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92


Global analysis of A-to-I RNA editing reveals association with common disease variants

Franzén, Oscar; Ermel, Raili; Sukhavasi, Katyayani; Jain, Rajeev; Jain, Anamika; Betsholtz, Christer; Giannarelli, Chiara; Kovacic, Jason C; Ruusalepp, Arno; Skogsberg, Josefin; Hao, Ke; Schadt, Eric E; Björkegren, Johan L M
RNA editing modifies transcripts and may alter their regulation or function. In humans, the most common modification is adenosine to inosine (A-to-I). We examined the global characteristics of RNA editing in 4,301 human tissue samples. More than 1.6 million A-to-I edits were identified in 62% of all protein-coding transcripts. mRNA recoding was extremely rare; only 11 novel recoding sites were uncovered. Thirty single nucleotide polymorphisms from genome-wide association studies were associated with RNA editing; one that influences type 2 diabetes (rs2028299) was associated with editing in ARPIN. Twenty-five genes, including LRP11 and PLIN5, had editing sites that were associated with plasma lipid levels. Our findings provide new insights into the genetic regulation of RNA editing and establish a rich catalogue for further exploration of this process.
PMCID:5844249
PMID: 29527417
ISSN: 2167-8359
CID: 4844192

Physical Activity, Immune System, and the Microbiome in Cardiovascular Disease

Fernandez, Dawn M; Clemente, Jose C; Giannarelli, Chiara
Cardiovascular health is a primary research focus, as it is a leading contributor to mortality and morbidity worldwide, and is prohibitively costly for healthcare. Atherosclerosis, the main driver of cardiovascular disease, is now recognized as an inflammatory disorder. Physical activity (PA) may have a more important role in cardiovascular health than previously expected. This review overviews the contribution of PA to cardiovascular health, the inflammatory role of atherosclerosis, and the emerging evidence of the microbiome as a regulator of inflammation.
PMCID:6036301
PMID: 30013482
ISSN: 1664-042x
CID: 4844202

Child Health Promotion in Underserved Communities: Primary Results From the Cluster Randomized FAMILIA Trial [Meeting Abstract]

Fernandez-Jimenez, Rodrigo; Jaslow, Risa; Bansilal, Sameer; Santana, Maribel; Diaz-Munoz, Raquel; Trabal, Giselle; Latina, Jacqueline; Soto, Ana, V; Vedanthan, Rajesh; Giannarelli, Chiara; Kovacic, Jason; Bagiella, Emilia; Kasarskis, Andrew; Fayad, Zahi; Hajjar, Roger J.; Fuster, Valentin
ISI:000528619406439
ISSN: 0009-7322
CID: 4844562

Single Cell Analysis of Human Atherosclerotic Plaques Identifies Heterogeneity in Macrophage Populations [Meeting Abstract]

Fernandez, Dawn M.; Rahman, Adeeb; Chudnovskiy, Aleksey; Amadori, Letizia; Fernandez, Nicolas; Faries, Christopher; Pina, Christian; Moss, Noah; Kim-Schulze, Seunghee; Faries, Peter; Mocco, J.; Merad, Miriam; Fisher, Edward; Giannarelli, Chiara
ISI:000528619406300
ISSN: 0009-7322
CID: 4844552

Translational Systems Genetics, Electronic Medical Record Analysis, and Molecular Imaging Reveal That the Antidepressant Trazodone Reduces Atherosclerosis as Well as Statins: Drug Discovery by Repurposing of Proven Safe Drugs [Meeting Abstract]

Johnson, Kipp W.; Narula, Jagat; Glicksberg, Benjamin S.; Shameer, Khader; Chaudhry, Farhan; Yahi, Alexandre; Readhead, Ben; Khan, Nayaab S.; Amadori, Letizia; Becker, Christine; Divaraniya, Aparna A.; Smith, Milo R.; Li, Li; Vengrenyuk, Yuliya; McCauley, Benjamin; Kaji, Deepak; Stark, David; Pak, Koon Yan; Gray, Brian; Baber, Usman; Tatonetti, Nick; Butte, Atul J.; Petrov, Artiom; Narula, Navneet; Giannarelli, Chiara; Sharma, Samin K.; Dudley, Joel T.; Kini, Annapoorna
ISI:000528619400128
ISSN: 0009-7322
CID: 4844542

Rationale and Design of Family-Based Approach in a Minority Community Integrating Systems-Biology for Promotion of Health (FAMILIA)

