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Molecular and metabolic pattern classification for detection of brain glioma progression
Imani, Farzin; Boada, Fernando E; Lieberman, Frank S; Davis, Denise K; Mountz, James M
OBJECTIVES: The ability to differentiate between brain tumor progression and radiation therapy induced necrosis is critical for appropriate patient management. In order to improve the differential diagnosis, we combined fluorine-18 2-fluoro-deoxyglucose positron emission tomography ((18)F-FDG PET), proton magnetic resonance spectroscopy ((1)H MRS) and histological data to develop a multi-parametric machine-learning model. METHODS: We enrolled twelve post-therapy patients with grade 2 and 3 gliomas that were suspicious of tumor progression. All patients underwent (18)F-FDG PET and (1)H MRS. Maximal standardized uptake value (SUVmax) of the tumors and reference regions were obtained. Multiple 2D maps of choline (Cho), creatine (Cr), and N-acetylaspartate (NAA) of the tumors were generated. A support vector machine (SVM) learning model was established to take imaging biomarkers and histological data as input vectors. A combination of clinical follow-up and multiple sequential MRI studies served as the basis for assessing the clinical outcome. All vector combinations were evaluated for diagnostic accuracy and cross validation. The optimal cutoff value of individual parameters was calculated using Receiver operating characteristic (ROC) plots. RESULTS: The SVM and ROC analyses both demonstrated that SUVmax of the lesion was the most significant single diagnostic parameter (75% accuracy) followed by Cho concentration (67% accuracy). SVM analysis of all paired parameters showed SUVmax and Cho concentration in combination could achieve 83% accuracy. SUVmax of the lesion paired with SUVmax of the white matter as well as the tumor Cho paired with the tumor Cr both showed 83% accuracy. These were the most significant paired diagnostic parameters of either modality. Combining all four parameters did not improve the results. However, addition of two more parameters, Cho and Cr of brain parenchyma contralateral to the tumor, increased the accuracy to 92%. CONCLUSION: This study suggests that SVM models may improve detection of glioma progression more accurately than single parametric imaging methods. RESEARCH SUPPORT: National Cancer Institute, Cancer Center Support Grant Supplement Award, Imaging Response Assessment Teams.
PMCID:3923608
PMID: 24321226
ISSN: 0720-048x
CID: 910402
Adult brain tumor imaging: state of the art
Bangiyev, Lev; Rossi Espagnet, Maria Camilla; Young, Robert; Shepherd, Timothy; Knopp, Edmond; Friedman, Kent; Boada, Fernando; Fatterpekar, Girish M
PMID: 24342674
ISSN: 0037-198x
CID: 746552
Simultaneous MR-PET reconstruction using multi sensor compressed sensing and joint sparsity [Meeting Abstract]
Knoll, Florian; Koesters, Thomas; Otazo, Ricardo; Block, Tobias; Feng, Li; Vunckx, Kathleen; Faul, Daniel; Nuyts, Johan; Boada, Fernando; Sodickson, Daniel K
ORIGINAL:0014694
ISSN: 1524-6965
CID: 4534402
PET/CT vs PET/MR for the clinical evaluation of patients with dementia [Meeting Abstract]
Ding, Y -S; Shepherd, T; Boada, F; Friedman, K
Background: Simultaneous PET/MR is a new technology that may be used in the evaluation of dementia patients. There are few data in the literature regarding quantitative differences between PET data obtained at PET/CT vs PET/ MR and how this may impact image interpretation. This study compared the PET interpretation of PET/CT vs PET/ MR by two independent experienced nuclear medicine physicians. Methods: Forty-five minutes following injection of 10 mCi of FDG, 19 patients with clinically-suspected dementia underwent a 15-min clinical brain PET/CT. Simultaneous PET/MR scanning was subsequently performed (60 min listmode) at approximately 90 min post-injection. Two experienced nuclear medicine physicians blindly interpreted the PET portion of all PET/CT scans, attributing a specific diagnosis (normal, AD, FTD, LBD, other dementia, mixed phenotype or unspecified disease) and severity scale (mild, moderate or severe abnormality). The readers then blindly interpreted the PET data obtained from PET/MR. Concordance between PET/CT (reference standard) and PET/ MR with respect to diagnosis and disease severity was assessed for each reader. Results: Reader A classified 12 PET/CT scans as AD, 5 as unspecified dementia, 1 as LBD and 1 as normal with a mean severity score of 2.0. Reader B classified 10 PET/CT scans as AD, 3 as unspecified, 1 as LBD and 5 as normal with mean severity score of 2.1. PET/MR interpretations with comparison to PET/CT yielded an 84% (16/19) intrareader concordance of diagnosis, with 95% (18/19) of severity scores varying by one point or less. Reader B exhibited 84% intra-reader concordance of dementia pattern diagnosis, with 89% (17/19) of all scores varying by one point or less. Conclusions: Our preliminary analysis in clinically-suspected dementia patients showed a relatively high concordance of intra-reader assignment of diagnosis and severity of findings between PET/CT and PET/MR when evaluated by two blinded experienced nuclear medicine physicians. These results suggest PET/MR!
