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Automated macular pathology diagnosis in retinal OCT images using multi-scale spatial pyramid with local binary patterns

Liu, Yu-Ying; Chen, Mei; Ishikawa, Hiroshi; Wollstein, Gadi; Schuman, Joel S; Rehg, James M
We address a novel problem domain in the analysis of optical coherence tomography (OCT) images: the diagnosis of multiple macular pathologies in retinal OCT images. The goal is to identify the presence of normal macula and each of three types of macular pathologies, namely, macular hole, macular edema, and age-related macular degeneration, in the OCT slice centered at the fovea. We use a machine learning approach based on global image descriptors formed from a multi-scale spatial pyramid. Our local descriptors are dimension-reduced Local Binary Pattern histograms, which are capable of encoding texture information from OCT images of the retina. Our representation operates at multiple spatial scales and granularities, leading to robust performance. We use 2-class Support Vector Machine classifiers to identify the presence of normal macula and each of the three pathologies. We conducted extensive experiments on a large dataset consisting of 326 OCT scans from 136 patients. The results show that the proposed method is very effective.
PMCID:3432412
PMID: 20879208
ISSN: 0302-9743
CID: 1885732

Diagnosis of Glaucomatous Optic Neuropathy

Chapter by: Folio, Lindsey S; Wollstein, Gadi; Ishikawa, Hiroshi; Kagemann, Larry; Schuman, Joel S
in: IMAGING THE EYE FROM FRONT TO BACK WITH RTVUE FOURIER-DOMAIN OPTICAL COHERENCE TOMOGRAPHY by Huang, D; Duker, JS; Fujimoto, JG; Lumbroso, B; Schuman, JS; Weinreb, RN [Eds]
THOROFARE : SLACK INC, 2010
pp. 219-243
ISBN:
CID: 1887132

Spectral domain optical coherence tomography for detection of foveal morphology in patients with nystagmus

Cronin, Tara H; Hertle, Richard W; Ishikawa, Hiroshi; Schuman, Joel S
PURPOSE: To evaluate the feasibility of spectral domain optical coherence tomography (SD-OCT) macular scanning as a means of studying the afferent visual system in nystagmus patients. METHODS: Nystagmus patients who underwent SD-OCT, clinical evaluation, and eye movement recordings were recruited for this prospective, single-center, noncomparative study. Three SD-OCT macular three-dimensional cube scans per eye (200 x 200 x 1024 samplings in a 6 x 6 mm region) were obtained for qualitative retinal morphology analysis. RESULTS: Nineteen patients (6-68 years; average, 19 years) were analyzed. Of these, 17 patients had infantile nystagmus syndrome, and 2 had fusion maldevelopment nystagmus; 17 patients (89%) had associated sensory system abnormalities, including 9 (47%) with albinism. Macular images were successfully obtained in all but 1 patient (95%). Of the 8 successfully imaged oculocutaneous patients, 7 patients demonstrated "fovea plana," and all demonstrated abnormal morphology. CONCLUSION: SD-OCT reliably provides detailed structural imaging of the fovea in nystagmus patients.
PMCID:2917909
PMID: 20006817
ISSN: 1528-3933
CID: 1885742

Detection of macular ganglion cell loss in glaucoma by Fourier-domain optical coherence tomography

Tan, Ou; Chopra, Vikas; Lu, Ake Tzu-Hui; Schuman, Joel S; Ishikawa, Hiroshi; Wollstein, Gadi; Varma, Rohit; Huang, David
PURPOSE: To map ganglion cell complex (GCC) thickness with high-speed Fourier-domain optical coherence tomography (FD-OCT) and compute novel macular parameters for glaucoma diagnosis. DESIGN: Observational, cross-sectional study. PARTICIPANTS: One hundred seventy-eight participants in the Advanced Imaging for Glaucoma Study, divided into 3 groups: 65 persons in the normal group, 78 in the perimetric glaucoma group (PG), and 52 in the preperimetric glaucoma group (PPG). METHODS: The RTVue FD-OCT system was used to map the macula over a 7 x 6 mm region. The macular OCT images were exported for automatic segmentation using software we developed. The program measured macular retinal (MR) thickness and GCC thickness. The GCC was defined as the combination of nerve fiber, ganglion cell, and inner plexiform layers. Pattern analysis was applied to the GCC map and the diagnostic powers of pattern-based diagnostic parameters were investigated. Results were compared with time-domain (TD) Stratus OCT measurements of MR and circumpapillary nerve fiber layer (NFL) thickness. MAIN OUTCOME MEASURES: Repeatability was assessed by intraclass correlation, pooled standard deviation, and coefficient of variation. Diagnostic power was assessed by the area under the receiver operator characteristic (AROC) curve. Measurements in the PG group were the primary measures of performance. RESULTS: The FD-OCT measurements of MR and GCC averages had significantly better repeatability than TD-OCT measurements of MR and NFL averages. The FD-OCT GCC average had significantly (P = 0.02) higher diagnostic power (AROC = 0.90) than MR (AROC = 0.85 for both FD-OCT and TD-OCT) in differentiating between PG and normal. One GCC pattern parameter, global loss volume, had significantly higher AROC (0.92) than the overall average (P = 0.01). The diagnostic powers of the best GCC parameters were statistically equal to TD-OCT NFL average. CONCLUSIONS: The higher speed and resolution of FD-OCT improved the repeatability of macular imaging compared with standard TD-OCT. Ganglion cell mapping and pattern analysis improved diagnostic power. The improved diagnostic power of macular GCC imaging is on par with, and complementary to, peripapillary NFL imaging. Macular imaging with FD-OCT is a useful method for glaucoma diagnosis and has potential for tracking glaucoma progression.
PMCID:2787911
PMID: 19744726
ISSN: 1549-4713
CID: 1885752

