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41


Compressed sensing acceleration of biexponential 3D-T1ρ relaxation mapping of knee cartilage

Zibetti, Marceo V W; Sharafi, Azadeh; Otazo, Ricardo; Regatte, Ravinder R
PURPOSE/OBJECTIVE:parameters (short and long relaxation times and corresponding fractions) comparable to fully sampled scans. METHODS:parameter estimation was also tested. RESULTS:Most CS methods performed satisfactorily for an acceleration factor (AF) of 2, with relative median normalized absolute deviation (MNAD) around 10%. Some sparsifying transforms, such as low rank with spatial finite difference (L + S SFD), spatiotemporal finite difference (STFD), and exponential dictionaries (EXP) significantly improved this performance, reaching MNAD below 15% with AF up to 10, when spatial filtering was used. CONCLUSION/CONCLUSIONS:mapping of knee cartilage with CS is feasible. The best results were obtained by STFD, EXP, and L + S SFD regularizers combined with spatial prefiltering. These 3 CS methods performed satisfactorily on synthetic phantom as well as in vivo knee cartilage for AFs up to 10, with median error below 15%.
PMID: 30230588
ISSN: 1522-2594
CID: 3301742

Volumetric multicomponent T-1 rho relaxation mapping of the human liver under free breathing at 3T

Sharafi, Azadeh; Baboli, Rahman; Zibetti, Marcelo; Shanbhogue, Krishna; Olsen, Sonja; Block, Tobias; Chandarana, Hersh; Regatte, Ravinder
ISI:000496286600001
ISSN: 0740-3194
CID: 4221632

The discrete Fourier transform for golden angle linogram sampling

Helou, Elias S.; Zibetti, Marcelo V. W.; Axel, Leon; Block, Kai Tobias; Regatte, Ravinder R.; Herman, Gabor T.
ISI:000499910200001
ISSN: 0266-5611
CID: 4228192

Sparse Ultrasound Imaging via Manifold Low-Rank Approximation and Non-Convex Greedy Pursuit

Rigo Passarin, Thiago Alberto; Wüst Zibetti, Marcelo Victor; Rodrigues Pipa, Daniel
Model-based image reconstruction has improved contrast and spatial resolution in imaging applications such as magnetic resonance imaging and emission computed tomography. However, these methods have not succeeded in pulse-echo applications like ultrasound imaging due to the typical assumption of a finite grid of possible scatterer locations in a medium⁻an assumption that does not reflect the continuous nature of real world objects and creates a problem known as off-grid deviation. To cope with this problem, we present a method of dictionary expansion and constrained reconstruction that approximates the continuous manifold of all possible scatterer locations within a region of interest. The expanded dictionary is created using a highly coherent sampling of the region of interest, followed by a rank reduction procedure. We develop a greedy algorithm, based on the Orthogonal Matching Pursuit, that uses a correlation-based non-convex constraint set that allows for the division of the region of interest into cells of any size. To evaluate the performance of the method, we present results of two-dimensional ultrasound imaging with simulated data in a nondestructive testing application. Our method succeeds in the reconstructions of sparse images from noisy measurements, providing higher accuracy than previous approaches based on regular discrete models.
PMCID:6308998
PMID: 30477106
ISSN: 1424-8220
CID: 5046792

Rapid compositional mapping of knee cartilage with compressed sensing MRI

Zibetti, Marcelo V W; Baboli, Rahman; Chang, Gregory; Otazo, Ricardo; Regatte, Ravinder R
More than a decade after the introduction of compressed sensing (CS) in MRI, researchers are still working on ways to translate it into different research and clinical applications. The greatest advantage of CS in MRI is the reduced amount of k-space data needed to reconstruct images, which can be exploited to reduce scan time or to improve spatial resolution and volumetric coverage. Efficient data acquisition using CS is extremely important for compositional mapping of the musculoskeletal system in general and knee cartilage mapping techniques in particular. High-resolution quantitative information about tissue biochemical composition could be obtained in just a few minutes using CS MRI. However, in order to make this goal a reality, some issues still need to be addressed. In this article we review the current state of the art of CS methods for rapid compositional mapping of knee cartilage. Specifically, data acquisition strategies, image reconstruction algorithms, and data fitting models are discussed. Different CS studies for T2 and T1ρ mapping of knee cartilage are reviewed, with illustrative results. Future directions, opportunities, and challenges of rapid compositional mapping techniques are also discussed.
PMID: 30295344
ISSN: 1522-2586
CID: 3334842

Accelerating 3D-T1ρmapping of cartilage using compressed sensing with different sparse and low rank models

Zibetti, Marcelo V W; Sharafi, Azadeh; Otazo, Ricardo; Regatte, Ravinder R
PURPOSE/OBJECTIVE:relaxation times. METHODS:parameter estimation was also tested. Synthetic phantom (n = 6) and in vivo human knee cartilage datasets (n = 7) were included. RESULTS:fitting. CONCLUSION/CONCLUSIONS:error of 6.5%.
PMCID:6097944
PMID: 29479738
ISSN: 1522-2594
CID: 2965802

Compressed sensing acceleration of biexponential 3D-T1rho relaxation mapping of knee cartilage

