds. We showed that the firing rate of single neurons in field L was affected by at least two components of the time-varying sound log-amplitude. When overall sound amplitude was low, neural responses were based on nonlinear combinations of the mean log-amplitude and its rate of change (first time differential). At high mean sound amplitude, the two relevant stimulus features became the first and second time derivatives of the sound log-amplitude. Thus a strikingly systematic relationship between dimensions was conserved across changes in stimulus intensity, whereby one of the relevant dimensions approximated the time differential of the other dimension. In contrast to stimulus mean, increases in stimulus variance did not change relevant dimensions, but selectively increased the contribution of the second dimension to neural firing, illustrating a new adaptive behavior enabled by multidimensional encoding. Finally, we demonstrated theoretically that inclusion of time differentials as additional stimulus features, as seen so prominently in the single-neuron responses studied here, is a useful strategy for encoding naturalistic stimuli, because it can lower the necessary sampling rate while maintaining the robustness of stimulus reconstruction to correlated noise.
PMCID:3296429
PMID: 21753019
ISSN: 0022-3077
CID: 1072452

A bird brain's view of auditory processing and perception

Nagel, Katherine; Kim, Gunsoo; McLendon, Helen; Doupe, Allison
By studying the primary forebrain auditory area of songbirds, field L, using a song-inspired synthetic stimulus and reverse correlation techniques, we found a surprisingly systematic organization of this area, with nearly all neurons narrowly tuned along the spectral dimension, the temporal dimension, or both; there were virtually no strongly orientation-sensitive cells, and in the areas that we recorded, cells broadly tuned in both time and frequency were rare. In addition, cells responsive to fast temporal frequencies predominated only in the field L input layer, suggesting that neurons with fast and slow responses are concentrated in different regions. Together with other songbird data and work from chicks and mammals, these findings suggest that sampling a range of temporal and spectral modulations, rather than orientation in time-frequency space, is the organizing principle of forebrain auditory sensitivity. We then examined the role of these acoustic parameters important to field L organization in a behavioral task. Birds' categorization of songs fell off rapidly when songs were altered in frequency, but, despite the temporal sensitivity of field L neurons, the same birds generalized well to songs that were significantly changed in timing. These behavioral data point out that we cannot assume that animals use the information present in particular neurons without specifically testing perception.
PMCID:3065528
PMID: 20851756
ISSN: 0378-5955
CID: 1072502

Biophysical mechanisms underlying olfactory receptor neuron dynamics

Nagel, Katherine I; Wilson, Rachel I
The responses of olfactory receptor neurons (ORNs) to odors have complex dynamics. Using genetics and pharmacology, we found that these dynamics in Drosophila ORNs could be separated into sequential steps, corresponding to transduction and spike generation. Each of these steps contributed distinct dynamics. Transduction dynamics could be largely explained by a simple kinetic model of ligand-receptor interactions, together with an adaptive feedback mechanism that slows transduction onset. Spiking dynamics were well described by a differentiating linear filter that was stereotyped across odors and cells. Genetic knock-down of sodium channels reshaped this filter, implying that it arises from the regulated balance of intrinsic conductances in ORNs. Complex responses can be understood as a consequence of how the stereotyped spike filter interacts with odor- and receptor-specific transduction dynamics. However, in the presence of rapidly fluctuating natural stimuli, spiking simply increases the speed and sensitivity of encoding.
PMCID:3030680
PMID: 21217763
ISSN: 1097-6256
CID: 1072462

Differential influence of frequency, timing, and intensity cues in a complex acoustic categorization task

Nagel, Katherine I; McLendon, Helen M; Doupe, Allison J
Songbirds, which, like humans, learn complex vocalizations, provide an excellent model for the study of acoustic pattern recognition. Here we examined the role of three basic acoustic parameters in an ethologically relevant categorization task. Female zebra finches were first trained to classify songs as belonging to one of two males and then asked whether they could generalize this knowledge to songs systematically altered with respect to frequency, timing, or intensity. Birds' performance on song categorization fell off rapidly when songs were altered in frequency or intensity, but they generalized well to songs that were changed in duration by >25%. Birds were not deaf to timing changes, however; they detected these tempo alterations when asked to discriminate between the same song played back at two different speeds. In addition, when birds were retrained with songs at many intensities, they could correctly categorize songs over a wide range of volumes. Thus although they can detect all these cues, birds attend less to tempo than to frequency or intensity cues during song categorization. These results are unexpected for several reasons: zebra finches normally encounter a wide range of song volumes but most failed to generalize across volumes in this task; males produce only slight variations in tempo, but females generalized widely over changes in song duration; and all three acoustic parameters are critical for auditory neurons. Thus behavioral data place surprising constraints on the relationship between previous experience, behavioral task, neural responses, and perception. We discuss implications for models of auditory pattern recognition.
PMCID:2944678
PMID: 20610781
ISSN: 0022-3077
CID: 1072472

Organizing principles of spectro-temporal encoding in the avian primary auditory area field L

Nagel, Katherine I; Doupe, Allison J
The organization of postthalamic auditory areas remains unclear in many respects. Using a stimulus based on properties of natural sounds, we mapped spectro-temporal receptive fields (STRFs) of neurons in the primary auditory area field L of unanesthetized zebra finches. Cells were sensitive to only a subset of possible acoustic features: nearly all neurons were narrowly tuned along the spectral dimension, the temporal dimension, or both; broadly tuned and strongly orientation-sensitive cells were rare. At high stimulus intensities, neurons were sensitive to differences in sound energy along their preferred dimension, while at lower intensities, neurons behaved more like simple detectors. Finally, we found a systematic relationship between neurons' STRFs, their electrophysiological properties, and their location in field L input or output layers. These data suggest that spectral and temporal processing are segregated within field L, and provide a unifying account of how field L response properties depend on stimulus intensity.
PMCID:2547416
PMID: 18579083
ISSN: 0896-6273
CID: 1072482