Faculty Bibliography

OBJECTIVE:In this paper, we introduce Global Maxwell Tomography (GMT), a novel, volumetric technique that estimates electric conductivity and permittivity by solving an inverse scattering problem based on magnetic resonance measurements. METHODS:GMT relies on a fast volume integral equation solver, MARIE, for the forward path and a novel regularization method, Match Regularization, designed specifically for electrical properties estimation from noisy measurements. We performed simulations with three different tissue-mimicking numerical phantoms of different complexity, using synthetic transmit sensitivity maps with realistic noise levels as the measurements. We performed an experiment at 7T using an 8-channel coil and a uniform phantom. RESULTS:We showed that GMT could estimate relative permittivity and conductivity from noisy magnetic resonance measurements with an average error as low as 0.3% and 0.2%, respectively, over the entire volume of the numerical phantom. Voxel resolution did not affect GMT performance and is currently limited only by the memory of the Graphics Processing Unit. In the experiment, GMT could estimate electrical properties within 5% of the values measured with a dielectric probe. CONCLUSION/CONCLUSIONS:This work demonstrated the feasibility of GMT with Match Regularization, suggesting that it could be effective for accurate in vivo electrical property estimation. GMT does not rely on any symmetry assumption for the electromagnetic field and can be generalized to estimate also the spin magnetization, at the expenses of increased computational complexity. SIGNIFICANCE/CONCLUSIONS:GMT could provide insight into the distribution of electromagnetic fields inside the body, which represents one of the key ongoing challenges for various diagnostic and therapeutic applications.

Accelerating Magnetic Resonance Imaging (MRI) by taking fewer measurements has the potential to reduce medical costs, minimize stress to patients and make MRI possible in applications where it is currently prohibitively slow or expensive. We introduce the fastMRI dataset, a large-scale collection of both raw MR measurements and clinical MR images, that can be used for training and evaluation of machine-learning approaches to MR image reconstruction. By introducing standardized evaluation criteria and a freely-accessible dataset, our goal is to help the community make rapid advances in the state of the art for MR image reconstruction. We also provide a self-contained introduction to MRI for machine learning researchers with no medical imaging background

Following the success of deep learning in a wide range of applications, neural network-based machine learning techniques have received interest as a means of accelerating magnetic resonance imaging (MRI). A number of ideas inspired by deep learning techniques from computer vision and image processing have been successfully applied to non-linear image reconstruction in the spirit of compressed sensing for both low dose computed tomography and accelerated MRI. The additional integration of multi-coil information to recover missing k-space lines in the MRI reconstruction process, is still studied less frequently, even though it is the de-facto standard for currently used accelerated MR acquisitions. This manuscript provides an overview of the recent machine learning approaches that have been proposed specifically for improving parallel imaging. A general background introduction to parallel MRI is given that is structured around the classical view of image space and k-space based methods. Both linear and non-linear methods are covered, followed by a discussion of recent efforts to further improve parallel imaging using machine learning, and specifically using artificial neural networks. Image-domain based techniques that introduce improved regularizers are covered as well as k-space based methods, where the focus is on better interpolation strategies using neural networks. Issues and open problems are discussed as well as recent efforts for producing open datasets and benchmarks for the community.

We develop and evaluate a neural network-based method for Gibbs artifact and noise removal. A convolutional neural network (CNN) was designed for artifact removal in diffusion-weighted imaging data. Two implementations were considered: one for magnitude images and one for complex images. Both models were based on the same encoder-decoder structure and were trained by simulating MRI acquisitions on synthetic non-MRI images. Both machine learning methods were able to mitigate artifacts in diffusion-weighted images and diffusion parameter maps. The CNN for complex images was also able to reduce artifacts in partial Fourier acquisitions. The proposed CNNs extend the ability of artifact correction in diffusion MRI. The machine learning method described here can be applied on each imaging slice independently, allowing it to be used flexibly in clinical applications

OBJECTIVE:The outcome of arthroscopic treatment for femoroacetabular impingement (FAI) depends on the preoperative status of the hip cartilage. Quantitative T2 can detect early biochemical cartilage changes, but its routine implementation is challenging. Furthermore, intrinsic T2 variability between patients makes it difficult to define a threshold to identify cartilage lesions. To address this, we propose a normalized T2-index as a new method to evaluate cartilage in FAI. DESIGN/METHODS:We retrospectively analyzed magnetic resonance imaging (MRI) data of 18 FAI patients with arthroscopically confirmed cartilage defects. Cartilage T2 maps were reconstructed from multi-spin-echo 3-T data using the echo-modulation-curve (EMC) model-based technique. The central femoral cartilage, assumed healthy in early-stage FAI, was used as the normalization reference to define a T2-index. We investigated the ability of the T2-index to detect surgically confirmed cartilage lesions. RESULTS:The average T2-index was 1.14 ± 0.1 and 1.13 ± 0.1 for 2 separated segmentations. Using T2-index >1 as the threshold for damaged cartilage, accuracy was 88% and 100% for the 2 segmentations. We found moderate intraobserver repeatability, although separate segmentations yielded comparable accuracy. Damaged cartilage could not be identified using nonnormalized average T2 values. CONCLUSIONS:This preliminary study confirms the importance of normalizing T2 values to account for interpatient variability and suggests that the T2-index is a promising biomarker for the detection of cartilage lesions in FAI. Future work is needed to confirm that combining T2-index with morphologic MRI and other quantitative biomarkers could improve cartilage assessment in FAI.