Zibetti, M V W; Sharafi, A; Otazo, R; Regatte, R R
Purpose: Use compressed sensing (CS) for 3D biexponential spin-lattice relaxation time in the rotating frame (T1rho) mapping of knee cartilage, reducing the total scan time and maintaining the quality of estimated biexponential T1rho parameters (short and long relaxation times and corresponding fractions) comparable to fully sampled scans. Methods: Fully sampled 3D-T1rho-weighted data sets were retrospectively undersampled by factors 2-10. CS reconstruction using 12 different sparsifying transforms were compared for biexponential T1rho-mapping of knee cartilage, including temporal and spatial wavelets and finite differences, dictionary from principal component analysis (PCA), k-means singular value decomposition (K-SVD), exponential decay models, and also low rank and low rank plus sparse models. Synthetic phantom (N = 6) and in vivo human knee cartilage data sets (N = 7) were included in the experiments. Spatial filtering before biexponential T1rho parameter estimation was also tested. Results: Most CS methods performed satisfactorily for an acceleration factor (AF) of 2, with relative median normalized absolute deviation (MNAD) around 10%. Some sparsifying transforms, such as low rank with spatial finite difference (L + S SFD), spatiotemporal finite difference (STFD), and exponential dictionaries (EXP) significantly improved this performance, reaching MNAD below 15% with AF up to 10, when spatial filtering was used. Conclusion: Accelerating biexponential 3D-T1rho mapping of knee cartilage with CS is feasible. The best results were obtained by STFD, EXP, and L + S SFD regularizers combined with spatial prefiltering. These 3 CS methods performed satisfactorily on synthetic phantom as well as in vivo knee cartilage for AFs up to 10, with median error below 15%.
EMBASE:623963118
ISSN: 0740-3194
CID: 3316832

Accelerating Overrelaxed and Monotone Fast Iterative Shrinkage-Thresholding Algorithms With Line Search for Sparse Reconstructions

Zibetti, Marcelo V W; Helou, Elias S; Pipa, Daniel R
Recently, specially crafted unidimensional optimization has been successfully used as line search to accelerate the overrelaxed and monotone fast iterative shrinkage-threshold algorithm (OMFISTA) for computed tomography. In this paper, we extend the use of fast line search to the monotone fast iterative shrinkage-threshold algorithm (MFISTA) and some of its variants. Line search can accelerate the FISTA family considering typical synthesis priors, such as the â„“1-norm of wavelet coefficients, as well as analysis priors, such as anisotropic total variation. This paper describes these new MFISTA and OMFISTA with line search, and also shows through numerical results that line search improves their performance for tomographic high-resolution image reconstruction.
PMID: 28463198
ISSN: 1941-0042
CID: 5046772

An Assessment of Iterative Reconstruction Methods for Sparse Ultrasound Imaging

Valente, Solivan A; Zibetti, Marcelo V W; Pipa, Daniel R; Maia, Joaquim M; Schneider, Fabio K
Ultrasonic image reconstruction using inverse problems has recently appeared as an alternative to enhance ultrasound imaging over beamforming methods. This approach depends on the accuracy of the acquisition model used to represent transducers, reflectivity, and medium physics. Iterative methods, well known in general sparse signal reconstruction, are also suited for imaging. In this paper, a discrete acquisition model is assessed by solving a linear system of equations by an â„“ 1 -regularized least-squares minimization, where the solution sparsity may be adjusted as desired. The paper surveys 11 variants of four well-known algorithms for sparse reconstruction, and assesses their optimization parameters with the goal of finding the best approach for iterative ultrasound imaging. The strategy for the model evaluation consists of using two distinct datasets. We first generate data from a synthetic phantom that mimics real targets inside a professional ultrasound phantom device. This dataset is contaminated with Gaussian noise with an estimated SNR, and all methods are assessed by their resulting images and performances. The model and methods are then assessed with real data collected by a research ultrasound platform when scanning the same phantom device, and results are compared with beamforming. A distinct real dataset is finally used to further validate the proposed modeling. Although high computational effort is required by iterative methods, results show that the discrete model may lead to images closer to ground-truth than traditional beamforming. However, computing capabilities of current platforms need to evolve before frame rates currently delivered by ultrasound equipments are achievable.
PMCID:5375819
PMID: 28282862
ISSN: 1424-8220
CID: 5046762

A sparse reconstruction algorithm for ultrasonic images in nondestructive testing

Guarneri, Giovanni Alfredo; Pipa, Daniel Rodrigues; Neves Junior, Flávio; de Arruda, Lúcia Valéria Ramos; Zibetti, Marcelo Victor Wüst
Ultrasound imaging systems (UIS) are essential tools in nondestructive testing (NDT). In general, the quality of images depends on two factors: system hardware features and image reconstruction algorithms. This paper presents a new image reconstruction algorithm for ultrasonic NDT. The algorithm reconstructs images from A-scan signals acquired by an ultrasonic imaging system with a monostatic transducer in pulse-echo configuration. It is based on regularized least squares using a l1 regularization norm. The method is tested to reconstruct an image of a point-like reflector, using both simulated and real data. The resolution of reconstructed image is compared with four traditional ultrasonic imaging reconstruction algorithms: B-scan, SAFT, ω-k SAFT and regularized least squares (RLS). The method demonstrates significant resolution improvement when compared with B-scan-about 91% using real data. The proposed scheme also outperforms traditional algorithms in terms of signal-to-noise ratio (SNR).
PMCID:4431274
PMID: 25905700
ISSN: 1424-8220
CID: 5046752