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A parametric meta-analysis
Yu, Chang; Zelterman, Daniel
In a meta-analysis, we assemble a sample of independent, nonidentically distributed p-values. The Fisher's combination procedure provides a chi-squared test of whether the p-values were sampled from the null uniform distribution. After rejecting the null uniform hypothesis, we are faced with the problem of how to combine the assembled p-values. We first derive a distribution for the p-values. The distribution is parameterized by the standardized mean difference (SMD) and the sample size. It includes the uniform as a special case. The maximum likelihood estimate (MLE) of the SMD can then be obtained from the independent, nonidentically distributed p-values. The MLE can be interpreted as a weighted average of the study-specific estimate of the effect size with a shrinkage. The method is broadly applicable to p-values obtained in the maximum likelihood framework. Simulation studies show that our method can effectively estimate the effect size with as few as 6 p-values in the meta-analyses. We also present a Bayes estimator for SMD and a method to account for publication bias. We demonstrate our methods on several meta-analyses that assess the potential benefits of citicoline for patients with memory disorders or patients recovering from ischemic stroke.
PMCID:6688941
PMID: 31206759
ISSN: 1097-0258
CID: 5161602
United States Pulmonary Hypertension Scientific Registry (USPHSR): rationale, design, and clinical implications
Elliott, C Gregory; Austin, Eric D; Badesch, David; Badlam, Jessica; Benza, Raymond L; Chung, Wendy K; Farber, Harrison W; Feldkircher, Kathy; Frost, Adaani E; Poms, Abby D; Lutz, Katie A; Pauciulo, Michael W; Yu, Chang; Nichols, William C
Diagnostic World Health Organization (WHO) Group 1 pulmonary arterial hypertension (PAH) and Diagnostic Group 1' pulmonary veno-occlusive disease (PVOD) and/or pulmonary capillary hemangiomatosis (PCH) are progressive and fatal disorders. Past registries provided important insights into these disorders, but did not include hormonal exposures or genomic data. The United States Pulmonary Hypertension Scientific Registry (USPHSR) will provide demographic, physiologic, anorexigen and hormone exposure, genomic, and survival data in the current therapeutic era for 499 patients diagnosed with PAH, PVOD, or PCH. The USPHSR also will explore the relationship between pharmacologic, non-pharmacologic, and dietary hormonal exposures and the increased risk for women to develop idiopathic or heritable PAH.
PMCID:6540712
PMID: 31099303
ISSN: 2045-8932
CID: 5162012
Human PAH is characterized by a pattern of lipid-related insulin resistance
Hemnes, Anna R; Luther, J Matthew; Rhodes, Christopher J; Burgess, Jason P; Carlson, James; Fan, Run; Fessel, Joshua P; Fortune, Niki; Gerszten, Robert E; Halliday, Stephen J; Hekmat, Rezzan; Howard, Luke; Newman, John H; Niswender, Kevin D; Pugh, Meredith E; Robbins, Ivan M; Sheng, Quanhu; Shibao, Cyndya A; Shyr, Yu; Sumner, Susan; Talati, Megha; Wharton, John; Wilkins, Martin R; Ye, Fei; Yu, Chang; West, James; Brittain, Evan L
BACKGROUND:Pulmonary arterial hypertension (PAH) is a deadly disease of the small pulmonary vasculature with an increased prevalence of insulin resistance (IR). Insulin regulates both glucose and lipid homeostasis. We sought to quantify glucose- and lipid-related IR in human PAH, testing the hypothesis that lipoprotein indices are more sensitive indices of IR in PAH. METHODS:Oral glucose tolerance testing in PAH patients and triglyceride-matched (TG-matched) controls and proteomic, metabolomics, and lipoprotein analyses were performed in PAH and controls. Results were validated in an external cohort and in explanted human PAH lungs. RESULTS:PAH patients were similarly glucose intolerant or IR by glucose homeostasis metrics compared with control patients when matched for the metabolic syndrome. Using the insulin-sensitive lipoprotein index, TG/HDL ratio, PAH patients were more commonly IR than controls. Proteomic and metabolomic analysis demonstrated separation between PAH and controls, driven by differences in lipid species. We observed a significant increase in long-chain acylcarnitines, phosphatidylcholines, insulin metabolism-related proteins, and in oxidized LDL receptor 1 (OLR1) in PAH plasma in both a discovery and validation cohort. PAH patients had higher lipoprotein axis-related IR and lipoprotein-based inflammation scores compared with controls. PAH patient lung tissue showed enhanced OLR1 immunostaining within plexiform lesions and oxidized LDL accumulation within macrophages. CONCLUSIONS:IR in PAH is characterized by alterations in lipid and lipoprotein homeostasis axes, manifest by elevated TG/HDL ratio, and elevated circulating medium- and long-chain acylcarnitines and lipoproteins. Oxidized LDL and its receptor OLR1 may play a role in a proinflammatory phenotype in PAH. FUNDING/BACKGROUND:NIH DK096994, HL060906, UL1 RR024975-01, UL1 TR000445-06, DK020593, P01 HL108800-01A1, and UL1 TR002243; American Heart Association 13FTF16070002.
PMCID:6485674
PMID: 30626738
ISSN: 2379-3708
CID: 5161632
ASSESSMENT OF PAIN, AGITATION, AND DELIRIUM PRACTICES IN A LARGE INTERNATIONAL COHORT [Meeting Abstract]
Stollings, Joanna; Owen, Gary; Rakhit, Shayan; Penuelas, Oscar; Wang, Li; Yu, Chang; Hosay, Morgan; Stewart, James; Frutos Vivar, Fernando; Esteban, Andres; Anzueto, Antonio; Patel, Mayur
ISI:000498593401210
ISSN: 0090-3493
CID: 5162402
Performance evaluation of propensity score methods for estimating average treatment effects with multi-level treatments
Nian, Hui; Yu, Chang; Ding, Juan; Wu, Huiyun; Dupont, William D; Brunwasser, Steve; Gebretsadik, Tebeb; Hartert, Tina V; Wu, Pingsheng
The propensity score (PS) method is widely used to estimate the average treatment effect (TE) in observational studies. However, it is generally confined to the binary treatment assignment. In an extension to the settings of a multi-level treatment, Imbens proposed a generalized propensity score which is the conditional probability of receiving a particular level of the treatment given pre-treatment variables. The average TE can then be estimated by conditioning solely on the generalized PS under the assumption of weak unconfounded-ness. In the present work, we adopted this approach and conducted extensive simulations to evaluate the performance of several methods using the generalized PS, including subclassification, matching, inverse probability of treatment weighting (IPTW), and covariate adjustment. Compared with other methods, IPTW had the preferred overall performance. We then applied these methods to a retrospective cohort study of 228,876 pregnant women. The impact of the exposure to different types of the antidepressant medications (no exposure, selective serotonin reuptake inhibitor (SSRI) only, non-SSRI only, and both) during pregnancy on several important infant outcomes (birth weight, gestation age, preterm labor, and respiratory distress) were assessed.
PMCID:6609155
PMID: 31274945
ISSN: 0266-4763
CID: 5161852
International Analgesia, Sedation, and Delirium Practices: a prospective cohort study
Owen, Gary D; Stollings, Joanna L; Rakhit, Shayan; Wang, Li; Yu, Chang; Hosay, Morgan A; Stewart, James W; Frutos-Vivar, Fernando; Peñuelas, Oscar; Esteban, Andres; Anzueto, Antonio R; Raymondos, Konstantinos; Rios, Fernando; Thille, Arnaud W; González, Marco; Du, Bin; Maggiore, Salvatore M; Matamis, Dimitrios; Abroug, Fekri; Amin, Pravin; Zeggwagh, Amine Ali; Patel, Mayur B
Background/UNASSIGNED:While understanding of critical illness and delirium continue to evolve, the impact on clinical practice is often unknown and delayed. Our purpose was to provide insight into practice changes by characterizing analgesia and sedation usage and occurrence of delirium in different years and international regions. Methods/UNASSIGNED:We performed a retrospective analysis of two multicenter, international, prospective cohort studies. Mechanically ventilated adults were followed for up to 28 days in 2010 and 2016. Proportion of days utilizing sedation, analgesia, and performance of a spontaneous awakening trial (SAT), and occurrence of delirium were described for each year and region and compared between years. Results/UNASSIGNED: < 0.001). Conclusions/UNASSIGNED:Analgesia and sedation practices varied widely across international regions and significantly changed over time. Opportunities for improvement in care include increasing delirium monitoring, performing SATs, and decreasing use of sedation, particularly benzodiazepines.
PMCID:6480848
PMID: 31049203
ISSN: 2052-0492
CID: 5162382
Magnesium status and supplementation influence vitamin D status and metabolism: results from a randomized trial
Dai, Qi; Zhu, Xiangzhu; Manson, JoAnn E; Song, Yiqing; Li, Xingnan; Franke, Adrian A; Costello, Rebecca B; Rosanoff, Andrea; Nian, Hui; Fan, Lei; Murff, Harvey; Ness, Reid M; Seidner, Douglas L; Yu, Chang; Shrubsole, Martha J
Background:Previous in vitro and in vivo studies indicate that enzymes that synthesize and metabolize vitamin D are magnesium dependent. Recent observational studies found that magnesium intake significantly interacted with vitamin D in relation to vitamin D status and risk of mortality. According to NHANES, 79% of US adults do not meet their Recommended Dietary Allowance of magnesium. Objectives:The aim of this study was to test the hypothesis that magnesium supplementation differentially affects vitamin D metabolism dependent on baseline 25-hydroxyvitamin D [25(OH)D] concentration. Methods:The study included 180 participants aged 40-85 y and is a National Cancer Institute independently funded ancillary study, nested within the Personalized Prevention of Colorectal Cancer Trial (PPCCT), which enrolled 250 participants. The PPCCT is a double-blind 2 × 2 factorial randomized controlled trial conducted in the Vanderbilt University Medical Center. Doses for both magnesium and placebo were customized based on baseline dietary intakes. Subjects were randomly assigned to treatments using a permuted-block randomization algorithm. Changes in plasma 25-hydroxyvitamin D3 [25(OH)D3], 25-hydroxyvitamin D2 [25(OH)D2], 1,25-dihydroxyvitamin D3, 1,25-dihydroxyvitamin D2, and 24,25-dihydroxyvitamin D3 [24,25(OH)2D3] were measured by liquid chromatography-mass spectrometry. Results:The relations between magnesium treatment and plasma concentrations of 25(OH)D3, 25(OH)D2, and 24,25(OH)2D3 were significantly different dependent on the baseline concentrations of 25(OH)D, and significant interactions persisted after Bonferroni corrections. Magnesium supplementation increased the 25(OH)D3 concentration when baseline 25(OH)D concentrations were close to 30 ng/mL, but decreased it when baseline 25(OH)D was higher (from ∼30 to 50 ng/mL). Magnesium treatment significantly affected 24,25(OH)2D3 concentration when baseline 25(OH)D concentration was 50 ng/mL but not 30 ng/mL. On the other hand, magnesium treatment increased 25(OH)D2 as baseline 25(OH)D increased. Conclusion:Our findings suggest that optimal magnesium status may be important for optimizing 25(OH)D status. This trial was registered at clinicaltrials.gov as NCT03265483.
PMID: 30541089
ISSN: 1938-3207
CID: 5161842
Associations of renal function with urinary excretion of metals: Evidence from NHANES 2003-2012
Jin, Rufeng; Zhu, Xiangzhu; Shrubsole, Martha J; Yu, Chang; Xia, Zhaolin; Dai, Qi
BACKGROUND:Urinary metals are considered measures of long-term exposures of metals, such as cadmium (Cd). Some studies indicate reduced renal function may affect the urinary excretion of several metals in general population making assessments difficult. OBJECTIVES:To examine whether reduced renal function is associated with reduced urinary excretion of 12 metals or their metabolites and, in turn, an underestimated measure of Cd in general population. METHODS:We conducted analyses using data from the National Health and Nutrition Examination Survey (NHANES) 2003-2012. Multiple linear regression models were used to examine the associations between urinary metal levels and estimated glomerular filtration rate (eGFR). Restricted cubic spline regression models were used to evaluate the nonlinearity. RESULTS:Urinary metal levels significantly increased (p < 0.001) with increasing eGFR, except for antimony (p = 0.172). Urinary levels of arsenic, dimethylarsonic acid, cobalt, molybdenum and tungsten increased linearly with eGFR, while Cd, lead, mercury, barium, cesium and thallium increased nonlinearly (p < 0.001) with eGFR. Based on a restricted cubic spline regression model, we found, corresponding to a fixed blood Cd adverse cutpoint of 5 μg/L, predicted urinary Cd cutpoints substantially varied from 0.78-1.21 μg/g for urinary Cd between those aged <40 years and who had chronic kidney disease and those aged 60 years or over with normal renal function, respectively. CONCLUSION:Reduced renal function is associated with reduced urinary metals; and associations are also observed across the eGFR range not just in the reduced range. Urinary abnormal cutpoints of metals are likely dependent on eGFR and age. The associations between urinary exposure of metals and disease risk are likely underestimated without considering the modifying effect of renal function.
PMID: 30442456
ISSN: 1873-6750
CID: 5162812
Endogenous bradykinin and B1-B5 during angiotensin-converting enzyme inhibitor-associated angioedema [Letter]
Hubers, Scott A; Kohm, Kevin; Wei, Shouzuo; Yu, Chang; Nian, Hui; Grabert, Ryan; Sexton, Daniel J; Brown, Nancy J
PMCID:6226317
PMID: 30036596
ISSN: 1097-6825
CID: 5161822
Aprepitant for the Treatment of Pruritus in Sézary Syndrome: A Randomized Crossover Clinical Trial [Letter]
Zic, John A; Straka, Brittany T; McGirt, Laura Y; Nian, Hui; Yu, Chang; Brown, Nancy J
PMCID:6233739
PMID: 30140912
ISSN: 2168-6084
CID: 5161832