EMBASE:71278446
ISSN: 0893-133x
CID: 752882
Superparamagnetic iron oxide is suitable to label tendon stem cells and track them in vivo with MR imaging
Yang, Yunfa; Zhang, Jianying; Qian, Yongxian; Dong, Shiwu; Huang, He; Boada, Fernando E; Fu, Freddie H; Wang, James H-C
Tendon stem cells (TSCs) may be used to effectively repair or regenerate injured tendons. However, the fates of TSCs once implanted in vivo remain unclear. This study was aimed to determine the feasibility of labeling TSCs with super-paramagnetic iron oxide (SPIO) nano-particles to track TSCs in vivo using MRI. Rabbit TSCs were labeled by incubation with 50 mug/mL SPIO. Labeling efficiency, cell viability, and proliferation were then measured, and the stemness of TSCs was tested by quantitative real time RT-PCR (qRT-PCR) and immunocytochemistry. We found that the labeling efficiency of TSCs reached as high as 98%, and that labeling at 50 mug/mL SPIO concentrations did not alter cell viability and cell proliferation compared to non-labeled control cells. Moreover, the expression levels of stem cell markers (Nucleostemin, Nanog, and Oct-4) did not change in SPIO-labeled TSCs compared to non-labeled cells. Both labeled and non-labeled cells also exhibited similar differentiation potential. Finally, labeled TSCs could be detected by MRI both in vitro and in vivo. Taken together, the findings of this study show that labeling TSCs with SPIO particles is a feasible approach to track TSCs in vivo by MRI, which offers a non-invasive method to monitor repair of injured tendons.
PMCID:3766440
PMID: 23549900
ISSN: 0090-6964
CID: 910382
Correlated sodium and potassium imbalances within the ischemic core in experimental stroke: a 23Na MRI and histochemical imaging study
Yushmanov, Victor E; Kharlamov, Alexander; Yanovski, Boris; LaVerde, George; Boada, Fernando E; Jones, Stephen C
This study addresses the spatial relation between local Na(+) and K(+) imbalances in the ischemic core in a rat model of focal ischemic stroke. Quantitative [Na(+)] and [K(+)] brain maps were obtained by (23)Na MRI and histochemical K(+) staining, respectively, and calibrated by emission flame photometry of the micropunch brain samples. Stroke location was verified by diffusion MRI, by changes in tissue surface reflectivity and by immunohistochemistry with microtubule-associated protein 2 antibody. Na(+) and K(+) distribution within the ischemic core was inhomogeneous, with the maximum [Na(+)] increase and [K(+)] decrease typically observed in peripheral regions of the ischemic core. The pattern of the [K(+)] decrease matched the maximum rate of [Na(+)] increase ('slope'). Some residual mismatch between the sites of maximum Na(+) and K(+) imbalances was attributed to the different channels and pathways involved in transport of the two ions. A linear regression of the [Na(+)]br vs. [K(+)]br in the samples of ischemic brain indicates that for each K(+) equivalent leaving ischemic tissue, 0.8+/-0.1 Eq, on average, of Na(+) enter the tissue. Better understanding of the mechanistic link between the Na(+) influx and K(+) egress would validate the (23)Na MRI slope as a candidate biomarker and a complementary tool for assessing ischemic damage and treatment planning.
PMCID:3885320
PMID: 23792152
ISSN: 0006-8993
CID: 910392
Repeatability of ultrashort echo time-based two-component T2* measurements on cartilages in human knee at 3 T
Qian, Yongxian; Williams, Ashley A; Chu, Constance R; Boada, Fernando E
Repeatability of in vivo measurement of multicomponent T2* relaxation in articular cartialges in human knee is important to clinical use. This study evaluated the repeatability of two-component T2* relaxation on seven healthy human subjects. The left knee was scanned once a day in three consecutive days, on a clinical 3T MRI scanner with eight-channel knee coil and ultrashort echo time pulse sequence at 11 echo times=0.6-40 ms. The intrasubject and intersubject repeatability was evaluated via coefficient of variation (CV=standard deviation/mean) in four typical cartilage regions: patellar, anterior articular, femoral, and tibial regions. It was found that the intrasubject repeatability was good, with CV<10% for the short- and long-T2* relaxation time in the layered regions in the four cartilages (with one exception) and CV<13% for the component intensity fraction (with two exceptions). The intersubject repeatability was also good, with CV approximately 8% (range 1-15%) for the short- and long-T2* relaxation time and CV approximately 10% (range 2-20%) for the component intensity fraction. The long-T2* component showed significantly better repeatability (CV approximately 8%) than the short-T2* component (CV approximately 12%) (P<0.005). These CV values suggest that in vivo measurement of two-component T2* relaxation in the knee cartilages is repeatable on clinical scanner at 3 T, with a signal-to-noise ratio of 90.
