Try a new search

Format these results:

Searched for:

in-biosketch:yes

person:sodicd01

Total Results:

234


MP-RAVE: IR-Prepared T1 -Weighted Radial Stack-of-Stars 3D GRE imaging with retrospective motion correction

Solomon, Eddy; Lotan, Eyal; Zan, Elcin; Sodickson, Daniel K; Block, Kai Tobias; Chandarana, Hersh
PURPOSE/OBJECTIVE:-weighted radial stack-of-stars 3D gradient echo (GRE) sequence with comparable image quality to conventional MP-RAGE and to demonstrate how the radial acquisition scheme can be utilized for additional retrospective motion correction to improve robustness to head motion. METHODS:The proposed sequence, named MP-RAVE, has been derived from a previously described radial stack-of-stars 3D GRE sequence (RAVE) and includes a 180° inversion recovery pulse that is generated once for every stack of radial views. The sequence is combined with retrospective 3D motion correction to improve robustness. The effectiveness has been evaluated in phantoms and healthy volunteers and compared to conventional MP-RAGE acquisition. RESULTS:MP-RAGE and MP-RAVE anatomical images were rated "good" to "excellent" in overall image quality, with artifact level between "mild" and "no artifacts", and with no statistically significant difference between methods. During head motion, MP-RAVE showed higher inherent robustness with artifacts confined to local brain regions. In combination with motion correction, MP-RAVE provided noticeably improved image quality during different head motion and showed statistically significant improvement in image sharpness. CONCLUSION/CONCLUSIONS:MP-RAVE provides comparable image quality and contrast to conventional MP-RAGE with improved robustness to head motion. In combination with retrospective 3D motion correction, MP-RAVE can be a useful alternative to MP-RAGE, especially in non-cooperative or pediatric patients.
PMID: 36763847
ISSN: 1522-2594
CID: 5426992

FastMRI Prostate: A Publicly Available, Biparametric MRI Dataset to Advance Machine Learning for Prostate Cancer Imaging

Tibrewala, Radhika; Dutt, Tarun; Tong, Angela; Ginocchio, Luke; Keerthivasan, Mahesh B; Baete, Steven H; Chopra, Sumit; Lui, Yvonne W; Sodickson, Daniel K; Chandarana, Hersh; Johnson, Patricia M
The fastMRI brain and knee dataset has enabled significant advances in exploring reconstruction methods for improving speed and image quality for Magnetic Resonance Imaging (MRI) via novel, clinically relevant reconstruction approaches. In this study, we describe the April 2023 expansion of the fastMRI dataset to include biparametric prostate MRI data acquired on a clinical population. The dataset consists of raw k-space and reconstructed images for T2-weighted and diffusion-weighted sequences along with slice-level labels that indicate the presence and grade of prostate cancer. As has been the case with fastMRI, increasing accessibility to raw prostate MRI data will further facilitate research in MR image reconstruction and evaluation with the larger goal of improving the utility of MRI for prostate cancer detection and evaluation. The dataset is available at https://fastmri.med.nyu.edu.
PMID: 37131871
ISSN: 2331-8422
CID: 5771552

Deep Learning Reconstruction Enables Prospectively Accelerated Clinical Knee MRI

Johnson, Patricia M; Lin, Dana J; Zbontar, Jure; Zitnick, C Lawrence; Sriram, Anuroop; Muckley, Matthew; Babb, James S; Kline, Mitchell; Ciavarra, Gina; Alaia, Erin; Samim, Mohammad; Walter, William R; Calderon, Liz; Pock, Thomas; Sodickson, Daniel K; Recht, Michael P; Knoll, Florian
Background MRI is a powerful diagnostic tool with a long acquisition time. Recently, deep learning (DL) methods have provided accelerated high-quality image reconstructions from undersampled data, but it is unclear if DL image reconstruction can be reliably translated to everyday clinical practice. Purpose To determine the diagnostic equivalence of prospectively accelerated DL-reconstructed knee MRI compared with conventional accelerated MRI for evaluating internal derangement of the knee in a clinical setting. Materials and Methods A DL reconstruction model was trained with images from 298 clinical 3-T knee examinations. In a prospective analysis, patients clinically referred for knee MRI underwent a conventional accelerated knee MRI protocol at 3 T followed by an accelerated DL protocol between January 2020 and February 2021. The equivalence of the DL reconstruction of the images relative to the conventional images for the detection of an abnormality was assessed in terms of interchangeability. Each examination was reviewed by six musculoskeletal radiologists. Analyses pertaining to the detection of meniscal or ligament tears and bone marrow or cartilage abnormalities were based on four-point ordinal scores for the likelihood of an abnormality. Additionally, the protocols were compared with use of four-point ordinal scores for each aspect of image quality: overall image quality, presence of artifacts, sharpness, and signal-to-noise ratio. Results A total of 170 participants (mean age ± SD, 45 years ± 16; 76 men) were evaluated. The DL-reconstructed images were determined to be of diagnostic equivalence with the conventional images for detection of abnormalities. The overall image quality score, averaged over six readers, was significantly better (P < .001) for the DL than for the conventional images. Conclusion In a clinical setting, deep learning reconstruction enabled a nearly twofold reduction in scan time for a knee MRI and was diagnostically equivalent with the conventional protocol. © RSNA, 2023 Supplemental material is available for this article. See also the editorial by Roemer in this issue.
PMID: 36648347
ISSN: 1527-1315
CID: 5462122