Scan quality effect on glaucoma discrimination by glaucoma imaging devices

Sung, K R; Wollstein, G; Schuman, J S; Bilonick, R A; Ishikawa, H; Townsend, K A; Kagemann, L; Gabriele, M L
AIM: To evaluate, within ocular imaging scans of acceptable quality as determined by manufacturers' guidelines, the effects of image quality on glaucoma discrimination capabilities. METHODS: One hundred and four healthy and 75 glaucomatous eyes from the Advanced Imaging in Glaucoma Study (AIGS) were imaged with GDx-VCC, HRT II and StratusOCT. Quality score (QS>/=8), pixel standard deviation (SD/=5) were used as quality parameter cut-offs, respectively. GDx nerve fibre indicator (NFI) and HRT Moorfields regression analysis (MRA) classifications and OCT mean retinal nerve fibre layer (RNFL) thickness were used as the discriminatory parameters. Logistic regression models were used to model the dichotomous clinical classification (healthy vs glaucoma) as a function of image-quality parameters and discriminatory parameters. RESULTS: Quality parameter covariates were statistically non-significant for GDx and HRT but had an inverse effect on OCT in predicting disease (a higher SS had a lower probability of glaucoma). Age was a significant covariate for GDx and HRT, but not OCT, while ethnicity and interaction between the image quality and the institute where scans were acquired were significant covariates in the OCT models. CONCLUSION: Scan quality within the range recommended as acceptable by the manufacturer of each imaging device does not affect the glaucoma discriminating ability of GDx or HRT but does affect Stratus OCT glaucoma discrimination.
PMCID:2917916
PMID: 19692363
ISSN: 1468-2079
CID: 1892382

Optical coherence tomography algorithm failure to detect nerve fibre layer defects: report of two cases [Case Report]

Pantcheva, M B; Wollstein, G; Ishikawa, H; Noecker, R J; Schuman, J S
PMCID:2918429
PMID: 19704038
ISSN: 1468-2079
CID: 1892512

Retinal nerve fibre layer thickness measurement reproducibility improved with spectral domain optical coherence tomography

Kim, J S; Ishikawa, H; Sung, K R; Xu, J; Wollstein, G; Bilonick, R A; Gabriele, M L; Kagemann, L; Duker, J S; Fujimoto, J G; Schuman, J S
BACKGROUND/AIMS: To investigate retinal nerve fibre layer (RNFL) thickness measurement reproducibility using conventional time-domain optical coherence tomography (TD-OCT) and spectral-domain OCT (SD-OCT), and to evaluate two methods defining the optic nerve head (ONH) centring: Centred Each Time (CET) vs Centred Once (CO), in terms of RNFL thickness measurement variability on SD-OCT. METHODS: Twenty-seven eyes (14 healthy subjects) had three circumpapillary scans with TD-OCT and three raster scans (three-dimensional or 3D image data) around ONH with SD-OCT. SD-OCT images were analysed in two ways: (1) CET: ONH centre was defined on each image separately and (2) CO: ONH centre was defined on one image and exported to other images after scan registration. After defining the ONH centre, a 3.4 mm diameter virtual circular OCT was resampled on SD-OCT images to mimic the conventional circumpapillary RNFL thickness measurements taken with TD-OCT. RESULTS: CET and CO showed statistically significantly better reproducibility than TD-OCT except for 11:00 with CET. CET and CO methods showed similar reproducibility. CONCLUSIONS: SD-OCT 3D cube data generally showed better RNFL measurement reproducibility than TD-OCT. The choice of ONH centring methods did not affect RNFL measurement reproducibility.
PMCID:2861342
PMID: 19429591
ISSN: 1468-2079
CID: 1892372

Effects of age on optical coherence tomography measurements of healthy retinal nerve fiber layer, macula, and optic nerve head