Bansilal, Sameer; Vedanthan, Rajesh; Kovacic, Jason C; Soto, Ana Victoria; Latina, Jacqueline; Björkegren, Johan L M; Jaslow, Risa; Santana, Maribel; Sartori, Samantha; Giannarelli, Chiara; Mani, Venkatesh; Hajjar, Roger; Schadt, Eric; Kasarskis, Andrew; Fayad, Zahi A; Fuster, Valentin
BACKGROUND:The 2020 American Heart Association Impact Goal aims to improve cardiovascular health of all Americans by 20% while reducing deaths from cardiovascular disease and stroke by 20%. A large step toward this goal would be to better understand and take advantage of the significant intersection between behavior and biology across the entire life-span. In the proposed FAMILIA studies, we aim to directly address this major knowledge and clinical health gap by implementing an integrated family-centric health promotion intervention and focusing on the intersection of environment and behavior, while understanding the genetic and biologic basis of cardiovascular disease. METHODS:We plan to recruit 600 preschool children and their 600 parents or caregivers from 12-15 Head Start schools in Harlem, NY, and perform a 2:1 (2 intervention/1 control) cluster randomization of the schools. The preschool children will receive our intensive 37-hour educational program as the intervention for 4 months. For the adults, those in the "intervention" group will be randomly assigned to 1 of 2 intervention programs: an "individual-focused" or "peer-to-peer based." The primary outcome in children will be a composite score of knowledge (K), attitudes (A), habits (H), related to body mass index Z score (B), exercise (E), and alimentation (A) (KAH-BEA), using questionnaires and anthropometric measurements. For adults, the primary outcome will be a composite score for behaviors/outcomes related to blood pressure, exercise, weight, alimentation (diet) and tobacco (smoking; Fuster-BEWAT score). Saliva will be collected from the children for SNP genotyping, and blood will be collected from adults for RNA sequencing to identify network models and predictors of primary prevention outcomes. CONCLUSION/CONCLUSIONS:The FAMILIA studies seek to demonstrate that targeting a younger age group (3-5 years) and using a family-based approach may be a critical strategy in promoting cardiovascular health across the life-span.
PMID: 28454800
ISSN: 1097-6744
CID: 3240162

Susceptibility to chronic social stress increases plaque progression, vulnerability and platelet activation [Letter]

Giannarelli, Chiara; Rodriguez, David T; Zafar, M Urooj; Christoffel, Daniel; Vialou, Vincent; Peña, Catherine; Badimon, Ana; Hodes, Georgia F; Mury, Pauline; Rabkin, Jacklyn; Alique, Matilde; Villa, Giulia; Argmann, Carmen; Nestler, Eric J; Russo, Scott J; Badimon, Juan J
PMCID:5490439
PMID: 28078352
ISSN: 2567-689x
CID: 4844182

Carotid and aortic stiffness in essential hypertension and their relation with target organ damage: the CATOD study

Bruno, Rosa Maria; Cartoni, Giulia; Stea, Francesco; Armenia, Sabina; Bianchini, Elisabetta; Buralli, Simona; Giannarelli, Chiara; Taddei, Stefano; Ghiadoni, Lorenzo
OBJECTIVE:The objective of the study is to investigate in the hypertensive population the possible differential association between increased aortic and/or carotid stiffness and organ damage in multiple districts, such as the kidney, the vessels, and the heart. METHODS:In 314 essential hypertensive patients, carotid-femoral pulse wave velocity (cfPWV, by applanation tonometry) and carotid stiffness (from ultrasound images analysis), together with left ventricular hypertrophy, carotid intima-media thickness, urinary albumin-creatinin ratio, and glomerular filtration rate were measured. Increased cfPWV and carotid stiffness were defined according to either international reference values or the 90th percentile of a local control group (110 age and sex-matched healthy individuals). RESULTS:When considering the 90th percentile of a local control group, increased cfPWV was associated with reduced glomerular filtration rate, either when carotid stiffness was increased [odds ratio (OR) 13.27 (confidence limits (CL) 95% 3.86-45.58)] or not [OR 7.39 (CL95% 2.25-24.28)], whereas increased carotid stiffness was associated with left ventricular hypertrophy, either when cfPWV was increased [OR 2.86 (CL95% 1.15-7.09)] or not [OR 2.81 (CL95% 1.13-6.97)]. No association between increased cfPWV or carotid stiffness and target organ damage was found when cutoffs obtained by international reference values were used. The concomitance of both increased cfPWV and carotid stiffness did not have an additive effect on organ damage. CONCLUSION:Aortic and carotid stiffness are differentially associated with target organ damage in hypertensive patients. Regional arterial stiffness as assessed by cfPWV is associated with renal organ damage and local carotid stiffness with cardiac organ damage.
PMID: 27841779
ISSN: 1473-5598
CID: 4844172

Abstract 185: Genome Editing of Isogenic Human Induced Pluripotent Stem Cells Allows for Functional and Transcriptomic Insights Into Hereditary Dilated Cardiomyopathy Caused by Phospholamban Mutations [Meeting Abstract]

Ceholski, Delaine K.; Turnbull, Irene C.; Koplev, Simon; Kong Chi-Wing; Stillitano, Francesca; Nonnenmacher, Mathieu; Haghighi, Kobra; Gorski, Przemyslaw A.; Ninette, Cohen; Kolokathis, Fotis; Kremastinos, Dimitrios T.; Babu, Arvind; Li, Ronald A.; Giannarelli, Chiara; Karakikes, Ioannis; Kranias, Evangelia G.; Costa, Kevin D.; Hajjar, Roger J.
ISI:000520552700144
ISSN: 0009-7330
CID: 4844532

HYPOXIA-INDUCIBLE FACTOR-1 alpha REGULATES MIGRATION, PROLIFERATION AND ANGIOGENESIS IN REPLICATIVE ENDOTHELIAL SENESCENCE INDEPENDENTLY OF MICRORNA-126 EXPRESSION [Meeting Abstract]

Alique, Matilde; Bodega, Guillermo; Giannarelli, Chiara; Bohorquez, Lourdes; Corchete, Elena; Garcia-Menendez, Estefanya; De Sequera, Patricia; Marques, Maria; Albalate, Marta; Perez-Garcia, Rafael; Portoles, Jose; Ramirez, Rafael
ISI:000469797102224
ISSN: 0931-0509
CID: 4844462