PMCID:3538116
PMID: 23034822
ISSN: 0740-3194
CID: 910352
Multi-slice parallel transmission three-dimensional tailored RF (PTX 3DTRF) pulse design for signal recovery in ultra high field functional MRI
Zheng, Hai; Zhao, Tiejun; Qian, Yongxian; Schirda, Claudiu; Ibrahim, Tamer S; Boada, Fernando E
T(2)( *) weighted fMRI at high and ultra high field (UHF) is often hampered by susceptibility-induced, through-plane, signal loss. Three-dimensional tailored RF (3DTRF) pulses have been shown to be an effective approach for mitigating through-plane signal loss at UHF. However, the required RF pulse lengths are too long for practical applications. Recently, parallel transmission (PTX) has emerged as a very effective means for shortening the RF pulse duration for 3DTRF without sacrificing the excitation performance. In this article, we demonstrate a RF pulse design strategy for 3DTRF based on the use of multi-slice PTX 3DTRF to simultaneously and precisely recover signal with whole-brain coverage. Phantom and human experiments are used to demonstrate the effectiveness and robustness of the proposed method on three subjects using an eight-channel whole body parallel transmission system.
PMCID:3581716
PMID: 23348046
ISSN: 1090-7807
CID: 910372
Sodium imaging of human brain at 7 T with 15-channel array coil
Qian, Yongxian; Zhao, Tiejun; Wiggins, Graham C; Wald, Lawrence L; Zheng, Hai; Weimer, Jonathan; Boada, Fernando E
Signal-to-noise ratio (SNR) is a major challenge to sodium magnetic resonance imaging. Phased array coils have been shown significantly improving SNR in proton imaging over volume coils. This study investigates SNR advantage of a 15-channel array head coil (birdcage volume coil for transmit/receive and 15-channel array insert for receive-only) in sodium imaging at 7 T. Phantoms and healthy human brains were scanned on a whole-body 7 T magnetic resonance imaging scanner using a customer-developed pulse sequence with the twisted projection imaging trajectory. Noise-only images were acquired with blanked radiofrequency excitations for noise measurement on a pixel basis. SNR was calculated on the root of sum-of-squares images. When compared with the volume coil, the 15-channel array produced SNR more than doubled at the periphery and slightly increased at the center of the phantoms and human brains. Decorrelation of noise across channels of the array coil extended the SNR-doubled region into deep area of the brain. The spatial modulation of element sensitivities on the sum-of-squares combined image was removed by performing self-calibrated sensitivity encoding parallel image reconstruction and uniform image intensity across entire field of view was attained. The 15-channel array coil is an efficient tool to substantially improve SNR in sodium imaging on human brain. Magn Reson Med, 2012. (c) 2012 Wiley Periodicals, Inc.
PMID: 22377960
ISSN: 0740-3194
CID: 175943
Association of small vessel ischemic white matter changes with BOLD fMRI imaging in the elderly
Patel, Meenal J; Boada, Fernando E; Price, Julie C; Sheu, Lei K; Tudorascu, Dana L; Reynolds Iii, Charles F; Aizenstein, Howard J
White matter hyperintensities (WMHs) are often identified on T2-weighted magnetic resonance (MR) images in the elderly. The WMHs are generally associated with small vessel ischemic or pre-ischemic changes. However, the association of WMHs with blood oxygen level dependent (BOLD) functional magnetic resonance imaging (fMRI) signal is understudied. In this study, we evaluate how the BOLD signal change is related to the presence of WMHs in the elderly. Data were acquired as part of a study of late-life depression and included elderly individuals with and without major depression. The subjects were pooled because the presence of depression was not significantly associated with task-related BOLD changes, task performance, and WMH distribution. A whole brain voxel-wise regression analysis revealed a significant negative correlation between WMH burden and BOLD signal change during finger-tapping in the parietal white matter. Our observation that WMHs are associated with a significant diminution of the BOLD signal change underscores the importance of considering cerebrovascular burden when interpreting fMRI studies in the elderly. The mechanism underlying the association of WMH and BOLD signal change remains unclear: the association may be mediated by changes in neural activation, changes in coupling between neuronal activity and hemodynamics, or, perhaps, secondary to the effect of the ischemic changes on the sensitivity of the T2* BOLD MR signal.
PMCID:3518674
PMID: 23131524
ISSN: 0165-1781
CID: 910362