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Gene expression profiling using the terminal continuation (TC) RNA amplification method for small input samples in neuroscience

Chapter by: Ginsberg, SD; Alldred, MJ; Che, S
in: Expression profiling in neuroscience by Karamanos, Yannis [Eds]
New York : Humana Press, c2012
pp. 21-33
ISBN: 9781617794476
CID: 448622

Mechanisms underlying insulin deficiency-induced acceleration of beta-amyloidosis in a mouse model of Alzheimer's disease

Devi, Latha; Alldred, Melissa J; Ginsberg, Stephen D; Ohno, Masuo
Although evidence is accumulating that diabetes mellitus is an important risk factor for sporadic Alzheimer's disease (AD), the mechanisms by which defects in insulin signaling may lead to the acceleration of AD progression remain unclear. In this study, we applied streptozotocin (STZ) to induce experimental diabetes in AD transgenic mice (5XFAD model) and investigated how insulin deficiency affects the beta-amyloidogenic processing of amyloid precursor protein (APP). Two and half months after 5XFAD mice were treated with STZ (90 mg/kg, i.p., once daily for two consecutive days), they showed significant reductions in brain insulin levels without changes in insulin receptor expression. Concentrations of cerebral amyloid-beta peptides (Abeta40 and Abeta42) were significantly increased in STZ-treated 5XFAD mice as compared with vehicle-treated 5XFAD controls. Importantly, STZ-induced insulin deficiency upregulated levels of both beta-site APP cleaving enzyme 1 (BACE1) and full-length APP in 5XFAD mouse brains, which was accompanied by dramatic elevations in the beta-cleaved C-terminal fragment (C99). Interestingly, BACE1 mRNA levels were not affected, whereas phosphorylation of the translation initiation factor eIF2alpha, a mechanism proposed to mediate the post-transcriptional upregulation of BACE1, was significantly elevated in STZ-treated 5XFAD mice. Meanwhile, levels of GGA3, an adapter protein responsible for sorting BACE1 to lysosomal degradation, are indistinguishable between STZ- and vehicle-treated 5XFAD mice. Moreover, STZ treatments did not affect levels of Abeta-degrading enzymes such as neprilysin and insulin-degrading enzyme (IDE) in 5XFAD brains. Taken together, our findings provide a mechanistic foundation for a link between diabetes and AD by demonstrating that insulin deficiency may change APP processing to favor beta-amyloidogenesis via the translational upregulation of BACE1 in combination with elevations in its substrate, APP.
PMCID:3293895
PMID: 22403710
ISSN: 1932-6203
CID: 448862

Altered microglial gene expression in HIV encephalitis, as determined by microarray analysis of laser capture microdissected macrophages/microglia from postmortem human brain [Meeting Abstract]

Fischer-Smith, T.; Banerjee, S.; Gunnam, S. M.; Alldred, M. J.; Ginsberg, S. D.
BIOSIS:PREV201200719183
ISSN: 1558-3635
CID: 459252

Maternal choline supplementation improves cognitive function in the Ts65Dn mouse model of Down syndrome: Correlations between basal forebrain cholinergic neurons and performance [Meeting Abstract]

Powers, B. E.; Ash, J. A.; Velazquez, R.; Kelley, C. M.; Strawderman, M.; Alldred, M.; Ginsberg, S. D.; Mufson, E. J.; Strupp, B. J.
BIOSIS:PREV201200719014
ISSN: 1558-3635
CID: 459052

Downregulation of select neurotrophin genes in hippocampal CA1 pyramidal neurons and cholinergic basal forebrain (CBF) neurons in mild cognitive impairment (MCI) and Alzheimer's disease (AD) [Meeting Abstract]

Ginsberg, S. D.; Alldred, M. J.; Counts, S. E.; Wuu, J.; Mufson, E. J.; Che, S.
BIOSIS:PREV201200722265
ISSN: 1558-3635
CID: 459072

Microarray analysis of hippocampal CA1 pyramidal neurons in a murine model of Down's syndrome (DS) and Alzheimer's disease (AD) [Meeting Abstract]

Alldred, M. J.; Ginsberg, S. D.
BIOSIS:PREV201200722267
ISSN: 1558-3635
CID: 459082

Upregulation of select rab GTPases in cholinergic basal forebrain neurons in mild cognitive impairment and Alzheimer's disease

Ginsberg, Stephen D; Mufson, Elliott J; Alldred, Melissa J; Counts, Scott E; Wuu, Joanne; Nixon, Ralph A; Che, Shaoli
Endocytic system dysfunction is one of the earliest disturbances that occur in Alzheimer's disease (AD), and may underlie the selective vulnerability of cholinergic basal forebrain (CBF) neurons during the progression of dementia. Herein we report that genes regulating early and late endosomes are selectively upregulated within CBF neurons in mild cognitive impairment (MCI) and AD. Specifically, upregulation of rab4, rab5, rab7, and rab27 was observed in CBF neurons microdissected from postmortem brains of individuals with MCI and AD compared to age-matched control subjects with no cognitive impairment (NCI). Upregulated expression of rab4, rab5, rab7, and rab27 correlated with antemortem measures of cognitive decline in individuals with MCI and AD. qPCR validated upregulation of these select rab GTPases within microdissected samples of the basal forebrain. Moreover, quantitative immunoblot analysis demonstrated upregulation of rab5 protein expression in the basal forebrain of subjects with MCI and AD. The elevation of rab4, rab5, and rab7 expression is consistent with our recent observations in CA1 pyramidal neurons in MCI and AD. These findings provide further support that endosomal pathology accelerates endocytosis and endosome recycling, which may promote aberrant endosomal signaling and neurodegeneration throughout the progression of AD
PMCID:3163754
PMID: 21669283
ISSN: 1873-6300
CID: 136996

Gene expression profile changes within pyramidal neurons and GABAergic interneuron subtypes in schizophrenia cerebral cortex [Meeting Abstract]

Smiley, J. F.; Chao, H. M.; Dwork, A. J.; Alldred, M. J.; Elarova, I.; Javitt, D. C.; Ginsberg, S. D.
BIOSIS:PREV201200082696
ISSN: 1558-3635
CID: 459032

Upregulation of select endocytic and exocytic rab GTPases in cholinergic basal forebrain (CBF) neurons in mild cognitive impairment (MCI) and Alzheimer's disease (AD) [Meeting Abstract]

Ginsberg, S. D.; Mufson, E. J.; Alldred, M. J.; Counts, S. E.; Wuu, J.; Nixon, R. A.; Che, S.
BIOSIS:PREV201200051633
ISSN: 1558-3635
CID: 458952

Microarray analysis of CA1 pyramidal neurons in the hTau mouse model of tauopathy reveals progressive synaptic degeneration [Meeting Abstract]

Alldred, M. J.; Duff, K. E.; Ginsberg, S. D.
BIOSIS:PREV201200102641
ISSN: 1558-3635
CID: 459282