Sung, Kyung Rim; Wollstein, Gadi; Bilonick, Richard A; Townsend, Kelly A; Ishikawa, Hiroshi; Kagemann, Larry; Noecker, Robert J; Fujimoto, James G; Schuman, Joel S
PURPOSE: To determine the effects of age on global and sectoral peripapillary retinal nerve fiber layer (RNFL), macular thicknesses, and optic nerve head (ONH) parameters in healthy subjects using optical coherence tomography (OCT). DESIGN: Retrospective, cross-sectional observational study. PARTICIPANTS: A total of 226 eyes from 124 healthy subjects were included. METHODS: Healthy subjects were scanned using the Fast RNFL, Fast Macula, and Fast ONH scan patterns on a Stratus OCT (Carl Zeiss Meditec, Dublin, CA). All global and sectoral RNFL and macular parameters and global ONH parameters were modeled in terms of age using linear mixed effects models. Normalized slopes were also calculated by dividing the slopes by the mean value of the OCT parameter for interparameter comparison. MAIN OUTCOME MEASURES: Slope of each OCT parameter across age. RESULTS: All global and sectoral RNFL thickness parameters statistically significantly decreased with increasing age, except for the temporal quadrant and clock hours 8 to 10, which were not statistically different from a slope of zero. Highest absolute slopes were in the inferior and superior quadrant RNFL and clock hour 1 (superior nasal). Normalized slopes showed a similar rate in all sectors except for the temporal clock hours (8-10). All macular thickness parameters statistically significantly decreased with increasing age, except for the central fovea sector, which had a slight positive slope that was not statistically significant. The nasal outer sector had the greatest absolute slope. Normalized macular slope in the outer ring was similar to the normalized slopes in the RNFL. Normalized inner ring had shallower slope than the outer ring with a similar rate in all quadrants. Disc area remained nearly constant across the ages, but cup area increased and rim area decreased with age, both of which were statistically significant. CONCLUSIONS: Global and regional changes caused by the effects of age on RNFL, macula, and ONH OCT measurements should be considered when assessing eyes over time. FINANCIAL DISCLOSURE(S): Proprietary or commercial disclosure may be found after the references.
PMCID:2747246
PMID: 19376593
ISSN: 1549-4713
CID: 1885772

Visualization of 3-D high speed ultrahigh resolution optical coherence tomographic data identifies structures visible in 2D frames

Kagemann, Larry; Ishikawa, Hiroshi; Wollstein, Gadi; Gabriele, Michelle; Schuman, Joel S
Optical coherence tomography has allowed unprecedented visualization of ocular structures, but the identity of some visible objects within slices remains unknown. This study reconstructs a number of those objects in 3D space, allowing their identification by observation of their 3D morphology. In the case mottling deep within image slices through the optic disc, C-mode imaging provided visualization of the appearance and distribution of laminar pores. In the case of white spots and streaks sometimes observed in image slices through the cornea, C-mode imaging contoured to the path of those white spots allowed their visual identification as nerves extending radially into the cornea from the limbus. White spots observed in ultra-high resolution retinal image slices were identified as blood within retinal capillaries. C-mode contour-corrected imaging of three dimensional structures provided the identification of previously unidentified structures visible in cross-sectional image slices.
PMCID:2913867
PMID: 19259256
ISSN: 1094-4087
CID: 1885792

Three-dimensional optical coherence tomography (3D-OCT) image enhancement with segmentation-free contour modeling C-mode

Ishikawa, Hiroshi; Kim, Jongsick; Friberg, Thomas R; Wollstein, Gadi; Kagemann, Larry; Gabriele, Michelle L; Townsend, Kelly A; Sung, Kyung R; Duker, Jay S; Fujimoto, James G; Schuman, Joel S
PURPOSE: To develop a semiautomated method to visualize structures of interest (SoIs) along their contour within three-dimensional, spectral domain optical coherence tomography (3D SD-OCT) data, without the need for segmentation. METHODS: With the use of two SD-OCT devices, the authors obtained 3D SD-OCT data within 6 x 6 x 1.4-mm and 6 x 6 x 2-mm volumes, respectively, centered on the fovea in healthy eyes and in eyes with retinal pathology. C-mode images were generated by sampling a variable thickness plane semiautomatically modeled to fit the contour of the SoI. Unlike published and commercialized methods, this method did not require retinal layer segmentation, which is known to fail frequently in the presence of retinal pathology. Four SoIs were visualized for healthy eyes: striation of retinal nerve fiber (RNF), retinal capillary network (RCN), choroidal capillary network (CCN), and major choroidal vasculature (CV). Various SoIs were visualized for eyes with retinal pathology. RESULTS: Seven healthy eyes and seven eyes with retinal pathology (cystoid macular edema, central serous retinopathy, vitreoretinal traction, and age-related macular degeneration) were imaged. CCN and CV were successfully visualized in all eyes, whereas RNF and RCN were visualized in all healthy eyes and in 42.8% of eyes with pathologies. Various SoIs were successfully visualized in all eyes with retinal pathology. CONCLUSIONS: The proposed C-mode contour modeling may provide clinically useful images of SoIs even in eyes with severe pathologic changes in which segmentation algorithms fail.
PMCID:2743146
PMID: 18952923
ISSN: 0146-0404
CID: 1885812