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Three-dimensional MR Cholangiopancreatography in a Breath Hold with Sparsity-based Reconstruction of Highly Undersampled Data
Chandarana, Hersh; Doshi, Ankur M; Shanbhogue, Alampady; Babb, James S; Bruno, Mary T; Zhao, Tiejun; Raithel, Esther; Zenge, Michael O; Li, Guobin; Otazo, Ricardo
Purpose To develop a three-dimensional breath-hold (BH) magnetic resonance (MR) cholangiopancreatographic protocol with sampling perfection with application-optimized contrast using different flip-angle evolutions (SPACE) acquisition and sparsity-based iterative reconstruction (SPARSE) of prospectively sampled 5% k-space data and to compare the results with conventional respiratory-triggered (RT) acquisition. Materials and Methods This HIPAA-compliant prospective study was institutional review board approved. Twenty-nine patients underwent conventional RT SPACE and BH-accelerated SPACE acquisition with 5% k-space sampling at 3 T. Spatial resolution and other parameters were matched when possible. BH SPACE images were reconstructed by enforcing joint multicoil sparsity in the wavelet domain (SPARSE-SPACE). Two board-certified radiologists independently evaluated BH SPARSE-SPACE and RT SPACE images for image quality parameters in the pancreatic duct and common bile duct by using a five-point scale. The Wilcoxon signed-rank test was used to compare BH SPARSE-SPACE and RT SPACE images. Results Acquisition time for BH SPARSE-SPACE was 20 seconds, which was significantly (P < .001) shorter than that for RT SPACE (mean +/- standard deviation, 338.8 sec +/- 69.1). Overall image quality scores were higher for BH SPARSE-SPACE than for RT SPACE images for both readers for the proximal, middle, and distal pancreatic duct, but the difference was not statistically significant (P > .05). For reader 1, distal common bile duct scores were significantly higher with BH SPARSE-SPACE acquisition (P = .036). More patients had acceptable or better overall image quality (scores >/= 3) with BH SPARSE-SPACE than with RT SPACE acquisition, respectively, for the proximal (23 of 29 [79%] vs 22 of 29 [76%]), middle (22 of 29 [76%] vs 18 of 29 [62%]), and distal (20 of 29 [69%] vs 13 of 29 [45%]) pancreatic duct and the proximal (25 of 28 [89%] vs 22 of 28 [79%]) and distal (25 of 28 [89%] vs 24 of 28 [86%]) common bile duct. Conclusion BH SPARSE-SPACE showed similar or superior image quality for the pancreatic and common duct compared with that of RT SPACE despite 17-fold shorter acquisition time. (c) RSNA, 2016.
PMCID:4949145
PMID: 26982678
ISSN: 1527-1315
CID: 2031992
Cardiac function analysis with cardiorespiratory-synchronized CMR [Meeting Abstract]
Tautz, L; Feng, L; Otazo, R; Hennemuth, A; Axel, L
Background: Conventional cine MRI provides data on the variation of cardiac dimensions across the cardiac cycle; cardiac function analysis primarily focuses on the difference between end-diastolic (ED) and endsystolic (ES) dimensions of the left and right ventricles (LV and RV). With cardiorespiratory-synchronized (CRS) CMR, there is an additional effective dimension of information available, related to the effect of the respiratory cycle phase on cardiac dimensions. However, there are currently no established ways to analyze this potentially useful additional physiological data. We have developed a set of tools for the functional analysis of CRS CMR, particularly for the study of the respiratory effects on LV-RV interaction, and derived some initial normative values for the results. Methods: We have developed a set of interactive CMR function analysis programs. Images from CRS CMR are organized in a two-dimensional matrix, sorted by cardiac and respiratory cycle phases. The user can interactively position an analysis line across the ventricles in a representative image; this line can then be automatically tracked across the other cardiac and respiratory phases. The intensity profile along the line is then used to automatically track the corresponding positions of the edges of the LV and RV free walls and the interventricular septum (IVS). A variety of absolute and normalized variables can be derived from these varying positions, including ED and ES dimensions, and displayed as functional images over the cardiac and respiratory cycle dimensions. CRS CMR was performed with a sparsity-based method (XD-GRASP), using continuous acquisition of radial k-space samples with golden-angle increments and retrospective cardiac and respiratory phase sorting in reconstruction. An initial set of CRS CMR data from 9 normal subjects (age 28.33 +/- 5.85) was analyzed, as well as from 3 patients (age 40 +/- 9.66, one with HCM). Results: On visual inspection of the images, it is apparent that there is a clear shift in the relative position of the IVS over the respiratory cycle, to the left in inspiration and to the right in expiration, reflecting the LV-RV interaction; this is much more prominent near ED than ES. For the normal subjects, in midlevel short-axis views, the respiratory-related absolute shift in IVS position was 1.07-3.23 mm at ED and 0.69-2.14 mm at ES; corresponding values normalized to ED dimension were 2.65-7.08 pp and 1.99-5.18 pp. The ED-ES difference for the normalized shift ranges was -1.9-4.35 pp (median 1.35, first quartile 0.68). For the HCM patient, the difference between the shift ranges was 0.79 pp. Linear regression when plotting NCD against NEDD (reflecting the Frank-Starling relationship and giving an estimate of contractility) was 0.68 +/- 0.11 in the normal subjects. Conclusions: Novel physiologic data on LV-RV interaction can be derived from CRS CMR; this seems to show consistent ranges in normal subjects, and may provide useful information on disease-related changes in cardiac function. (Figure Presented)
EMBASE:72183348
ISSN: 1097-6647
CID: 1950592
Influence of temporal regularization and radial undersampling factor on compressed sensing reconstruction in dynamic contrast enhanced MRI of the breast
Kim, Sungheon G; Feng, Li; Grimm, Robert; Freed, Melanie; Block, Kai Tobias; Sodickson, Daniel K; Moy, Linda; Otazo, Ricardo
BACKGROUND: To evaluate the influence of temporal sparsity regularization and radial undersampling on compressed sensing reconstruction of dynamic contrast-enhanced (DCE) MRI, using the iterative Golden-angle RAdial Sparse Parallel (iGRASP) MRI technique in the setting of breast cancer evaluation. METHODS: DCE-MRI examinations of the breast (n = 7) were conducted using iGRASP at 3 Tesla. Images were reconstructed with five different radial undersampling schemes corresponding to temporal resolutions between 2 and 13.4 s/frame and with four different weights for temporal sparsity regularization (lambda = 0.1, 0.5, 2, and 6 times of noise level). Image similarity to time-averaged reference images was assessed by two breast radiologists and using quantitative metrics. Temporal similarity was measured in terms of wash-in slope and contrast kinetic model parameters. RESULTS: iGRASP images reconstructed with lambda = 2 and 5.1 s/frame had significantly (P < 0.05) higher similarity to time-averaged reference images than the images with other reconstruction parameters (mutual information (MI) >5%), in agreement with the assessment of two breast radiologists. Higher undersampling (temporal resolution < 5.1 s/frame) required stronger temporal sparsity regularization (lambda >/= 2) to remove streaking aliasing artifacts (MI > 23% between lambda = 2 and 0.5). The difference between the kinetic-model transfer rates of benign and malignant groups decreased as temporal resolution decreased (82% between 2 and 13.4 s/frame). CONCLUSION: This study demonstrates objective spatial and temporal similarity measures can be used to assess the influence of sparsity constraint and undersampling in compressed sensing DCE-MRI and also shows that the iGRASP method provides the flexibility of optimizing these reconstruction parameters in the postprocessing stage using the same acquired data. J. Magn. Reson. Imaging 2015.
PMCID:4666836
PMID: 26032976
ISSN: 1522-2586
CID: 1615322
XD-GRASP: Golden-angle radial MRI with reconstruction of extra motion-state dimensions using compressed sensing
Feng, Li; Axel, Leon; Chandarana, Hersh; Block, Kai Tobias; Sodickson, Daniel K; Otazo, Ricardo
PURPOSE: To develop a novel framework for free-breathing MRI called XD-GRASP, which sorts dynamic data into extra motion-state dimensions using the self-navigation properties of radial imaging and reconstructs the multidimensional dataset using compressed sensing. METHODS: Radial k-space data are continuously acquired using the golden-angle sampling scheme and sorted into multiple motion-states based on respiratory and/or cardiac motion signals derived directly from the data. The resulting undersampled multidimensional dataset is reconstructed using a compressed sensing approach that exploits sparsity along the new dynamic dimensions. The performance of XD-GRASP is demonstrated for free-breathing three-dimensional (3D) abdominal imaging, two-dimensional (2D) cardiac cine imaging and 3D dynamic contrast-enhanced (DCE) MRI of the liver, comparing against reconstructions without motion sorting in both healthy volunteers and patients. RESULTS: XD-GRASP separates respiratory motion from cardiac motion in cardiac imaging, and respiratory motion from contrast enhancement in liver DCE-MRI, which improves image quality and reduces motion-blurring artifacts. CONCLUSION: XD-GRASP represents a new use of sparsity for motion compensation and a novel way to handle motions in the context of a continuous acquisition paradigm. Instead of removing or correcting motion, extra motion-state dimensions are reconstructed, which improves image quality and also offers new physiological information of potential clinical value. Magn Reson Med, 2015. (c) 2015 Wiley Periodicals, Inc.
PMCID:4583338
PMID: 25809847
ISSN: 1522-2594
CID: 1514172
PET-MRF: One-step 6-minute multi-parametric PET-MR imaging using MR fingerprinting and multi-modality joint image reconstruction [Meeting Abstract]
Knoll, Florian; Cloos, Martijin; Koesters, Thomas; Zenge, Michael; Otazo, Ricardo; Sodickson, Daniel K
Purpose: Despite the extensive opportunities offered by current state-of-the-art PET-MR systems [1], their use is still far from routine clinical practice. While it is feasible to acquire PET data from a single bed position in about 5 minutes, collecting the clinically relevant variety of traditional MR contrasts requires substantially more time. This bottleneck formed by the traditional MR paradigm leads to a relatively inefficient use of the PET component and is particularly prohibitive for multiplebed-position PET protocols. This work proposes a one-step procedure that merges the MR fingerprinting (MRF) framework [2] with the PET acquisition, and employs a dedicated multi-modality reconstruction exploiting joint information among multiple contrast weightings to enable a 6 minute comprehensive PET-MR exam, which can provide the majority of clinical MR contrasts alongside quantitative parametric maps of the relaxation parameters (T1, T2) together with improved PET images. Theory & Methods: Although MRF is inherently robust against incoherent undersampling artifacts, there is a limit beyond which the final image quality will suffer. Instead of relaying purely on incoherence between undersampling artifacts and simulated signal evolutions (standard MRF reconstruction), we propose an extension of a recently proposed nonlinear joint multimodality reconstruction [3] to simultaneously reconstruct the series of MRF images and the PET image by enforcing joint sparsity, thereby reducing residual undersampling artifacts in MR while at the same time improving PET reconstruction quality. The joint MRF-PET reconstruction is performed by minimizing the …
ORIGINAL:0014704
ISSN: 1524-6965
CID: 4534542
The rapid imaging renaissance: sparser samples, denser dimensions, and glimmerings of a grand unified tomography [Meeting Abstract]
Sodickson, Daniel K; Feng, Li; Knoll, Florian; Cloos, Martijn; Ben-Eliezer, Noam; Axel, Leon; Chandarana, Hersh; Block, Tobias; Otazo, Ricardo
The task of imaging is to gather spatiotemporal information which can be organized into a coherent map. Tomographic imaging in particular involves the use of multiple projections, or other interactions of a probe (light, sound, etc.) with a body, in order to determine cross-sectional information. Though the probes and the corresponding imaging modalities may vary, and though the methodology of particular imaging approaches is in constant ferment, the conceptual underpinnings of tomographic imaging have in many ways remained fixed for many decades. Recent advances in applied mathematics, however, have begun to roil this intellectual landscape. The advent of compressed sensing, anticipated in various algorithms dating back many years but unleashed in full theoretical force in the last decade, has changed the way imagers have begun to think about data acquisition and image reconstruction. The power of incoherent sampling and sparsity-enforcing reconstruction has been demonstrated in various contexts and, when combined with other modern fast imaging techniques, has enabled unprecedented increases in imaging efficiency. Perhaps more importantly, however, such approaches have spurred a shift in perspective, prompting us to focus less on nominal data sufficiency than on information content. Beginning with examples from MRI, then proceeding through selected other modalities such as CT and PET, as well as multimodality combinations, this paper explores the potential of newly evolving acquisition and reconstruction paradigms to change the way we do imaging in the lab and in the clinic.
ISI:000355665600014
ISSN: 0277-786x
CID: 2061802
Rapid free-breathing dynamic contrast-enhanced MRI using motion-resolved compressed
Li Feng; Sodickson, D.K.; Otazo, R.
Compressed sensing is a powerful rapid imaging approach for Magnetic Resonance Imaging
INSPEC:15309544
ISSN: 1945-7928
CID: 1749622
Respiratory Motion-Resolved Compressed Sensing Reconstruction of Free-Breathing Radial Acquisition for Dynamic Liver Magnetic Resonance Imaging
Chandarana, Hersh; Feng, Li; Ream, Justin; Wang, Annie; Babb, James S; Block, Kai Tobias; Sodickson, Daniel K; Otazo, Ricardo
OBJECTIVE: This study aimed to demonstrate feasibility of free-breathing radial acquisition with respiratory motion-resolved compressed sensing reconstruction [extra-dimensional golden-angle radial sparse parallel imaging (XD-GRASP)] for multiphase dynamic gadolinium ethoxybenzyl diethylenetriamine pentaacetic acid (Gd-EOB-DTPA)-enhanced liver imaging, and to compare image quality to compressed sensing reconstruction with respiratory motion-averaging (GRASP) and prior conventional breath-held Cartesian-sampled data sets [BH volume interpolated breath-hold examination (VIBE)] in same patients. SUBJECTS AND METHODS: In this Health Insurance Portability and Accountability Act-compliant prospective study, 16 subjects underwent free-breathing continuous radial acquisition during Gd-EOB-DTPA injection and had prior BH-VIBE available. Acquired data were reconstructed using motion-averaging GRASP approach in which consecutive 84 spokes were grouped in each contrast-enhanced phase for a temporal resolution of approximately 14 seconds. Additionally, respiratory motion-resolved reconstruction was performed from the same k-space data by sorting each contrast-enhanced phase into multiple respiratory motion states using compressed sensing algorithm named XD-GRASP, which exploits sparsity along both the contrast-enhancement and respiratory-state dimensions.Contrast-enhanced dynamic multiphase XD-GRASP, GRASP, and BH-VIBE images were anonymized, pooled together in a random order, and presented to 2 board-certified radiologists for independent evaluation of image quality, with higher score indicating more optimal examination. RESULTS: The XD-GRASP reconstructions had significantly (all P < 0.05) higher overall image quality scores compared to GRASP for early arterial (reader 1: 4.3 +/- 0.6 vs 3.31 +/- 0.6; reader 2: 3.81 +/- 0.8 vs 3.38 +/- 0.9) and late arterial (reader 1: 4.5 +/- 0.6 vs 3.63 +/- 0.6; reader 2: 3.56 +/- 0.5 vs 2.88 +/- 0.7) phases of enhancement for both readers. The XD-GRASP also had higher overall image quality score in portal venous phase, which was significant for reader 1 (4.44 +/- 0.5 vs 3.75 +/- 0.8; P = 0.002). In addition, the XD-GRASP had higher overall image quality score compared to BH-VIBE for early (reader 1: 4.3 +/- 0.6 vs 3.88 +/- 0.6; reader 2: 3.81 +/- 0.8 vs 3.50 +/- 1.0) and late (reader 1: 4.5 +/- 0.6 vs 3.44 +/- 0.6; reader 2: 3.56 +/- 0.5 vs 2.94 +/- 0.9) arterial phases. CONCLUSION: Free-breathing motion-resolved XD-GRASP reconstructions provide diagnostic high-quality multiphase images in patients undergoing Gd-EOB-DTPA-enhanced liver examination.
PMCID:4598262
PMID: 26146869
ISSN: 1536-0210
CID: 1662582
Complex difference constrained compressed sensing reconstruction for accelerated PRF thermometry with application to MRI-induced RF heating
Cao, Zhipeng; Oh, Sukhoon; Otazo, Ricardo; Sica, Christopher T; Griswold, Mark A; Collins, Christopher M
PURPOSE: Introduce a novel compressed sensing reconstruction method to accelerate proton resonance frequency shift temperature imaging for MRI-induced radiofrequency heating evaluation. METHODS: A compressed sensing approach that exploits sparsity of the complex difference between postheating and baseline images is proposed to accelerate proton resonance frequency temperature mapping. The method exploits the intra-image and inter-image correlations to promote sparsity and remove shared aliasing artifacts. Validations were performed on simulations and retrospectively undersampled data acquired in ex vivo and in vivo studies by comparing performance with previously published techniques. RESULTS: The proposed complex difference constrained compressed sensing reconstruction method improved the reconstruction of smooth and local proton resonance frequency temperature change images compared to various available reconstruction methods in a simulation study, a retrospective study with heating of a human forearm in vivo, and a retrospective study with heating of a sample of beef ex vivo. CONCLUSION: Complex difference based compressed sensing with utilization of a fully sampled baseline image improves the reconstruction accuracy for accelerated proton resonance frequency thermometry. It can be used to improve the volumetric coverage and temporal resolution in evaluation of radiofrequency heating due to MRI, and may help facilitate and validate temperature-based methods for safety assurance. Magn Reson Med 73:1420-1431, 2015. (c) 2014 Wiley Periodicals, Inc.
PMCID:4205230
PMID: 24753099
ISSN: 1522-2594
CID: 1522922
A model-based reconstruction for undersampled radial spin-echo DTI with variational penalties on the diffusion tensor
Knoll, Florian; Raya, Jose G; Halloran, Rafael O; Baete, Steven; Sigmund, Eric; Bammer, Roland; Block, Tobias; Otazo, Ricardo; Sodickson, Daniel K
Radial spin-echo diffusion imaging allows motion-robust imaging of tissues with very low T2 values like articular cartilage with high spatial resolution and signal-to-noise ratio (SNR). However, in vivo measurements are challenging, due to the significantly slower data acquisition speed of spin-echo sequences and the less efficient k-space coverage of radial sampling, which raises the demand for accelerated protocols by means of undersampling. This work introduces a new reconstruction approach for undersampled diffusion-tensor imaging (DTI). A model-based reconstruction implicitly exploits redundancies in the diffusion-weighted images by reducing the number of unknowns in the optimization problem and compressed sensing is performed directly in the target quantitative domain by imposing a total variation (TV) constraint on the elements of the diffusion tensor. Experiments were performed for an anisotropic phantom and the knee and brain of healthy volunteers (three and two volunteers, respectively). Evaluation of the new approach was conducted by comparing the results with reconstructions performed with gridding, combined parallel imaging and compressed sensing and a recently proposed model-based approach. The experiments demonstrated improvements in terms of reduction of noise and streaking artifacts in the quantitative parameter maps, as well as a reduction of angular dispersion of the primary eigenvector when using the proposed method, without introducing systematic errors into the maps. This may enable an essential reduction of the acquisition time in radial spin-echo diffusion-tensor imaging without degrading parameter quantification and/or SNR
PMCID:4339452
PMID: 25594167
ISSN: 0952-3480
CID: 1436482