Exploring the Acceleration Limits of Deep Learning Variational Network-based Two-dimensional Brain MRI

Radmanesh, Alireza; Muckley, Matthew J; Murrell, Tullie; Lindsey, Emma; Sriram, Anuroop; Knoll, Florian; Sodickson, Daniel K; Lui, Yvonne W
PURPOSE/UNASSIGNED:To explore the limits of deep learning-based brain MRI reconstruction and identify useful acceleration ranges for general-purpose imaging and potential screening. MATERIALS AND METHODS/UNASSIGNED:potential use in a screening protocol. A Monte Carlo procedure was developed to estimate reconstruction error with only undersampled data. The model was evaluated on both in-domain and out-of-domain data. The 95% CIs were calculated using the percentile bootstrap method. RESULTS/UNASSIGNED:Radiologists rated 100% of 69 volumes as having sufficient image quality for general-purpose imaging at up to 4× acceleration and 65 of 69 volumes (94%) as having sufficient image quality for screening at up to 14× acceleration. The Monte Carlo procedure estimated ground truth peak signal-to-noise ratio and mean squared error with coefficients of determination greater than 0.5 at 2× to 20× acceleration levels. Out-of-distribution experiments demonstrated the model's ability to produce images substantially distinct from the training set, even at 100× acceleration. CONCLUSION/UNASSIGNED:© RSNA, 2022.
PMCID:9745443
PMID: 36523647
ISSN: 2638-6100
CID: 5382452

Brain-implanted conductors amplify radiofrequency fields in rodents: advantages and risks

Voroslakos, Mihaly; Yaghmazadeh, Omid; Alon, Leeor; Sodickson, Daniel K; Buzsaki, Gyorgy
ORIGINAL:0016469
ISSN: 2692-8205
CID: 5417722

Simultaneous 3D acquisition of 1 H MRF and 23 Na MRI

Yu, Zidan; Hodono, Shota; Dergachyova, Olga; Hilbert, Tom; Wang, Bili; Zhang, Bei; Brown, Ryan; Sodickson, Daniel K; Madelin, Guillaume; Cloos, Martijn A
PURPOSE/OBJECTIVE:, and proton density) and sodium density weighted images over the whole brain. METHODS:were evaluated in phantoms. Finally, in vivo application of the method was demonstrated in five healthy subjects. RESULTS:values measured using our method were lower than the results measured by other conventional techniques. CONCLUSIONS:
PMID: 34971454
ISSN: 1522-2594
CID: 5108342

Twenty-four-channel high-impedance glove array for hand and wrist MRI at 3T

Zhang, Bei; Wang, Bili; Ho, Justin; Hodono, Shota; Burke, Christopher; Lattanzi, Riccardo; Vester, Markus; Rehner, Robert; Sodickson, Daniel; Brown, Ryan; Cloos, Martijn
PURPOSE/OBJECTIVE:To present a novel 3T 24-channel glove array that enables hand and wrist imaging in varying postures. METHODS:The glove array consists of an inner glove holding the electronics and an outer glove protecting the components. The inner glove consists of four main structures: palm, fingers, wrist, and a flap that rolls over on top. Each structure was constructed out of three layers: a layer of electrostatic discharge flame-resistant fabric, a layer of scuba neoprene, and a layer of mesh fabric. Lightweight and flexible high impedance coil (HIC) elements were inserted into dedicated tubes sewn into the fabric. Coil elements were deliberately shortened to minimize the matching interface. Siemens Tim 4G technology was used to connect all 24 HIC elements to the scanner with only one plug. RESULTS:The 24-channel glove array allows large motion of both wrist and hand while maintaining the SNR needed for high-resolution imaging. CONCLUSION/CONCLUSIONS:In this work, a purpose-built 3T glove array that embeds 24 HIC elements is demonstrated for both hand and wrist imaging. The 24-channel glove array allows a great range of motion of both the wrist and hand while maintaining a high SNR and providing good theoretical acceleration performance, thus enabling hand and wrist imaging at different postures to extract kinematic information.
PMID: 34971464
ISSN: 1522-2594
CID: 5108352