Purpose: SparseCT is a practical compressed sensing approach for CT dose reduction, which undersamples each view along the row dimension with a multislit collimator (MSC). The MSC is mounted between tube and patient and moves along the row direction to change the undersampling pattern along the row dimension for each view. This study aims to investigate the impact of MSC motion on SparseCT image quality.
Method(s): A SparseCT prototype was built with the MSC installed on a state-of-art clinical CT scanner. The MSC is a tungsten plate with periodic slits parallel to detector row direction. The slit separation is 3 times wider than the slit width, such that the dose reduction factor is 3. A liver phantom was scanned repeatedly at various MSC locations, each sampling different rows. The MSC was static during each scan, but 'dynamic MSC' scans were retrospectively simulated by stitching together projections from different scans. Six MSC motions were tested, including 3 patterns (linear, back-and-forth, and random) and 2 speeds (1 and 5 row(s)/projection). The dynamic MSC scans were reconstructed iteratively using a compressed sensing reconstruction algorithm that enforces 3D sparsity using total variation regularization. Image quality for different motions were compared in terms of PSNR and SSIM.
Result(s): Increasing MSC motion speed significantly improved PSNR and SSIM while the effect of motion pattern was negligible. Higher motion speeds also markedly reduced undersampling artifacts observed around high attenuation, high frequency objects such as the spine. The best PSNR and SSIM were achieved using a combination of linear motion and a speed of 5 rows/projection.
Conclusion(s): The motion of the MSC has a significant impact on the performance of SparseCT. Higher motion speed yields more incoherent undersampling artifacts and thus improves reconstruction quality

There is increasing scrutiny from healthcare organizations towards the utility and associated costs of imaging. MRI has traditionally been used as a high-end modality, and although shown extremely important for many types of clinical scenarios, it has been suggested as too expensive by some. This editorial will try and explain how value should be addressed and gives some insights and practical examples of how value of MRI can be increased. It requires a global effort to increase accessibility, value for money, and impact on patient management. We hope this editorial sheds some light and gives some indications of where the field may wish to address some of its research to proactively demonstrate the value of MRI. Level of Evidence: 5 Technical Efficacy: Stage 5 J. Magn. Reson. Imaging 2019;49:e14-e25.

The dynamics of large spin-1/2 ensembles are commonly described by the Bloch equation, which is characterized by the magnetization's non-linear response to the driving magnetic field. Consequently, most magnetic field variations result in non-intuitive spin dynamics, which are sensitive to small calibration errors. Although simplistic field variations result in robust spin dynamics, they do not explore the richness of the system's phase space. Here, we identify adiabaticity conditions that span a large experiment design space with tractable dynamics. All dynamics are trapped in a one-dimensional subspace, namely in the magnetization's absolute value, which is in a transient state, while its direction adiabatically follows the steady state. In this hybrid state, the polar angle is the effective drive of the spin dynamics. As an example, we optimize this drive for robust and efficient quantification of spin relaxation times and utilize it for magnetic resonance imaging of the human brain.

Low-dose X-ray CT is a major research area with high clinical impact. Compressed sensing using view-based sparse sampling and sparsity-promoting regularization has shown promise in simulations, but these methods can be difficult to implement on diagnostic clinical CT scanners since the X-ray beam cannot be switched on and off rapidly enough. An alternative to view-based sparse sampling is interrupted-beam sparse sampling. SparseCT is a recently-proposed interrupted-beam scheme that achieves sparse sampling by blocking a portion of the beam using a multislit collimator. The use of a multislit collimator necessitates a number of modifications to the standard compressed sensing reconstruction pipeline. In particular, we find that SparseCT reconstruction is feasible within a model-based image reconstruction framework that incorporates data fidelity weighting to consider penumbra effects and source jittering to consider the effect of partial source obstruction. Here, we present these modifications and demonstrate their application in simulations and real-world prototype scans. In simulations compared to conventional low-dose acquisitions, SparseCT is able to achieve smaller normalized root-mean square differences than tube-current reduction at larger dose reduction levels. In prototype experiments, we successfully apply our reconstruction modifications and maintain image resolution at the quarter-dose reduction level. The SparseCT design requires only small hardware modifications to current diagnostic clinical scanners, opening up new possibilities for CT dose reduction.

PURPOSE/OBJECTIVE:The optimization and analysis of spin ensemble trajectories in the hybrid state-a state in which the direction of the magnetization adiabatically follows the steady state while the magnitude remains in a transient state. METHODS: RESULTS: CONCLUSIONS: