Searched for: in-biosketch:yes
person:chakra01
A genetic map of human chromosome 11p
Buetow, K H; Chakravarti, A; Cole, S A
PMID: 3471656
ISSN: n/a
CID: 3974552
Cutaneous malignant melanoma and familial dysplastic nevi: evidence for autosomal dominance and pleiotropy
Bale, S J; Chakravarti, A; Greene, M H
Segregation of familial cutaneous melanoma has been shown to be compatible with autosomal dominant transmission with incomplete penetrance. However, the combined phenotype of melanoma and a known melanoma-precursor lesion, the dysplastic nevus (DN), has not previously been found to fit a Mendelian model of inheritance using complex segregation analysis. Employing a life-table and disease-free survival analysis approach, we estimated the lifetime incidence of melanoma in the sibs and offspring of DN-affected individuals to be 46%, consistent with a highly penetrant, autosomal dominant mode of inheritance. To further elucidate the relationship between the two traits, we conducted a linkage analysis between the melanoma locus and a hypothetical DN locus, and obtained a maximum lod score of 3.857 at theta = .08. Furthermore, all families giving evidence for linkage were in the coupling phase and the maximum likelihood estimate of theta was not significantly different from 0 (P = .1). This provides evidence that the DN and melanoma traits may represent pleiotropic effects of a single, highly penetrant gene behaving in an autosomal dominant manner.
PMCID:1684756
PMID: 3456198
ISSN: 0002-9297
CID: 3974542
Reduced recombination rate on chromosomes 21 that have undergone nondisjunction
Antonarakis, S E; Chakravarti, A; Warren, A C; Slaugenhaupt, S A; Wong, C; Halloran, S L; Metaxotou, C
PMID: 3034482
ISSN: 0091-7451
CID: 3974532
Evidence for increased recombination near the human insulin gene: implication for disease association studies
Chakravarti, A; Elbein, S C; Permutt, M A
Haplotypes for four new restriction site polymorphisms (detected by Rsa I, Taq I, HincII, and Sac I) and a previously identified DNA length polymorphism (5' FP), all at the insulin locus, have been studied in U.S. Blacks, African Blacks, Caucasians, and Pima Indians. Black populations are polymorphic for all five markers, whereas the other groups are polymorphic for Rsa I, Taq I, and 5' FP only. The data suggest that approximately equal to 1 in 550 base pairs is variant in this region. The polymorphisms, even though located within 20 kilobases, display low levels of nonrandom association. Population genetic analysis suggests that recombination within this 20-kilobase segment occurs 24 times more frequently than expected if crossing-over occurred uniformly throughout the human genome. These findings suggest that population associations between DNA polymorphisms and disease susceptibility genes near the insulin gene or structural mutations in the insulin gene will be weak. Thus, population studies would probably require large sample sizes to detect associations. However, the low levels of nonrandom association increase the information content of the locus for linkage studies, which is the best alternative for discovering disease susceptibility genes.
PMCID:323007
PMID: 3006026
ISSN: 0027-8424
CID: 3974522
Linkage analysis between Huntington disease and the G8 marker locus
Badner, J A; Chakravarti, A; Buetow, K H
PMID: 2883077
ISSN: n/a
CID: 3974482
Some fallacious thinking about the paternity index: A reply to Dr. Jack Valentin's comments
Li, C C; Chakravarti, A
PMCID:1684799
PMID: 17948564
ISSN: 0002-9297
CID: 3974462
Nonuniform recombination within the human beta-globin gene cluster: A reply to B. S. Weir and W. G. Hill
Chakravarti, A; Buetow, K H; Antonarakis, S E; Waber, P G; Boehm, C D; Kazazian, H H
PMCID:1684835
PMID: 17948565
ISSN: 0002-9297
CID: 3974472
Linkage map on chromosome 21q and the association of a DNA haplotype with a propensity to nondisjunction and trisomy 21
Antonarakis, S E; Kittur, S D; Metaxotou, C; Bartsocas, C; Kitsiou, S; Watkins, P C; Patel, A S; Warren, A C; Gusella, J F; Groner, Y; [Chakravarti, Aravinda; Havlik, R
PMID: 2990311
ISSN: 0077-8923
CID: 3987772
Genetic epidemiology of adenocarcinoma of the colon
Chapter by: Chakravarti, A; Strong, LC; Bale, SJ; Ferrell, RE
in: Familial cancer : First international research conference on familial cancer, Basel, September 16-21, 1985 by Muller, Hansjakob; Weber, Walter; Kuttapa, Thelma (Eds)
Basel ; Munchen ; Paris : Karger, cop. 1985
pp. 81-84
ISBN: 9783805542456
CID: 3979762
Discussion of esophagus, stomach, colrectum, pancreas and lung cancers
Chapter by: Weber, W; Chakravarti, A
in: Familial cancer : First international research conference on familial cancer, Basel, September 16-21, 1985 by Muller, Hansjakob; Weber, Walter; Kuttapa, Thelma (Eds)
Basel ; Munchen ; Paris : Karger, cop. 1985
pp. 96-97
ISBN: 9783805542456
CID: 3979772