Differences between human and machine perception in medical diagnosis

Makino, Taro; Jastrzębski, Stanisław; Oleszkiewicz, Witold; Chacko, Celin; Ehrenpreis, Robin; Samreen, Naziya; Chhor, Chloe; Kim, Eric; Lee, Jiyon; Pysarenko, Kristine; Reig, Beatriu; Toth, Hildegard; Awal, Divya; Du, Linda; Kim, Alice; Park, James; Sodickson, Daniel K; Heacock, Laura; Moy, Linda; Cho, Kyunghyun; Geras, Krzysztof J
Deep neural networks (DNNs) show promise in image-based medical diagnosis, but cannot be fully trusted since they can fail for reasons unrelated to underlying pathology. Humans are less likely to make such superficial mistakes, since they use features that are grounded on medical science. It is therefore important to know whether DNNs use different features than humans. Towards this end, we propose a framework for comparing human and machine perception in medical diagnosis. We frame the comparison in terms of perturbation robustness, and mitigate Simpson's paradox by performing a subgroup analysis. The framework is demonstrated with a case study in breast cancer screening, where we separately analyze microcalcifications and soft tissue lesions. While it is inconclusive whether humans and DNNs use different features to detect microcalcifications, we find that for soft tissue lesions, DNNs rely on high frequency components ignored by radiologists. Moreover, these features are located outside of the region of the images found most suspicious by radiologists. This difference between humans and machines was only visible through subgroup analysis, which highlights the importance of incorporating medical domain knowledge into the comparison.
PMCID:9046399
PMID: 35477730
ISSN: 2045-2322
CID: 5205672

Generalized Bloch model: A theory for pulsed magnetization transfer

Assländer, Jakob; Gultekin, Cem; Flassbeck, Sebastian; Glaser, Steffen J; Sodickson, Daniel K
PURPOSE/OBJECTIVE:The paper introduces a classical model to describe the dynamics of large spin-1/2 ensembles associated with nuclei bound in large molecule structures, commonly referred to as the semi-solid spin pool, and their magnetization transfer (MT) to spins of nuclei in water. THEORY AND METHODS/UNASSIGNED:Like quantum-mechanical descriptions of spin dynamics and like the original Bloch equations, but unlike existing MT models, the proposed model is based on the algebra of angular momentum in the sense that it explicitly models the rotations induced by radiofrequency (RF) pulses. It generalizes the original Bloch model to non-exponential decays, which are, for example, observed for semi-solid spin pools. The combination of rotations with non-exponential decays is facilitated by describing the latter as Green's functions, comprised in an integro-differential equation. RESULTS:Our model describes the data of an inversion-recovery magnetization-transfer experiment with varying durations of the inversion pulse substantially better than established models. We made this observation for all measured data, but in particular for pulse durations smaller than 300 μs. Furthermore, we provide a linear approximation of the generalized Bloch model that reduces the simulation time by approximately a factor 15,000, enabling simulation of the spin dynamics caused by a rectangular RF-pulse in roughly 2 μs. CONCLUSION/CONCLUSIONS:The proposed theory unifies the original Bloch model, Henkelman's steady-state theory for MT, and the commonly assumed rotation induced by hard pulses (i.e., strong and infinitesimally short applications of RF-fields) and describes experimental data better than previous models.
PMID: 34811794
ISSN: 1522-2594
CID: 5063472

Introductory magnetic resonance imaging physics

Chapter by: Guenette, Jeffrey P.; Sodickson, Daniel K.; Sodickson, Aaron D.
in: Handbook of Neuro-Oncology Neuroimaging by
[S.l.] : Elsevier, 2022
pp. 173-183
ISBN: 9780128229958
CID: 5501042